rna2676, rna2676 (mRNA) Nannochloropsis gaditana

Overview
Namerna2676
Unique Namerna2676
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1706
Alignment locationCM002459.1:940730..942045 +

Link to JBrowse

Properties
Property NameValue
ProductArv1 protein
Orig transcript idgnl|cribi|Naga_100008g45.7929.mrna
Orig protein idgnl|cribi|Naga_100008g45.7929
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:940730..942045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g45gene2559Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2676rna2676-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28037.1cds2668Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2676 ID=rna2676|Name=rna2676|organism=Nannochloropsis gaditana|type=mRNA|length=1706bp
GCCGGGTGAGCACTTCCTCAGCTGCCTCTCCCCCCCAAACGCCACCTCAG
TACTCCTTTCTCTCACCGATGCTCCTCCACATTGTTCGCTACCAGGACCA
TGCTACGTGTCAGAGGTATGATTGCACCTGCCGCAATCCGGCGGGGCCCC
TTAGCTGGTTTTTGGTCTCGGTCGCCCGTGCTACAGCCTCGCAGGCGTCT
GGCCTCCACCACATTTGCGGACGCGTCGCCTCTGGCCTCGTCCTCCGCCA
CAGTGTCATCCTCCTCAAGTACTTCTCTACGACCTTTGGCCTACTGGCTT
CTAGGCACCGGCGCTTTGGTGGCTGGCATGGTCACAGTGGGCGGTATAAC
GCGCCTGACTAAGTCTGGCCTCTCCATGACCGACTGGAGGGTGCAGGGCT
CCCTCCCTCCACTAAACGAGACGGAGTGGCAGGCGGAATTCGCCCGCTAC
AAGCAGTTCCCTGAGTATCAGCAACGACAGAGCATGACTCTGGACGAGTT
CAAGTTCATATTTTATTGGGAGTGGGGCCACCGGATGATGGGCCGATTTA
TTGGCCTGGCGTACGGCCTGCCATTTGCCTATTTCGCGGTCAGGGGCCGC
ATTCCACGCAGCCTCTACCCACGACTCGCCACGCTCTTCGCCCTGGGCGG
GGGGCAGGGTCTGATCGGCTGGTGGATGGTGAAGAGCGGCTTGGAAATGG
ACCCGCAACAACGGAAGGAGATCCGAGTCAGCCCCTACAGACTAACGGCC
CATCTCGGCATGGCATTTACCACCTTCTCCCTCTTGATCTGGACAGGGAT
GGACCTCTTCCACCCTCCAGAGCACGCCGTGCGAGCCGCTACGGCCCTCA
AAACACAGCTTGCCGCGGCCGCACGCACTGGGGGCCCACAGGCATCCCAG
GAACTGCTCACTCGGGTCCTGCGTGTCCGCCATTTGGGGATTGCGTCCGC
TGGTCTTCTGGGCGTTACCATCCTCTCCGGGGCCTTTGTGGCCGGCAACG
ACGCGGGAAGGGCCTACAACACCTTTCCCAAGATGGGCGAGGATTTTTGG
ATCCCTCCAGAGGTGTGGGAGATGGAGCCCAAGTGGCGGAATTTCTTCGA
GAACACGGCCTTGGTGCAGCTCGACCATCGCGTTCTCGCGCTCTCCACGG
CGGGCTTGATCTCAGCCACATTTCTCGCGGCCCGACGGGGGCAGGTATGG
AGGGTGCTGCCTGCTGAGACGAGGACGGCCCTGACCGCCACGGTGGGGAT
GGCGGGGGCGCAGGTGGCGCTGGGGATCTCGACGCTCTTGATGTACGTCC
CCGTGCCCCTAGCGGCCGCACACCAGGCGGGGTCTCTGGTCCTCCTCTCC
CTTTTGTCGTGGTCAGTGCATTCCCTTAAGTTCTTAAAAAAGCTGCCCGT
GCAGTCGGTCCAGCGATCTTTACCAAAAAGCGTTGGGAAAGGGGGGGCGG
AAGGGGCCTCTGCGGCGGTGGAGGGGGGAAAGATGGTGGCACAGCTGTGA
CCTTAAGGAGGGTGTTCAAATTCTATTGGGTAGGAGAGAAAGGTGTGAAG
GCAAAGCAGAAGTTACCATAGCCCTGCTGATTTGTGCATATGGGGAGATC
CAGGGATATGTTGCCACTCTAAAGAAGACAAGAGAGCGAGATAAAGCCTT
CGATTGGAACCGACCGCTCCGAAAAGGAATACCTGTTGACCACCAACCAT
GTCTGA
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protein sequence of rna2676

>rna2676-protein ID=rna2676-protein|Name=rna2676|organism=Nannochloropsis gaditana|type=polypeptide|length=323bp
MAVTAVMSPSSHLIRPLKENIPSPKADAGAAPALVTIHGDDGCSLCIECG
KPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPA
WRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIKYAIYVHYSSISPPNHL
DLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQL
RGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLL
VLLSQWQALRAVVAAAIALNERYNQQRKEDSVKRGNVEFYAAALPFVVGL
SCKCLLRLVAFHVDASCTNLYLV
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mRNA from alignment at CM002459.1:940730..942045+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2676 ID=rna2676|Name=rna2676|organism=Nannochloropsis gaditana|type=mRNA|length=1316bp|location=Sequence derived from alignment at CM002459.1:940730..942045+ (Nannochloropsis gaditana)
ATGGCGGTAACTGCAGTTATGTCGCCTTCTTCACACTTGATCAGACCATT
GAAAGAAAacattccttctcccaagGCCGACGCCGGAGCTGCCCCGGCCC
TTGTCACAATCCACGGCGACGACGGTTGCAGCTTATGCATCGAATGCGGC
AAGCCCGTCACAGAGGGCCTTTACAGGGAATATTCGAAGGATAATATCCG
TCTATCGAGATGTGTAAGTGCATGATCGCATCCTGAAACCCAACCACCCG
CTTTTTGCATGTAGCTAGAGCACGCATACTCTCCAACGCGAAGCCTTACT
CTATCCTTATCAAAACAATTCGCCTACGGGAACTTTACTGTCCTTCCAGG
AATTTTGTGGCGCAGTTGCAGACCGACTGATCGAGTATGAGCTCGTGCTC
GTCGGACTGGATTTAGCCCTCCACAGGTTGCCTGCGTGGCGGCATATTCT
CTTCAATCGACAGCCGCACGCCAAACTAGAATTTGCACAGGTGCGACCTT
GAAGGATTAGATTATTCAGTATCTGACAAGTCAACAGATTGTGAAGAGTG
TAATTATTTAAACTCTCTCACGGCTGCGATGGCCTGTTGATACTTGTCAA
CTTGCCAGAGGTGACTTCTTCTTGTGCAGCGTTGTAAATGTATGAGGGCG
TCCACTGATCCACTGTATAATTCCTTTTGTTCATTGCTTCTTACACAGCT
TTGGCGCATGGCATTGGTTCTGACGCTGGTCGACACACACATCAAATATG
CCATATACGTGCACtactcctccatctctcctccAAATCACCTCGATTTG
ACCGACACGCCTAAATACCAACTTTCTCTGCTTCTCCGCATCCTGCTCCT
TTCATTTGTAGAGCACTTCGTATTTTTCGGGATAATCGTGTTTCTGACAA
CTTGGATGTTGGCTGTCCGTCTTCATCTGTGTCGCCCTCAACTACGAGGT
CCTGCCAGCACTCCATACACCCGCACATTTGTGACACGCAAATTGGTACA
GGCCCTTCTATTTCCGAACTTTGGTCGATGCATCGTCATATTTGTGATGG
TTTGGGACCCTGCTTTTGTGGTGGCGAACCTCATCAGCCTTTTGGTCCTT
TTGTCCCAATGGCAGGCTCTCCGGGCGGTTGTTGCCGCAGCCATAGCCCT
GAATGAAAGATACAATCAGCAGAGGAAAGAAGATAGTGTAAAAAGGGGAA
ATGTAGAGTTTTACGCAGCAGCTCTACCATTTGTGGTCGGCTTGTCTTGT
AAGTGCTTGCTACGTCTTGTCGCGTTCCACGTGGACGCGTCATGCACGAA
TTTGTACCTGGTCTAA
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Coding sequence (CDS) from alignment at CM002459.1:940730..942045+

>rna2676 ID=rna2676|Name=rna2676|organism=Nannochloropsis gaditana|type=CDS|length=2916bp|location=Sequence derived from alignment at CM002459.1:940730..942045+ (Nannochloropsis gaditana)
ATGGCGGTAACTGCAGTTATGTCGCCTTCTTCACACTTGATCAGACCATT
GAAAGAAAacattccttctcccaagGCCGACGCCGGAGCTGCCCCGGCCC
TTGTCACAATCCACGGCGACGACGGTTGCAGCTTATGCATCGAATGCGGC
AAGCCCGTCACAGAGGGCCTTTACAGGGAATATTCGAAGGATAATATCCG
TCTATCGAGATGTGAATTTTGTGGCGCAGTTGCAGACCGACTGATCGAGT
ATGAGCTCGTGCTCGTCGGACTGGATTTAGCCCTCCACAGGTTGCCTGCG
TGGCGGCATATTCTCTTCAATCGACAGCCGCACGCCAAACTAGAATTTGC
ACAGCTTTGGCGCATGGCATTGGTTCTGACGCTGGTCGACACACACATCA
AATATGCCATATACGTGCACtactcctccatctctcctccAAATCACCTC
GATTTGACCGACACGCCTAAATACCAACTTTCTCTGCTTCTCCGCATCCT
GCTCCTTTCATTTGTAGAGCACTTCGTATTTTTCGGGATAATCGTGTTTC
TGACAACTTGGATGTTGGCTGTCCGTCTTCATCTGTGTCGCCCTCAACTA
CGAGGTCCTGCCAGCACTCCATACACCCGCACATTTGTGACACGCAAATT
GGTACAGGCCCTTCTATTTCCGAACTTTGGTCGATGCATCGTCATATTTG
TGATGGTTTGGGACCCTGCTTTTGTGGTGGCGAACCTCATCAGCCTTTTG
GTCCTTTTGTCCCAATGGCAGGCTCTCCGGGCGGTTGTTGCCGCAGCCAT
AGCCCTGAATGAAAGATACAATCAGCAGAGGAAAGAAGATAGTGTAAAAA
GGGGAAATGTAGAGTTTTACGCAGCAGCTCTACCATTTGTGGTCGGCTTG
TCTTGTAAGTGCTTGCTACGTCTTGTCGCGTTCCACGTGGACGCGTCATG
CACGAATTTGTACCTGGTCTAAATGGCGGTAACTGCAGTTATGTCGCCTT
CTTCACACTTGATCAGACCATTGAAAGAAAacattccttctcccaagGCC
GACGCCGGAGCTGCCCCGGCCCTTGTCACAATCCACGGCGACGACGGTTG
CAGCTTATGCATCGAATGCGGCAAGCCCGTCACAGAGGGCCTTTACAGGG
AATATTCGAAGGATAATATCCGTCTATCGAGATGTGAATTTTGTGGCGCA
GTTGCAGACCGACTGATCGAGTATGAGCTCGTGCTCGTCGGACTGGATTT
AGCCCTCCACAGGTTGCCTGCGTGGCGGCATATTCTCTTCAATCGACAGC
CGCACGCCAAACTAGAATTTGCACAGCTTTGGCGCATGGCATTGGTTCTG
ACGCTGGTCGACACACACATCAAATATGCCATATACGTGCACtactcctc
catctctcctccAAATCACCTCGATTTGACCGACACGCCTAAATACCAAC
TTTCTCTGCTTCTCCGCATCCTGCTCCTTTCATTTGTAGAGCACTTCGTA
TTTTTCGGGATAATCGTGTTTCTGACAACTTGGATGTTGGCTGTCCGTCT
TCATCTGTGTCGCCCTCAACTACGAGGTCCTGCCAGCACTCCATACACCC
GCACATTTGTGACACGCAAATTGGTACAGGCCCTTCTATTTCCGAACTTT
GGTCGATGCATCGTCATATTTGTGATGGTTTGGGACCCTGCTTTTGTGGT
GGCGAACCTCATCAGCCTTTTGGTCCTTTTGTCCCAATGGCAGGCTCTCC
GGGCGGTTGTTGCCGCAGCCATAGCCCTGAATGAAAGATACAATCAGCAG
AGGAAAGAAGATAGTGTAAAAAGGGGAAATGTAGAGTTTTACGCAGCAGC
TCTACCATTTGTGGTCGGCTTGTCTTGTAAGTGCTTGCTACGTCTTGTCG
CGTTCCACGTGGACGCGTCATGCACGAATTTGTACCTGGTCTAAATGGCG
GTAACTGCAGTTATGTCGCCTTCTTCACACTTGATCAGACCATTGAAAGA
AAacattccttctcccaagGCCGACGCCGGAGCTGCCCCGGCCCTTGTCA
CAATCCACGGCGACGACGGTTGCAGCTTATGCATCGAATGCGGCAAGCCC
GTCACAGAGGGCCTTTACAGGGAATATTCGAAGGATAATATCCGTCTATC
GAGATGTGAATTTTGTGGCGCAGTTGCAGACCGACTGATCGAGTATGAGC
TCGTGCTCGTCGGACTGGATTTAGCCCTCCACAGGTTGCCTGCGTGGCGG
CATATTCTCTTCAATCGACAGCCGCACGCCAAACTAGAATTTGCACAGCT
TTGGCGCATGGCATTGGTTCTGACGCTGGTCGACACACACATCAAATATG
CCATATACGTGCACtactcctccatctctcctccAAATCACCTCGATTTG
ACCGACACGCCTAAATACCAACTTTCTCTGCTTCTCCGCATCCTGCTCCT
TTCATTTGTAGAGCACTTCGTATTTTTCGGGATAATCGTGTTTCTGACAA
CTTGGATGTTGGCTGTCCGTCTTCATCTGTGTCGCCCTCAACTACGAGGT
CCTGCCAGCACTCCATACACCCGCACATTTGTGACACGCAAATTGGTACA
GGCCCTTCTATTTCCGAACTTTGGTCGATGCATCGTCATATTTGTGATGG
TTTGGGACCCTGCTTTTGTGGTGGCGAACCTCATCAGCCTTTTGGTCCTT
TTGTCCCAATGGCAGGCTCTCCGGGCGGTTGTTGCCGCAGCCATAGCCCT
GAATGAAAGATACAATCAGCAGAGGAAAGAAGATAGTGTAAAAAGGGGAA
ATGTAGAGTTTTACGCAGCAGCTCTACCATTTGTGGTCGGCTTGTCTTGT
AAGTGCTTGCTACGTCTTGTCGCGTTCCACGTGGACGCGTCATGCACGAA
TTTGTACCTGGTCTAA
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Synonyms
Publications