EWM27987.1, cds2676 (CDS) Nannochloropsis gaditana

Overview
NameEWM27987.1
Unique Namecds2676
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:960760..961248 -
Alignment locationCM002459.1:960153..960656 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27987.1
ProductProtein of unknown function DUF2930
Orig transcript idgnl|cribi|Naga_100008g54.7879.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:960760..961248 -
CM002459.1supercontigCM002459.1:960153..960656 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR021325DUF2930
Homology
BLAST of EWM27987.1 vs. NCBI_GenBank
Match: gi|585110328|gb|EWM27987.1| (Protein of unknown function DUF2930 [Nannochloropsis gaditana])

HSP 1 Score: 673.315 bits (1736), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query:    1 MCQSRPPLALYGTELRENNLSSTGSNRVQVFSFSGALRQMRIPPLIAVIVLGKLGLNAAFVPSACSNIHKASISSHMTQQLTYRSIAFETILMAEGNSQVGSMESVFKFIRSDALSLTVGSLCLLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVVQLQGPAVDDVKGFDALTPRQVTILRWAAQTYLKAFPTLPSVLIWHKGQTLLRNGIMADPARGTGDVRVLAIVQQALSSNPEADGLCQPTYIPDLQVLPGKIEFMNYLPSMCQAVVLQPFDSNQGLIILGGNKRRDLTPKDLARARVIAQKVQTCLAE 330
            MCQSRPPLALYGTELRENNLSSTGSNRVQVFSFSGALRQMRIPPLIAVIVLGKLGLNAAFVPSACSNIHKASISSHMTQQLTYRSIAFETILMAEGNSQVGSMESVFKFIRSDALSLTVGSLCLLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVVQLQGPAVDDVKGFDALTPRQVTILRWAAQTYLKAFPTLPSVLIWHKGQTLLRNGIMADPARGTGDVRVLAIVQQALSSNPEADGLCQPTYIPDLQVLPGKIEFMNYLPSMCQAVVLQPFDSNQGLIILGGNKRRDLTPKDLARARVIAQKVQTCLAE
Sbjct:    1 MCQSRPPLALYGTELRENNLSSTGSNRVQVFSFSGALRQMRIPPLIAVIVLGKLGLNAAFVPSACSNIHKASISSHMTQQLTYRSIAFETILMAEGNSQVGSMESVFKFIRSDALSLTVGSLCLLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVVQLQGPAVDDVKGFDALTPRQVTILRWAAQTYLKAFPTLPSVLIWHKGQTLLRNGIMADPARGTGDVRVLAIVQQALSSNPEADGLCQPTYIPDLQVLPGKIEFMNYLPSMCQAVVLQPFDSNQGLIILGGNKRRDLTPKDLARARVIAQKVQTCLAE 330          
BLAST of EWM27987.1 vs. NCBI_GenBank
Match: gi|298707779|emb|CBJ30210.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 138.272 bits (347), Expect = 5.462e-35
Identity = 93/259 (35.91%), Postives = 144/259 (55.60%), Query Frame = 0
Query:   56 LNAAFVPSACSNIHKASISSHMTQQLTYRSIAFETILMAEGNSQVGSMESVFKFIRSDALSLTVGSLCLLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVVQLQGPAVDDVKGFDALTPRQVTILRWAAQTYLKAFPTLPSVLIWHKGQTLLRNGIMADPARGTGDVRVLAIVQQALSSNPEADGLCQPTYIPDLQVLPGKIEFMNYLPSMCQAVVLQPFDSNQGLIILGGNKRRDLTPKDL 314
            +++A  PS+C  +  A  +SH  ++   R     T+   E   +     S+ + +    +SL VG   LLA++ NR+ T  L DSQ+RTDILGV ++GGL+ NG+ L D+ V+EA+ V L G  V +    D L P     L+W  ++ L   P   S+L++  G+TL R G+M + A    D+R   I+++ +S     DG  Q  Y+  LQ LPGK+EF +YLP  CQAV++ P      ++++G N+ R  TPKD+
Sbjct:   28 VSSALRPSSCRAM--ADRTSHNNKRSVSRRPRAVTMASDEVEQRSPVAGSLIRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYA--DDLAPGARRDLQWLGESLLLVSPA-TSMLVYQDGKTLARVGVMGESA----DIRDAPILRKCISEG--RDGREQ--YLAALQTLPGKVEF-DYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDI 272          
BLAST of EWM27987.1 vs. NCBI_GenBank
Match: gi|752598920|ref|WP_041268307.1| (hypothetical protein [Geitlerinema sp. PCC 7407])

