EWM28037.1, cds2668 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|585110378|gb|EWM28037.1| (Arv1 protein [Nannochloropsis gaditana]) HSP 1 Score: 660.988 bits (1704), Expect = 0.000e+0 Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0
Query: 1 MAVTAVMSPSSHLIRPLKENIPSPKADAGAAPALVTIHGDDGCSLCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVVAAAIALNERYNQQRKEDSVKRGNVEFYAAALPFVVGLSCKCLLRLVAFHVDASCTNLYLV 323
MAVTAVMSPSSHLIRPLKENIPSPKADAGAAPALVTIHGDDGCSLCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVVAAAIALNERYNQQRKEDSVKRGNVEFYAAALPFVVGLSCKCLLRLVAFHVDASCTNLYLV
Sbjct: 1 MAVTAVMSPSSHLIRPLKENIPSPKADAGAAPALVTIHGDDGCSLCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVVAAAIALNERYNQQRKEDSVKRGNVEFYAAALPFVVGLSCKCLLRLVAFHVDASCTNLYLV 323
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|330840914|ref|XP_003292452.1| (hypothetical protein DICPUDRAFT_157173 [Dictyostelium purpureum] >gi|325077292|gb|EGC31014.1| hypothetical protein DICPUDRAFT_157173 [Dictyostelium purpureum]) HSP 1 Score: 106.686 bits (265), Expect = 1.411e-23 Identity = 69/229 (30.13%), Postives = 121/229 (52.84%), Query Frame = 0
Query: 45 LCIECGKPVTEGLYREYSK---DNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEF-AQLWRMALVLTLVDTHIKYAIYVHYSSISPP---NHLDLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVVAAA 266
+CIECG+PV + +Y+E+ K NIRL+RC C +AD+ +EY+ ++V LDL LH+ A+RH+LFNRQP+ Q ++ +V +++IK+ + Y P ++D D Y I L + E FG+ ++++ ++AVR Q R P LV A++ +FG+ ++ +M+WD F +++++ VL S A++ + +
Sbjct: 2 ICIECGRPVND-VYKEFGKAGSGNIRLTRCSCCQQIADKYVEYDFIIVFLDLFLHKAQAYRHLLFNRQPYRDFGIPIQYVKVLIVYIFFESYIKWLRFKEYGQHQPGVPFYYIDWHDDVPYDRYWF--IFLTAIAE----FGM--YISSIIVAVRFIY---QSRYPIIK-------YNYLVMAIILSSFGKGFLVLMMIWDYPFSFGSILNIFVLSSNVVAIKVFLDTS 211
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|299116352|emb|CBN76154.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 105.531 bits (262), Expect = 5.390e-22 Identity = 56/152 (36.84%), Postives = 90/152 (59.21%), Query Frame = 0
Query: 45 LCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEF-AQLWRMALVLTLVDTHIKYAIYVHYSSISPPNHL--------DLTDTPKYQLSLLLRILLLSFVEHFVF-FGIIVFLTT 186
+C+ECG+PV L+REY+K NIRL RC +C +VAD+ IE+E VL+ +DLALHR+ A+RH+LFN +P + F +LW++ + + +D H+++ ++ + D P ++ L LL + VEH F G ++F T+
Sbjct: 37 VCVECGRPVAL-LFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAAAAAAQESAGSVVVAGDGGGDPFWEAGGL---LLAAVVEHACFAAGAVLFATS 184
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|66804067|ref|XP_635839.1| (hypothetical protein DDB_G0290221 [Dictyostelium discoideum AX4] >gi|74851903|sp|Q54GD9.1|ARV1_DICDI RecName: Full=Protein arv1 homolog >gi|60464172|gb|EAL62332.1| hypothetical protein DDB_G0290221 [Dictyostelium discoideum AX4]) HSP 1 Score: 99.7525 bits (247), Expect = 4.844e-21 Identity = 64/224 (28.57%), Postives = 116/224 (51.79%), Query Frame = 0
Query: 45 LCIECGKPVTEGLYREYSK---DNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEF-AQLWRMALVLTLVDTHIKYAIYVHYSSI-SPP--NHLDLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRA 261
+CIECG+PV + +Y+E+ K NIRL+RC C AD+ +EY+ ++V LDL LH+ A+RH+LFNRQP+ Q ++ +V +++IK+ + Y S P ++D D Y + + ++ V++ + +L+VR + R P L+ A++ +FG+ ++ +M+WD F +++++ VL S A++
Sbjct: 2 ICIECGRPVND-VYKEFGKAGSGNIRLTRCASCNQTADKYVEYDFIIVFLDLFLHKAQAYRHLLFNRQPYRDFGIPIQYIKVLVVYIFFESYIKWLRFKEYEQHPSGPAFYYIDWQDDVPYDRYWFIFVTAIA--------EFAVYILSIILSVRFIY---ESRYPIIK-------YNYLIMAIILSSFGKGFLVLMMIWDYPFSFGSILNIFVLSSNVVAIKV 206
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|1183503899|gb|ORZ27497.1| (Arv1 protein [Lobosporangium transversale]) HSP 1 Score: 98.5969 bits (244), Expect = 1.110e-20 Identity = 76/270 (28.15%), Postives = 132/270 (48.89%), Query Frame = 0
Query: 45 LCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFA-QLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRL--HLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVAN--LISLLVLLSQWQALRAVVAAAIALNERYNQQRKEDSVKRGNVEFYAAALPFVVGLSCKCLLRLV 309
+C+ECG V+ LY EYSK NIRL+ CE C +AD+ +E++ V++ +D+ LH+ P +RH+LFNR P+ L ++++ ++L L D +IK+ + D Q +L+ + L + +F II FL ++ VRL LC Y T AL+ +FG+ ++I +++WD + + L++ +V S +AL ++ L+ Y Q L V G++C+ L+++V
Sbjct: 3 ICVECGAAVSS-LYTEYSKGNIRLTYCEHCKKLADKYVEHDFVIIFVDMVLHKKPVYRHLLFNRLPYRDLGIDPNVFKLGVLLILFDVYIKW--------FRLEQEAVVVDADFAQHALVFQYL------YILFLCIIEFL-SFHFGVRLIVSLCYGGRYAILKYNYITT--------ALIISSFGKMLLILMVIWDYTELEHSWHLVNFIVFTSNIEAL------SVFLDTGYLQ----------------TTLVIVFGIACRILMQIV 226
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|1173941092|gb|OQR90332.1| (transmembrane protein [Achlya hypogyna]) HSP 1 Score: 98.5969 bits (244), Expect = 2.047e-20 Identity = 79/256 (30.86%), Postives = 126/256 (49.22%), Query Frame = 0
Query: 19 ENIPSPKADAGAAPALVTIHGDDGCSLCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIK-------YAIYVHYSSISPPNHLDLTDTPKYQLSLL-LRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQ---ALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVV 263
EN+P+ AP T C C+ECG V YR+Y K NIRL+ C C D+ +E+E +L+ +DL L + A+RH+L NR+P L + Q+ +M V+ ++D + K +Y +SI + ++ +Q+S L L +L+ VE+FV+ G + W LAVRLH P R+F K +Q AL NFG+ ++W+ + V ++I +V+ S + L+ V
Sbjct: 4 ENMPA------TAPPKSTPRRLSCC--CVECGY-VVSSTYRDYGKGNIRLTICPNCNHTVDKYVEFEAILIMIDLMLGKPQAYRHLLHNRRP--LLSYQQVLKMFAVIVMLDWNTKAYLAERDAGVYFRTNSI----YKTISTYSVFQISQLGLHYFILAVVENFVYMGAL-----W-LAVRLH------------PRWRSFSRSKELQFLGALCLSNFGKLFAWLTVIWEYNWTVVHVIGAIVVCSNYLVLKIYV 226
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|672817473|gb|KFH62378.1| (hypothetical protein MVEG_11587 [Mortierella verticillata NRRL 6337]) HSP 1 Score: 97.4413 bits (241), Expect = 3.253e-20 Identity = 64/228 (28.07%), Postives = 117/228 (51.32%), Query Frame = 0
Query: 46 CIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFA-QLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDTPKYQLSLL---LRILLLSFVEHFVF-FGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVAN--LISLLVLLSQWQALRAVVAAA 266
C+ECG V+ LY EYSK NIRL+ CE C +AD+ +E++ V++ +D+ LH+ P +RH+LFNR P+ L ++++ ++L L D +IK+ + + ++ Q +L+ L IL L +E F FG+ + ++ W G ++T L+ + +FG+ ++I +++WD + + L++ +V S +AL + A
Sbjct: 4 CVECGAAVSS-LYTEYSKGNIRLTYCEHCNKLADKYVEHDFVIIFVDMILHKKPVYRHLLFNRLPYRDLGIDPNVYKLGILLILFDVYIKW--------FKLEQEVTMINSGFAQHALVFQYLYILFLCIIEFLSFHFGVRLIISLW-------------YGGRYAILKYNYITTTLIIS----SFGKMLLILMVIWDYTELEHSWLLVNFIVFTSNIEALSVFLDAG 205
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|661180563|emb|CDH56847.1| (arv1-like family protein [Lichtheimia corymbifera JMRC:FSU:9682]) HSP 1 Score: 96.6709 bits (239), Expect = 7.589e-20 Identity = 72/222 (32.43%), Postives = 115/222 (51.80%), Query Frame = 0
Query: 46 CIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNR--QPHAKLEFAQLWRMALVLTLVDTHIKYAIYVHYSSISPPNHLDLTDT-----PKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWD-PAFVVANLISLLVLLSQWQAL 259
C+ECG V LY +YSKDNIRL+ C+ C AD+ IE++ V++ +D+ LH+ +RH+LFNR Q ++E + R A++L L + ++K+ Y H D T YQ +L + ++ FV F LA+RL+L Q P Y +V+ AL+ +FG+ ++I +++WD + L+SL+VL S +AL
Sbjct: 4 CVECGASV-RNLYTQYSKDNIRLTSCDQCNEFADKYIEHDFVIIFIDMLLHKPQVYRHLLFNRISQAGNRIE-PHVTRFAILLILFEVYMKWFRLETY-------HADYETTFVQHPLHYQYMYILTLCIIEFV---------AFHCCVRLAIRLYLIYQQPSSPKQIRY--NYVS----MALIISSFGKMLLILMVIWDYKQLEYSWLVSLIVLASNAEAL 201
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|669143374|ref|XP_008607249.1| (hypothetical protein SDRG_03394 [Saprolegnia diclina VS20] >gi|530740946|gb|EQC39188.1| hypothetical protein SDRG_03394 [Saprolegnia diclina VS20]) HSP 1 Score: 96.6709 bits (239), Expect = 8.066e-20 Identity = 71/229 (31.00%), Postives = 117/229 (51.09%), Query Frame = 0
Query: 46 CIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIK-------YAIYVHYSSISPPNHLDLTDTPKYQLSLL-LRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQ---ALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVV 263
C+ECG V+ YR+Y K NIRL+ C C D+ +E+E +L+ +DL L + A+RH+L NR+P L + Q+ +M V+ ++D + K +Y +SI ++ +Q+S L L +L+ VE+F++ LT W LAVR+H P R+F K +Q AL NFG+ ++W+ + V ++I +V+ S + L+ V
Sbjct: 18 CVECGNVVSST-YRDYGKGNIRLTICPNCNHTVDKYVEFEAILIMIDLMLGKPQAYRHLLHNRRP--LLSYQQVLKMFAVIVMLDWNTKAYLAERDAGVYFRTNSIYKT----ISTYSVFQISQLGLHYFILAVVENFIY-----MLTLW-LAVRVH------------PRWRSFSRSKELQFLGALCLSNFGKLFAWLTVIWEYNWTVVHVIGAIVVCSNYLVLKIYV 221
BLAST of EWM28037.1 vs. NCBI_GenBank
Match: gi|813103172|ref|XP_012194048.1| (hypothetical protein SPRG_18832 [Saprolegnia parasitica CBS 223.65] >gi|641541927|gb|KDO35672.1| hypothetical protein SPRG_18832 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 96.2857 bits (238), Expect = 1.140e-19 Identity = 72/229 (31.44%), Postives = 117/229 (51.09%), Query Frame = 0
Query: 46 CIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIK-------YAIYVHYSSISPPNHLDLTDTPKYQLSLL-LRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQ---ALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVV 263
C+ECG V+ YR+Y K NIRL+ C C D+ +E+E +L+ +DL L + A+RH+L NR+P L + Q+ +M V+ ++D + K +Y +SI ++ +Q+S L L +L+ VE+FV+ LT W LAVR+H P R+F K +Q AL NFG+ ++W+ + V ++I +V+ S + L+ V
Sbjct: 18 CVECGYVVSST-YRDYGKGNIRLTICPNCNHTVDKYVEFEAILIMIDLMLGKPQAYRHLLHNRRP--LLSYQQVLKMFAVIVMLDWNTKAYLAERDAGVYFRTNSIYKT----ISTYSVFQISQLGLHYFILAVVENFVY-----MLTLW-LAVRVH------------PRWRSFSRSKELQFLGALCLSNFGKLFAWLTVIWEYNWTVVHVIGAIVVCSNYLVLKIYV 221 The following BLAST results are available for this feature:
BLAST of EWM28037.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|