rna2697, rna2697 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2697
Unique Name	rna2697
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1719
Alignment location	CM002459.1:992585..994001 -

Link to JBrowse

Properties


Property Name	Value
Product	mg-protoporphyrin ix methyl transferase
Orig transcript id	gnl\|cribi\|Naga_100008g68.7905.mrna
Orig protein id	gnl\|cribi\|Naga_100008g68.7905
Gene	PPMT
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:992585..994001 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PPMT	gene2580	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2697	rna2697-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28013.1	cds2689	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:992585..994001-
coding sequence from alignment at CM002459.1:992585..994001-

mRNA sequence

>rna2697 ID=rna2697|Name=rna2697|organism=Nannochloropsis gaditana|type=mRNA|length=1719bp
ATGGCCCTGAAACGGGTGTACGAGGCTGCGCCTTTAAACGAAGATGTAGG
GAGCAAGCCAAGCGCTTCTGTGCCTCCGTCTCAATCTATCTTGTCTGAGT
CAAGTTCTTCGCCGAATGCGCCCCCACAAGACCACAATGATGGAAGCCTC
AGACAGACCAAGCGAATGAAAAGGCTTCTTGCCTCCGACCCCGCGGCGGC
CGAAAGAATGGATTACCGCCGACGTTTGGGATTGGCCCGCCGGGACGACG
ACATACCTACAGCTCTCCAATTGTTTGCGGACGTACAGGCACGTGATATT
GATATTGGATCCGAGGGATTCAATGCCTTGATCGCGTTATTGACCACATT
TGAGCGGCTGGAGGACGCTGACCAAGTCCTCACTCACATGCGTCGGAAGC
ACTTTTCTTTGACGGAGGCTACTTACGTCTGTATAATGCGGGCCTTGGCG
CTGGGAGGCCGGCAACCTGAAGCAGCGGAGGATTTGTTGAGGGAGATGCT
GGCGGGAGGCTTACGTCCTCGATTACGATCCTATAGTCCTATTATTGTAG
GATACGCTGAACAGGGAAAGCTCGAGAATGCCTTCGCTTTGTACGACAAA
ATGCTGGCTCAGGACATTGAGCCAACGGAAACGGAACTTGTGGCCTTGTT
GCGGGGGTGTTCGGGGGAAGGAGGGGGAAACGTGGAGGTGGATAACTTTT
ATCGGACTTTGGCTGACCTGCAAGACTTGGTGCTGGAGCCGGGGGAGGGG
GCATGGGAGGCGGTGGCGGGATGGTTCGAGAAGCGAAGGGAGAGGGGTGA
CTGGGCGGTAGGACATGACCAGGCCGCAAAGAGCGGAGGAAGGGGGAAGG
ACCGAAAGGCCGCATTGCCACAAACCCCGAGCCCGGAAATGTCCGTGAGG
CGTGGAGTGGTCGTGGACGAGGCAGGGGTCTGCAGTGGTTGCGGGACGGT
GCTGGAATCCATCCAGCTTTCCTCGGAGGCTGCAGATGAATTGATGACCA
AGGTTGAAGAGCTTGTGCTCGCGGACCGGGCCCGAGAAGCGGAATGGGCG
CGTTTCAAGGCGTGGCTGCGGGGGCCGGGAGGGGGAGGGCGGGCACCGGA
ATTCGACACGGTGATCGATGGCGCCAACGTGGGCTATTTCCAGATGAATT
ACGCCCAAGCCCCTCCTCACGTGAACTACGAGCAGATTTCCTGGGTGGTG
GAGCACTTCGTGGGGATGGGAAAGAAACCTTTGCTGGTGCTGCATGCTCG
CCATGTGGACAGTCGAAGGGTCCCGCCGGGCTATGCTGCTTTGGTCCAGA
AATGGCGTGAGCGGCAGTTGTTGTTGGTGGTTCCATATCGCAACAATGAC
GACTGGTTCTGGCTATTTGCGACTGTGTTCAAAGGAGGCCGGACCCTTCT
GGTCACGAACGACGAGATGCGGGATCACCACTTCCAAATGCTCTCACAGC
GAACGTTTCTGCGCTGGAAGGAGAGGCACCAGGTGCACTTCTCATTCGGT
GGGTATGAGAAGGGTGGGGGGCGGAGCGTGCAAATACAGGTTCCGGCGGT
GTATTCCAAGTGTATCCAGGGGCCTGGGAACGGAAAGGCGGCGGGAGGAA
GGGAGGACGAAAATTGGCATTTGCCCAGAGCGGGCGATGACAAATGGTTG
TGTGTGCAAGTGCGACGGGGGGGAGCCACACACGCGCAAAACGATGGCGG
CATGACCGAGAAGAGTTAA

protein sequence of rna2697

>rna2697-protein ID=rna2697-protein|Name=rna2697|organism=Nannochloropsis gaditana|type=polypeptide|length=325bp
MRTTLVAVAAAATLSCAFAFVPFVPARQTQRSTTRIMAATKPKVTSVGTD
DKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQ
ADGVKGESICDAGCGVGSLAIPMAELGAKVAASDISSSMANEGRQRAEAV
LGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGS
LAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKA
AGFTVRRTEMTATNFYFSRLLEAVYARHRKWKDGDLSRGIVIRGLYVLQG
GCGLLACDGVMEEEESRPQNPKRST

mRNA from alignment at CM002459.1:992585..994001-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2697 ID=rna2697|Name=rna2697|organism=Nannochloropsis gaditana|type=mRNA|length=1417bp|location=Sequence derived from alignment at CM002459.1:992585..994001- (Nannochloropsis gaditana)
ATGAGGACGACGTTAGTGGCAGTGGCTGCGGCGGCCACCTTGAGCTGCGC
ATTCGCGTTTGTTCCATTCGTACCAGCAAGGCAAACGCAAAGGTCAACAA
CACGGTGAGTCAAGAAATGGAAAAGCCGCGTCTTTTGTAGGGCATGAATG
GTTTGGATTGAGGAACGATCGATGTAGACGCGCCAGCGCAGCAAAATGCT
GTCGGATCAATCCGCTCTCAGTCGAGGACTAGGGTGTCCCATGAATATGA
ATCGATCTCACAGAAGATCAAGTATACTGCTCATCGAACAGAGAGGATAA
AGTGTGGGCGTGCGTTCTCCATTTACATCGTGTAATTTGAACAGGCACTC
CCTAACTTCGTCTTGATCTTTTCGCGCCCCAAACCGTGAACCCAATGGTT
GTCACACTCAGCTCAAATTGTCCTTCTACGCTCTTATCATTTTGTCATCT
CTTTATTTCAGCATAATGGCAGCCACAAAGCCGAAGGTAACCAGCGTGGG
AACGGATGACAAGACGGAAGTGCGCGAGTATTTCAATACTGAAGGGTTCC
AACGGTGGAACCGTATTTACAGTGAAGATGGAACCGTCAATAAAGTGCAA
GCTGACATTCGTGTGGGACATCAGCAGACAGTTGACAAAATTTTGGGATG
GCTACAGGCGGATGGCGTGAAGGGCGAGAGCATTTGCGATGCTGGCTGCG
GTGTGGGTTCCCTGGCAATCCCCATGGCGGAGTTAGGAGCCAAAGTTGCG
GCGTCGGACATTAGCTCATCCATGGCAAATGAAGGGCGACAGCGCGCAGA
GGCGGTGTTGGGAAAAGCGACAGCACGTGCTCGGTGCTCTTTTTCGACCT
CGGACCTGGAGGCTTTGAAGGGGAAGTACGATACCGTTACCTGTGTGGAC
GTCATGATCCACTACCCGACAGACAAAATGCAGGGTATGGTGAGCAAGCT
AGGGTCCTTGGCCAAGAAAAGGATGATCATCTCGTTTGCACCCAAGACGT
GGTACTACGACATCTTGAAAAAAATTGGGGAGCTCTTCCCTGGTCCTTCT
AAGACTACTCGGGCGTACTTGCACACGGAGGAAGATGTCCGCAAGGCATT
GAAGGCGGCTGGGTTCACGGTGCGGCGCACGGAGATGACAGCGACAAACT
TCTACTTCTCCCGACTCCTGGAGGCTGTGCGTGAGTGAAAGTTTTCGTAA
GGTAAATTATGGGATACCGTACACTTGAGTGTGAAGATGGTCGAGGAAAA
ATACATAGGTCTATGCAAGGCATCGTAAATGGAAGGATGGCGACCTTTCT
AGGGGAATTGTAATACGAGGATTGTACGTTTTGCAAGGCGGTTGCGGTTT
GCTGGCGTGCGATGGAGTAATGGAGGAAGAAGAAAGCAGGCCACAAAACC
CAAAGCGGTCAACTTAA

Coding sequence (CDS) from alignment at CM002459.1:992585..994001-

>rna2697 ID=rna2697|Name=rna2697|organism=Nannochloropsis gaditana|type=CDS|length=2934bp|location=Sequence derived from alignment at CM002459.1:992585..994001- (Nannochloropsis gaditana)
GTCTATGCAAGGCATCGTAAATGGAAGGATGGCGACCTTTCTAGGGGAAT
TGTAATACGAGGATTGTACGTTTTGCAAGGCGGTTGCGGTTTGCTGGCGT
GCGATGGAGTAATGGAGGAAGAAGAAAGCAGGCCACAAAACCCAAAGCGG
TCAACTTAACATAATGGCAGCCACAAAGCCGAAGGTAACCAGCGTGGGAA
CGGATGACAAGACGGAAGTGCGCGAGTATTTCAATACTGAAGGGTTCCAA
CGGTGGAACCGTATTTACAGTGAAGATGGAACCGTCAATAAAGTGCAAGC
TGACATTCGTGTGGGACATCAGCAGACAGTTGACAAAATTTTGGGATGGC
TACAGGCGGATGGCGTGAAGGGCGAGAGCATTTGCGATGCTGGCTGCGGT
GTGGGTTCCCTGGCAATCCCCATGGCGGAGTTAGGAGCCAAAGTTGCGGC
GTCGGACATTAGCTCATCCATGGCAAATGAAGGGCGACAGCGCGCAGAGG
CGGTGTTGGGAAAAGCGACAGCACGTGCTCGGTGCTCTTTTTCGACCTCG
GACCTGGAGGCTTTGAAGGGGAAGTACGATACCGTTACCTGTGTGGACGT
CATGATCCACTACCCGACAGACAAAATGCAGGGTATGGTGAGCAAGCTAG
GGTCCTTGGCCAAGAAAAGGATGATCATCTCGTTTGCACCCAAGACGTGG
TACTACGACATCTTGAAAAAAATTGGGGAGCTCTTCCCTGGTCCTTCTAA
GACTACTCGGGCGTACTTGCACACGGAGGAAGATGTCCGCAAGGCATTGA
AGGCGGCTGGGTTCACGGTGCGGCGCACGGAGATGACAGCGACAAACTTC
TACTTCTCCCGACTCCTGGAGGCTATGAGGACGACGTTAGTGGCAGTGGC
TGCGGCGGCCACCTTGAGCTGCGCATTCGCGTTTGTTCCATTCGTACCAG
CAAGGCAAACGCAAAGGTCAACAACACGGTCTATGCAAGGCATCGTAAAT
GGAAGGATGGCGACCTTTCTAGGGGAATTGTAATACGAGGATTGTACGTT
TTGCAAGGCGGTTGCGGTTTGCTGGCGTGCGATGGAGTAATGGAGGAAGA
AGAAAGCAGGCCACAAAACCCAAAGCGGTCAACTTAACATAATGGCAGCC
ACAAAGCCGAAGGTAACCAGCGTGGGAACGGATGACAAGACGGAAGTGCG
CGAGTATTTCAATACTGAAGGGTTCCAACGGTGGAACCGTATTTACAGTG
AAGATGGAACCGTCAATAAAGTGCAAGCTGACATTCGTGTGGGACATCAG
CAGACAGTTGACAAAATTTTGGGATGGCTACAGGCGGATGGCGTGAAGGG
CGAGAGCATTTGCGATGCTGGCTGCGGTGTGGGTTCCCTGGCAATCCCCA
TGGCGGAGTTAGGAGCCAAAGTTGCGGCGTCGGACATTAGCTCATCCATG
GCAAATGAAGGGCGACAGCGCGCAGAGGCGGTGTTGGGAAAAGCGACAGC
ACGTGCTCGGTGCTCTTTTTCGACCTCGGACCTGGAGGCTTTGAAGGGGA
AGTACGATACCGTTACCTGTGTGGACGTCATGATCCACTACCCGACAGAC
AAAATGCAGGGTATGGTGAGCAAGCTAGGGTCCTTGGCCAAGAAAAGGAT
GATCATCTCGTTTGCACCCAAGACGTGGTACTACGACATCTTGAAAAAAA
TTGGGGAGCTCTTCCCTGGTCCTTCTAAGACTACTCGGGCGTACTTGCAC
ACGGAGGAAGATGTCCGCAAGGCATTGAAGGCGGCTGGGTTCACGGTGCG
GCGCACGGAGATGACAGCGACAAACTTCTACTTCTCCCGACTCCTGGAGG
CTATGAGGACGACGTTAGTGGCAGTGGCTGCGGCGGCCACCTTGAGCTGC
GCATTCGCGTTTGTTCCATTCGTACCAGCAAGGCAAACGCAAAGGTCAAC
AACACGGTCTATGCAAGGCATCGTAAATGGAAGGATGGCGACCTTTCTAG
GGGAATTGTAATACGAGGATTGTACGTTTTGCAAGGCGGTTGCGGTTTGC
TGGCGTGCGATGGAGTAATGGAGGAAGAAGAAAGCAGGCCACAAAACCCA
AAGCGGTCAACTTAACATAATGGCAGCCACAAAGCCGAAGGTAACCAGCG
TGGGAACGGATGACAAGACGGAAGTGCGCGAGTATTTCAATACTGAAGGG
TTCCAACGGTGGAACCGTATTTACAGTGAAGATGGAACCGTCAATAAAGT
GCAAGCTGACATTCGTGTGGGACATCAGCAGACAGTTGACAAAATTTTGG
GATGGCTACAGGCGGATGGCGTGAAGGGCGAGAGCATTTGCGATGCTGGC
TGCGGTGTGGGTTCCCTGGCAATCCCCATGGCGGAGTTAGGAGCCAAAGT
TGCGGCGTCGGACATTAGCTCATCCATGGCAAATGAAGGGCGACAGCGCG
CAGAGGCGGTGTTGGGAAAAGCGACAGCACGTGCTCGGTGCTCTTTTTCG
ACCTCGGACCTGGAGGCTTTGAAGGGGAAGTACGATACCGTTACCTGTGT
GGACGTCATGATCCACTACCCGACAGACAAAATGCAGGGTATGGTGAGCA
AGCTAGGGTCCTTGGCCAAGAAAAGGATGATCATCTCGTTTGCACCCAAG
ACGTGGTACTACGACATCTTGAAAAAAATTGGGGAGCTCTTCCCTGGTCC
TTCTAAGACTACTCGGGCGTACTTGCACACGGAGGAAGATGTCCGCAAGG
CATTGAAGGCGGCTGGGTTCACGGTGCGGCGCACGGAGATGACAGCGACA
AACTTCTACTTCTCCCGACTCCTGGAGGCTATGAGGACGACGTTAGTGGC
AGTGGCTGCGGCGGCCACCTTGAGCTGCGCATTCGCGTTTGTTCCATTCG
TACCAGCAAGGCAAACGCAAAGGTCAACAACACG

Synonyms

Publications