HSP 1 Score: 115.546 bits (288), Expect = 3.618e-27
Identity = 86/219 (39.27%), Postives = 116/219 (52.97%), Query Frame = 0
Query:  115 LSLTVGSLCLLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVVQLQGPAVDDVKGFDALT--PRQV-TILRWAAQTYLKAFPTLPSVLIWHKGQTLLRNGIMADPARGTGDVRVLAIVQQALSSNPEADGLCQPTYIPDLQVLPGKIEFMNYLPSMCQAVVLQPFDSNQGLIILGGNKRRDLTPKDLARARVIAQKVQTCLAE 330
            L L VG+L  + L TNRL T  L DSQ+R+D LGV  +  L+L GL  Q +  R  D V L GP     +GFD  +  P  V T L WA+   L    T  S+++W+ GQ LLR GI+  P  G     +L  VQQ            +P Y+ DL+V PG+IEF +YLP   Q V+ QP   ++G++ILG N  R  T +D      IA K+   L++
Sbjct:   13 LPLVVGALGGVLLFTNRLLTPLLTDSQARSDALGVILSALLILTGLLWQRVQPRSPDAVDLVGP-----EGFDLASDLPEPVKTELAWASHILLTNTVT-KSLVVWYDGQVLLRRGILG-PVAGVKPGPILERVQQK----------QRPVYLVDLKVYPGRIEF-DYLPENTQGVICQPL-GDRGVLILGANAPRSYTQQDENWVEAIAAKLDHTLSQ 212          
BLAST of EWM27987.1 vs. NCBI_GenBank
Match: gi|427984716|gb|AFY65860.1| (hypothetical protein GEI7407_1366 [Geitlerinema sp. PCC 7407])

HSP 1 Score: 115.546 bits (288), Expect = 1.069e-26
Identity = 86/219 (39.27%), Postives = 116/219 (52.97%), Query Frame = 0
Query:  115 LSLTVGSLCLLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVVQLQGPAVDDVKGFDALT--PRQV-TILRWAAQTYLKAFPTLPSVLIWHKGQTLLRNGIMADPARGTGDVRVLAIVQQALSSNPEADGLCQPTYIPDLQVLPGKIEFMNYLPSMCQAVVLQPFDSNQGLIILGGNKRRDLTPKDLARARVIAQKVQTCLAE 330
            L L VG+L  + L TNRL T  L DSQ+R+D LGV  +  L+L GL  Q +  R  D V L GP     +GFD  +  P  V T L WA+   L    T  S+++W+ GQ LLR GI+  P  G     +L  VQQ            +P Y+ DL+V PG+IEF +YLP   Q V+ QP   ++G++ILG N  R  T +D      IA K+   L++
Sbjct:   48 LPLVVGALGGVLLFTNRLLTPLLTDSQARSDALGVILSALLILTGLLWQRVQPRSPDAVDLVGP-----EGFDLASDLPEPVKTELAWASHILLTNTVT-KSLVVWYDGQVLLRRGILG-PVAGVKPGPILERVQQK----------QRPVYLVDLKVYPGRIEF-DYLPENTQGVICQPL-GDRGVLILGANAPRSYTQQDENWVEAIAAKLDHTLSQ 247          
BLAST of EWM27987.1 vs. NCBI_GenBank
Match: gi|873233034|emb|CEM04109.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 109.768 bits (273), Expect = 1.187e-24
Identity = 72/217 (33.18%), Postives = 116/217 (53.46%), Query Frame = 0
Query:  109 FIRSDALSLTVGSLCLLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVVQLQGPAVDDVKGFDALTPRQVTILRWAAQTYLKAFPTLPSVLIW-------HKGQTLLRNGIMADPARGTGDVRVLAIVQQALSSNPEADGLCQPTYIPDLQVLPGKIEFMNYLPSMCQAVVLQPF---DSNQGLIILGGNKRRDLTPKDLA 315
            F     +S+ +GS CLLA++ NRL     + SQ R D+L   ++ GL+L G+ L+DIT +EAD V+L    +       A   +Q  +LRWA+++ L+  P   SV+++        +   +LR+G M        D+    I++ A SS     G+     + DL+ LPG++E + YLPS   +VV+QPF   D   G+++ G N+ R +T + LA
Sbjct:   17 FFVQPKVSIAIGSFCLLAILINRLIDITAYASQGRADLLATLASAGLVLIGVALEDITAKEADRVELDAANLIRQAEATAADEQQEGLLRWASESLLRGTP-YRSVVVFIADDSDLSRASIVLRHGYMGQDLSSV-DLTSSPILRSAFSSAKA--GISDAVCLQDLKFLPGRVE-LTYLPSNVPSVVMQPFTTSDGRPGVVVCGTNRPRSVTARHLA 228          
BLAST of EWM27987.1 vs. NCBI_GenBank
Match: gi|499929997|ref|WP_011610731.1| (cofactor assembly of complex C subunit B [Trichodesmium erythraeum] >gi|110165803|gb|ABG50343.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101])

HSP 1 Score: 108.227 bits (269), Expect = 2.045e-24
Identity = 77/216 (35.65%), Postives = 114/216 (52.78%), Query Frame = 0
Query:  115 LSLTVGSLCLLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVVQLQGPAVDDVKGFDALTPRQVTILRWAAQTYLKAFPTLPSVLIWHKGQTLLRNGIMADPARGTGDVRVLAIVQQALSSNPEADGLCQPTYIPDLQVLPGKIEFMNYLPSMCQAVVLQPFDSNQGLIILGGNKRRDLTPKDLARARVIAQKVQTCLAE 330
            L +  G L    L+TNR +T  L  SQ+R+D++GV  +  L+L GL  Q I  R  D V+L G +  + +    L+    T L WA+   L    T  +V+IWH+ + LLR GI+   +     ++   I++Q L       G  +P Y+ DL+V PG+IEF NYLP   Q V+ QP  +N G++ILG N  R  T +D      IA K+   L++
Sbjct:   13 LPIIAGGLGATLLMTNRFFTPNLLASQTRSDVVGVILSAFLILTGLLWQQIQPRSPDTVKLIGKS--EFELLPELSEIVKTELAWASSLLLTNTVT-KTVIIWHQEKVLLRRGILPSESY----IKPGTILKQVL-------GKQKPIYLVDLKVYPGRIEF-NYLPENTQGVICQPLGNN-GVMILGANAPRSYTKQDENWISGIADKLTDTLSK 212          
BLAST of EWM27987.1 vs. NCBI_GenBank
Match: gi|504977206|ref|WP_015164308.1| (cofactor assembly of complex C subunit B [Pseudanabaena sp. PCC 7367] >gi|427989080|gb|AFY69335.1| hypothetical protein Pse7367_1037 [Pseudanabaena sp. PCC 7367])

HSP 1 Score: 107.842 bits (268), Expect = 4.704e-24
Identity = 78/220 (35.45%), Postives = 118/220 (53.64%), Query Frame = 0
Query:  115 LSLTVGSLCLLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVVQLQGPAVDDVKGFDALTPRQVTILRWAAQTYLKAFPTLPSVLIWHKGQTLLRNGIMA--DPARGTGDVRVL--AIVQQALSSNPEADGLCQPTYIPDLQVLPGKIEFMNYLPSMCQAVVLQPFDSNQGLIILGGNKRRDLTPKDLARARVIAQKVQTCLAE 330
            L L VG +   AL  NRL T  L +SQSR+D +G+  +  L+L  L  Q +  +  + VQL G  V ++    +LTP Q   L WA+ T L    T  S++IW+  + LLR GIM   D ++   + ++   AI+ ++L +        +PTY+  L + PG++EF +YLP   Q V++QP D  +G IILG N  R  T +D      IA K+   L++
Sbjct:    5 LPLIVGIIGGTALFINRLLTPMLTESQSRSDAMGILESAILILIALLWQQVQPKPPESVQLVGAEVFEIDP--SLTPNQQAELAWASHTLLTNTIT-KSIVIWYDDRILLRRGIMPKQDQSKSKNESKIEPGAILARSLKTQ-------KPTYLVKLALYPGRLEF-DYLPENTQGVIVQPID-ERGAIILGANAPRSYTKQDENWIAAIAAKLAYSLSD 212          
BLAST of EWM27987.1 vs. NCBI_GenBank
Match: gi|1057518378|ref|WP_068815809.1| (cofactor assembly of complex C subunit B [Phormidesmis priestleyi])

HSP 1 Score: 106.686 bits (265), Expect = 7.382e-24
Identity = 77/219 (35.16%), Postives = 115/219 (52.51%), Query Frame = 0
Query:  115 LSLTVGSLCLLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVVQLQGPAVDDVKGFDALT--PRQV-TILRWAAQTYLKAFPTLPSVLIWHKGQTLLRNGIMADPARGTGDVRVLAIVQQALSSNPEADGLCQPTYIPDLQVLPGKIEFMNYLPSMCQAVVLQPFDSNQGLIILGGNKRRDLTPKDLARARVIAQKVQTCLAE 330
            L + VGS+  + L TNR  T  L DSQ+R+D LGV  +  L+L GL  Q +  R  + V+L G      +GF+     P  V T L W +   L    T  S+++WH+G+ LLR GI++       +V+  AI+Q+ L  +       QP Y+  L + PG+ EF +YLP   Q V+ QP  + +G +ILG N  R  T +D      IA+K+   L++
Sbjct:   13 LPIVVGSIAGILLFTNRFLTSSLTDSQARSDALGVILSALLILTGLLWQRVQSRTPESVELVGE-----QGFELAPDLPDAVKTELAWMSHLLLTNTVT-KSIVVWHRGKVLLRRGILSP----NTEVKPGAILQRVLDKH-------QPIYLVALAIYPGRFEF-DYLPENTQGVICQPIGA-EGALILGANAPRSYTKQDENWVAAIAEKLDNTLSQ 212          
BLAST of EWM27987.1 vs. NCBI_GenBank
Match: gi|1130430777|ref|WP_075599524.1| (cofactor assembly of complex C subunit B [Oscillatoriales cyanobacterium 'hensonii'] >gi|1129071292|gb|OLP17321.1| hypothetical protein BST81_16070 [Oscillatoriales cyanobacterium 'hensonii'])

HSP 1 Score: 106.301 bits (264), Expect = 1.077e-23
Identity = 76/204 (37.25%), Postives = 110/204 (53.92%), Query Frame = 0
Query:  130 NRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVVQLQGPAVDDVKGFDALT--PRQVTI-LRWAAQTYLKAFPTLPSVLIWHKGQTLLRNGIMADPARGTGDVRVLAIVQQALSSNPEADGLCQPTYIPDLQVLPGKIEFMNYLPSMCQAVVLQPFDSNQGLIILGGNKRRDLTPKDLARARVIAQKVQTCLAE 330
            NRL+T  L DSQ+R+D LGV  +  L+L GL  + +  R  DVV L G      +GF+  +  P  V I L WA++  L    T  S+++W+ GQ LLR GI+        +V+   I+Q+ L+         +P Y+ DL+V PG+IEF NYLP   Q V+ QP    +G++ILG N  R  T +D      IA+K+   L +
Sbjct:   28 NRLWTAELTDSQARSDALGVILSALLILTGLLWERVQPRSPDVVLLTGE-----EGFELASDLPEVVKIELAWASRILLTNTATR-SLVVWYGGQVLLRRGILGP----VPEVQPGPILQRVLTQQ-------KPVYLVDLKVYPGRIEF-NYLPENTQGVICQPI-GGEGVLILGANAPRSYTQQDENWVEAIAEKLANSLGQ 212          
BLAST of EWM27987.1 vs. NCBI_GenBank
Match: gi|515373154|ref|WP_016872552.1| (hypothetical protein [Chlorogloeopsis fritschii])

HSP 1 Score: 105.531 bits (262), Expect = 2.209e-23
Identity = 81/220 (36.82%), Postives = 116/220 (52.73%), Query Frame = 0
Query:  115 LSLTVGSLCLLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVVQLQGPAVDDVKGFDALTP----RQVTILRWAAQTYLKAFPTLPSVLIWHKGQTLLRNGIMADPARGTGDVRVLAIVQQALSSNPEADGLCQPTYIPDLQVLPGKIEFMNYLPSMCQAVVLQPFDSNQGLIILGGNKRRDLTPKDLARARVIAQKVQTCLAE 330
            L + VG L  + L+ NRL T  + DSQ+R D+LGV  +  L+L GL  Q +  R  D V+L G      +GF  L P    R  T L WA+   L    T  S++++++G+ LLR GI++  +    +V+   I+++ L          QP Y+ DL+V PG+IEF +YLP   Q V+ QP   NQG +ILG N  R  T +D      IA K+   L E
Sbjct:   13 LPIFVGGLGAVLLLVNRLLTPQITDSQARADVLGVILSAVLILIGLIWQQVQPRSPDAVELVGE-----EGF-VLAPDLPDRVKTELAWASHLLLTNTVTR-SLVVFYQGKVLLRRGILSTKS----EVKPGVILKRVLEKQ-------QPVYLVDLKVYPGRIEF-DYLPENTQGVICQPI-GNQGALILGANAPRSYTKQDENWIAGIADKLAVTLNE 212          
The following BLAST results are available for this feature:
BLAST of EWM27987.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110328|gb|EWM27987.1|0.000e+0100.00Protein of unknown function DUF2930 [Nannochlorops... [more]
gi|298707779|emb|CBJ30210.1|5.462e-3535.91conserved unknown protein [Ectocarpus siliculosus][more]
gi|752598920|ref|WP_041268307.1|3.618e-2739.27hypothetical protein [Geitlerinema sp. PCC 7407][more]
gi|427984716|gb|AFY65860.1|1.069e-2639.27hypothetical protein GEI7407_1366 [Geitlerinema sp... [more]
gi|873233034|emb|CEM04109.1|1.187e-2433.18unnamed protein product [Vitrella brassicaformis C... [more]
gi|499929997|ref|WP_011610731.1|2.045e-2435.65cofactor assembly of complex C subunit B [Trichode... [more]
gi|504977206|ref|WP_015164308.1|4.704e-2435.45cofactor assembly of complex C subunit B [Pseudana... [more]
gi|1057518378|ref|WP_068815809.1|7.382e-2435.16cofactor assembly of complex C subunit B [Phormide... [more]
gi|1130430777|ref|WP_075599524.1|1.077e-2337.25cofactor assembly of complex C subunit B [Oscillat... [more]
gi|515373154|ref|WP_016872552.1|2.209e-2336.82hypothetical protein [Chlorogloeopsis fritschii][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2684rna2684Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications