EWM28037.1, cds2668 (CDS) Nannochloropsis gaditana

Overview
NameEWM28037.1
Unique Namecds2668
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:940730..940942 +
Alignment locationCM002459.1:941079..941219 +
Alignment locationCM002459.1:941428..942045 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28037.1
ProductArv1 protein
Orig transcript idgnl|cribi|Naga_100008g45.7929.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:940730..940942 +
CM002459.1supercontigCM002459.1:941079..941219 +
CM002459.1supercontigCM002459.1:941428..942045 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR007290Arv1
Homology
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|585110378|gb|EWM28037.1| (Arv1 protein [Nannochloropsis gaditana])

HSP 1 Score: 660.988 bits (1704), Expect = 0.000e+0
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0
Query:    1 MAVTAVMSPSSHLIRPLKENIPSPKADAGAAPALVTIHGDDGCSLCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVVAAAIALNERYNQQRKEDSVKRGNVEFYAAALPFVVGLSCKCLLRLVAFHVDASCTNLYLV 323
            MAVTAVMSPSSHLIRPLKENIPSPKADAGAAPALVTIHGDDGCSLCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVVAAAIALNERYNQQRKEDSVKRGNVEFYAAALPFVVGLSCKCLLRLVAFHVDASCTNLYLV
Sbjct:    1 MAVTAVMSPSSHLIRPLKENIPSPKADAGAAPALVTIHGDDGCSLCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVVAAAIALNERYNQQRKEDSVKRGNVEFYAAALPFVVGLSCKCLLRLVAFHVDASCTNLYLV 323          
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|330840914|ref|XP_003292452.1| (hypothetical protein DICPUDRAFT_157173 [Dictyostelium purpureum] >gi|325077292|gb|EGC31014.1| hypothetical protein DICPUDRAFT_157173 [Dictyostelium purpureum])

HSP 1 Score: 106.686 bits (265), Expect = 1.411e-23
Identity = 69/229 (30.13%), Postives = 121/229 (52.84%), Query Frame = 0
Query:   45 LCIECGKPVTEGLYREYSK---DNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEF-AQLWRMALVLTLVDTHIKYAIYVHYSSISPP---NHLDLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVVAAA 266
            +CIECG+PV + +Y+E+ K    NIRL+RC  C  +AD+ +EY+ ++V LDL LH+  A+RH+LFNRQP+       Q  ++ +V    +++IK+  +  Y    P     ++D  D   Y       I L +  E    FG+  ++++ ++AVR      Q R P             LV A++  +FG+  ++ +M+WD  F   +++++ VL S   A++  +  +
Sbjct:    2 ICIECGRPVND-VYKEFGKAGSGNIRLTRCSCCQQIADKYVEYDFIIVFLDLFLHKAQAYRHLLFNRQPYRDFGIPIQYVKVLIVYIFFESYIKWLRFKEYGQHQPGVPFYYIDWHDDVPYDRYWF--IFLTAIAE----FGM--YISSIIVAVRFIY---QSRYPIIK-------YNYLVMAIILSSFGKGFLVLMMIWDYPFSFGSILNIFVLSSNVVAIKVFLDTS 211          
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|299116352|emb|CBN76154.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 105.531 bits (262), Expect = 5.390e-22
Identity = 56/152 (36.84%), Postives = 90/152 (59.21%), Query Frame = 0
Query:   45 LCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEF-AQLWRMALVLTLVDTHIKYAIYVHYSSISPPNHL--------DLTDTPKYQLSLLLRILLLSFVEHFVF-FGIIVFLTT 186
            +C+ECG+PV   L+REY+K NIRL RC +C +VAD+ IE+E VL+ +DLALHR+ A+RH+LFN +P +   F  +LW++ + +  +D H+++      ++ +             D    P ++   L   LL + VEH  F  G ++F T+
Sbjct:   37 VCVECGRPVAL-LFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAAAAAAQESAGSVVVAGDGGGDPFWEAGGL---LLAAVVEHACFAAGAVLFATS 184          
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|66804067|ref|XP_635839.1| (hypothetical protein DDB_G0290221 [Dictyostelium discoideum AX4] >gi|74851903|sp|Q54GD9.1|ARV1_DICDI RecName: Full=Protein arv1 homolog >gi|60464172|gb|EAL62332.1| hypothetical protein DDB_G0290221 [Dictyostelium discoideum AX4])

HSP 1 Score: 99.7525 bits (247), Expect = 4.844e-21
Identity = 64/224 (28.57%), Postives = 116/224 (51.79%), Query Frame = 0
Query:   45 LCIECGKPVTEGLYREYSK---DNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEF-AQLWRMALVLTLVDTHIKYAIYVHYSSI-SPP--NHLDLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRA 261
            +CIECG+PV + +Y+E+ K    NIRL+RC  C   AD+ +EY+ ++V LDL LH+  A+RH+LFNRQP+       Q  ++ +V    +++IK+  +  Y    S P   ++D  D   Y     + +  ++           V++ + +L+VR      + R P             L+ A++  +FG+  ++ +M+WD  F   +++++ VL S   A++ 
Sbjct:    2 ICIECGRPVND-VYKEFGKAGSGNIRLTRCASCNQTADKYVEYDFIIVFLDLFLHKAQAYRHLLFNRQPYRDFGIPIQYIKVLVVYIFFESYIKWLRFKEYEQHPSGPAFYYIDWQDDVPYDRYWFIFVTAIA--------EFAVYILSIILSVRFIY---ESRYPIIK-------YNYLIMAIILSSFGKGFLVLMMIWDYPFSFGSILNIFVLSSNVVAIKV 206          
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|1183503899|gb|ORZ27497.1| (Arv1 protein [Lobosporangium transversale])

HSP 1 Score: 98.5969 bits (244), Expect = 1.110e-20
Identity = 76/270 (28.15%), Postives = 132/270 (48.89%), Query Frame = 0
Query:   45 LCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFA-QLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRL--HLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVAN--LISLLVLLSQWQALRAVVAAAIALNERYNQQRKEDSVKRGNVEFYAAALPFVVGLSCKCLLRLV 309
            +C+ECG  V+  LY EYSK NIRL+ CE C  +AD+ +E++ V++ +D+ LH+ P +RH+LFNR P+  L     ++++ ++L L D +IK+                + D    Q +L+ + L      + +F  II FL ++   VRL   LC           Y  T        AL+  +FG+ ++I +++WD   +  +  L++ +V  S  +AL      ++ L+  Y Q                  L  V G++C+ L+++V
Sbjct:    3 ICVECGAAVSS-LYTEYSKGNIRLTYCEHCKKLADKYVEHDFVIIFVDMVLHKKPVYRHLLFNRLPYRDLGIDPNVFKLGVLLILFDVYIKW--------FRLEQEAVVVDADFAQHALVFQYL------YILFLCIIEFL-SFHFGVRLIVSLCYGGRYAILKYNYITT--------ALIISSFGKMLLILMVIWDYTELEHSWHLVNFIVFTSNIEAL------SVFLDTGYLQ----------------TTLVIVFGIACRILMQIV 226          
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|1173941092|gb|OQR90332.1| (transmembrane protein [Achlya hypogyna])

HSP 1 Score: 98.5969 bits (244), Expect = 2.047e-20
Identity = 79/256 (30.86%), Postives = 126/256 (49.22%), Query Frame = 0
Query:   19 ENIPSPKADAGAAPALVTIHGDDGCSLCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIK-------YAIYVHYSSISPPNHLDLTDTPKYQLSLL-LRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQ---ALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVV 263
            EN+P+       AP   T      C  C+ECG  V    YR+Y K NIRL+ C  C    D+ +E+E +L+ +DL L +  A+RH+L NR+P   L + Q+ +M  V+ ++D + K         +Y   +SI    +  ++    +Q+S L L   +L+ VE+FV+ G +     W LAVRLH            P  R+F   K +Q   AL   NFG+      ++W+  + V ++I  +V+ S +  L+  V
Sbjct:    4 ENMPA------TAPPKSTPRRLSCC--CVECGY-VVSSTYRDYGKGNIRLTICPNCNHTVDKYVEFEAILIMIDLMLGKPQAYRHLLHNRRP--LLSYQQVLKMFAVIVMLDWNTKAYLAERDAGVYFRTNSI----YKTISTYSVFQISQLGLHYFILAVVENFVYMGAL-----W-LAVRLH------------PRWRSFSRSKELQFLGALCLSNFGKLFAWLTVIWEYNWTVVHVIGAIVVCSNYLVLKIYV 226          
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|672817473|gb|KFH62378.1| (hypothetical protein MVEG_11587 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 97.4413 bits (241), Expect = 3.253e-20
Identity = 64/228 (28.07%), Postives = 117/228 (51.32%), Query Frame = 0
Query:   46 CIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFA-QLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDTPKYQLSLL---LRILLLSFVEHFVF-FGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVAN--LISLLVLLSQWQALRAVVAAA 266
            C+ECG  V+  LY EYSK NIRL+ CE C  +AD+ +E++ V++ +D+ LH+ P +RH+LFNR P+  L     ++++ ++L L D +IK+              + + ++   Q +L+   L IL L  +E   F FG+ + ++ W              G         ++T  L+ +    +FG+ ++I +++WD   +  +  L++ +V  S  +AL   + A 
Sbjct:    4 CVECGAAVSS-LYTEYSKGNIRLTYCEHCNKLADKYVEHDFVIIFVDMILHKKPVYRHLLFNRLPYRDLGIDPNVYKLGILLILFDVYIKW--------FKLEQEVTMINSGFAQHALVFQYLYILFLCIIEFLSFHFGVRLIISLW-------------YGGRYAILKYNYITTTLIIS----SFGKMLLILMVIWDYTELEHSWLLVNFIVFTSNIEALSVFLDAG 205          
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|661180563|emb|CDH56847.1| (arv1-like family protein [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 96.6709 bits (239), Expect = 7.589e-20
Identity = 72/222 (32.43%), Postives = 115/222 (51.80%), Query Frame = 0
Query:   46 CIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNR--QPHAKLEFAQLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDT-----PKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWD-PAFVVANLISLLVLLSQWQAL 259
            C+ECG  V   LY +YSKDNIRL+ C+ C   AD+ IE++ V++ +D+ LH+   +RH+LFNR  Q   ++E   + R A++L L + ++K+     Y       H D   T       YQ   +L + ++ FV          F     LA+RL+L   Q   P    Y   +V+     AL+  +FG+ ++I +++WD      + L+SL+VL S  +AL
Sbjct:    4 CVECGASV-RNLYTQYSKDNIRLTSCDQCNEFADKYIEHDFVIIFIDMLLHKPQVYRHLLFNRISQAGNRIE-PHVTRFAILLILFEVYMKWFRLETY-------HADYETTFVQHPLHYQYMYILTLCIIEFV---------AFHCCVRLAIRLYLIYQQPSSPKQIRY--NYVS----MALIISSFGKMLLILMVIWDYKQLEYSWLVSLIVLASNAEAL 201          
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|669143374|ref|XP_008607249.1| (hypothetical protein SDRG_03394 [Saprolegnia diclina VS20] >gi|530740946|gb|EQC39188.1| hypothetical protein SDRG_03394 [Saprolegnia diclina VS20])

HSP 1 Score: 96.6709 bits (239), Expect = 8.066e-20
Identity = 71/229 (31.00%), Postives = 117/229 (51.09%), Query Frame = 0
Query:   46 CIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIK-------YAIYVHYSSISPPNHLDLTDTPKYQLSLL-LRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQ---ALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVV 263
            C+ECG  V+   YR+Y K NIRL+ C  C    D+ +E+E +L+ +DL L +  A+RH+L NR+P   L + Q+ +M  V+ ++D + K         +Y   +SI       ++    +Q+S L L   +L+ VE+F++      LT W LAVR+H            P  R+F   K +Q   AL   NFG+      ++W+  + V ++I  +V+ S +  L+  V
Sbjct:   18 CVECGNVVSST-YRDYGKGNIRLTICPNCNHTVDKYVEFEAILIMIDLMLGKPQAYRHLLHNRRP--LLSYQQVLKMFAVIVMLDWNTKAYLAERDAGVYFRTNSIYKT----ISTYSVFQISQLGLHYFILAVVENFIY-----MLTLW-LAVRVH------------PRWRSFSRSKELQFLGALCLSNFGKLFAWLTVIWEYNWTVVHVIGAIVVCSNYLVLKIYV 221          
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|813103172|ref|XP_012194048.1| (hypothetical protein SPRG_18832 [Saprolegnia parasitica CBS 223.65] >gi|641541927|gb|KDO35672.1| hypothetical protein SPRG_18832 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 96.2857 bits (238), Expect = 1.140e-19
Identity = 72/229 (31.44%), Postives = 117/229 (51.09%), Query Frame = 0
Query:   46 CIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIK-------YAIYVHYSSISPPNHLDLTDTPKYQLSLL-LRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQ---ALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVV 263
            C+ECG  V+   YR+Y K NIRL+ C  C    D+ +E+E +L+ +DL L +  A+RH+L NR+P   L + Q+ +M  V+ ++D + K         +Y   +SI       ++    +Q+S L L   +L+ VE+FV+      LT W LAVR+H            P  R+F   K +Q   AL   NFG+      ++W+  + V ++I  +V+ S +  L+  V
Sbjct:   18 CVECGYVVSST-YRDYGKGNIRLTICPNCNHTVDKYVEFEAILIMIDLMLGKPQAYRHLLHNRRP--LLSYQQVLKMFAVIVMLDWNTKAYLAERDAGVYFRTNSIYKT----ISTYSVFQISQLGLHYFILAVVENFVY-----MLTLW-LAVRVH------------PRWRSFSRSKELQFLGALCLSNFGKLFAWLTVIWEYNWTVVHVIGAIVVCSNYLVLKIYV 221          
The following BLAST results are available for this feature:
BLAST of EWM28037.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110378|gb|EWM28037.1|0.000e+0100.00Arv1 protein [Nannochloropsis gaditana][more]
gi|330840914|ref|XP_003292452.1|1.411e-2330.13hypothetical protein DICPUDRAFT_157173 [Dictyostel... [more]
gi|299116352|emb|CBN76154.1|5.390e-2236.84conserved unknown protein [Ectocarpus siliculosus][more]
gi|66804067|ref|XP_635839.1|4.844e-2128.57hypothetical protein DDB_G0290221 [Dictyostelium d... [more]
gi|1183503899|gb|ORZ27497.1|1.110e-2028.15Arv1 protein [Lobosporangium transversale][more]
gi|1173941092|gb|OQR90332.1|2.047e-2030.86transmembrane protein [Achlya hypogyna][more]
gi|672817473|gb|KFH62378.1|3.253e-2028.07hypothetical protein MVEG_11587 [Mortierella verti... [more]
gi|661180563|emb|CDH56847.1|7.589e-2032.43arv1-like family protein [Lichtheimia corymbifera ... [more]
gi|669143374|ref|XP_008607249.1|8.066e-2031.00hypothetical protein SDRG_03394 [Saprolegnia dicli... [more]
gi|813103172|ref|XP_012194048.1|1.140e-1931.44hypothetical protein SPRG_18832 [Saprolegnia paras... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2676rna2676Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications