rna2664, rna2664 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2664
Unique Name	rna2664
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3437
Alignment location	CM002459.1:911728..912852 -

Link to JBrowse

Properties


Property Name	Value
Product	ubiquinone biosynthesis protein mitochondrial
Orig transcript id	gnl\|cribi\|Naga_100008g31.7828.mrna
Orig protein id	gnl\|cribi\|Naga_100008g31.7828
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:911728..912852 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g31	gene2547	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27936.1	cds2656	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2664	rna2664-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:911728..912852-
coding sequence from alignment at CM002459.1:911728..912852-

mRNA sequence

>rna2664 ID=rna2664|Name=rna2664|organism=Nannochloropsis gaditana|type=mRNA|length=3437bp
AGGAGTGGAAGCGTTGACGGCCTTGGGTGATTTCGGGGTTTCGAGAATGA
ACTTGGAAGCCTGCTTTTGGCTACGAACAGTAGGATAAACGATGGATGGG
GAAGGAGACTTCACGTTCATGCCTGCCCTCGGGGAGGCAGCATCCTACCC
GTCACCATCACCATCAAGCGAGGCGGGAAATGCTGAAAGCATGGACGTTG
TGGCAGGGACGGAGCAGCCCCTGGGCCTTGGTGAGACTCCTCTTGTGGCG
TCACACCATCATCCTCTCCTTTCGACTCCGAATCCCAACACTCCATGCGG
AGGGATGGACACGGAATGTAGCCTTACTTCATTTCTTTTCCAGGGAGACG
TAATCGATGCTGTCCAATTATCACAAGACGTGGTGGACTCGGATGCCATG
GAAATAACGGAGGCGCGAGAGATATCTTCTAGCGTCGACGCCTTCGATGC
CCCTGCAATACCGTGTGACACACTTACCTCGCTGGAAGATAATGGAAGAG
ACGATGACCCATTTCTCTCTACACTGCAAGACATAACAATGAACGTTGGT
GCCGACAGTGAACATAGTCTTGTCAAAGAGCTGGCAGGGGCAACAAAGGA
AGCATCGGGCATCGACGCGCCCACAGCATTTCCTGACGTTCTCCTTTCGA
CCTTCACTTCGCACACTGACATGGAAAACAGACAAGAAAATGAAGATATT
ATCAAAGCTACAACACCGCAAGAAGAGGCGGGAGGCTCGGGAACACTATC
GGAAACGCCCACAGAGAGTAACGTAGCGGGTAAGGTCGAAGGGGAGATGG
AGCCCTCCAGAGCAGGGGACGCTTTTTCAGTCCTCCCAGCTGCCAGTCCA
GCTGCGTTCACCTGTGTAACACCGTCTCAGAAAATTGAAGCGGGTACCCC
CTCTGGTCCGCTCCCCCAAGGCGAAGTGATGAATCGCATTGCTCAGGGCC
AGGCGGCCCTGGTACAGTCGCAATCGAACCAGCTCCGCGCACTCGTCCTG
TGGATAGCAACAGCGCCTAGGTTGGGTCTATCAGAATCCGAACCAGCATA
TGCCACATTTCTTCACCGCCGTCGACCGCAATCGTCCCGGGGGGCATGTC
ACATCATCGACGAGCTGGAAGCACGCCTGATGCAGTGCTTCGACGCCCGG
GGTCGGATAAGCAGGGAGAGCGCCGGGGACGCGGTCCTGGACCTGATGCT
GCAAGCGACCAGTGACGAGAACAAGGTGCTGCTCATCGAGGTGCTGAAAA
CGTCGACGGACACGGCGGTGCTGGAGCGGCTGGTCCATAACGGGGTTCTG
CGTGTGCTCAAGCACTGGGTCTTGGAGTACAATCAAGCGACCGACGACCA
GGCGGTATTGCGCTTCCTGCTGGAGACTTTGCGAGATCTCCCCGTCACGT
ATGAGAGCTTGCGTGGGAGCGGGCTGGTTGCGCTGATCACCAAGATCAAG
AAAGACAAGCTCGGGGGCGAGTCGCTGGACAAGGGACGGCGGAGCTTGGG
AAGACTGGCCGAGGAGGTGCGGACAGCGTGGAAAAAGCGGGTCAAGGAGG
CGGCGGGAGCCTCGAGCCCGAATGCTCCATTGCCCCCCAGGTTGGTTCCC
AGGCACTCCGTCCCTCCTAATGCGCCCAAGCCTGGAACAGAGTCGACTGG
AGCCACCGTTTCGGACGCCGAGACCCTCAGCCGCCCTTCAATCTCCCTCT
CGAGTGGGGCTTCCTCTAGACCGGTCAACACGGACGAGGGGGCTGGCGCT
GCCACGTCGGAATCTGCTCCGATCAAGCGTCGTGAAAGCGAAAGGAAACG
CCCGATTGTGTCTAGCACCTGTCCAACGGGACGGACAGGGCTCGAGGACG
GACGCGGGCCGTCAGGGCCTGCCCGCCCGAAACCGAAGCTCGGACCCACG
GCTGCTGCCTCCGATACCCTGGCTTCTACACCGTCTTCGCACCGCAGAGC
TGACGGGGCTGGGGGGAATAATGGGGATGCGAAGGGCCATCGGCGTGTGG
TGTGGAGGGACGAGAAGGGGGGAGATCTCATGGACGTCCTGACATTCGAT
GTGGAGGAGGAGGTGGGGGGGGGAGAGGGAGGAGATTGGAGCGAGGGGAC
ACGTCATGACCGGATTCGGGCCCTGGCTATGCGTGAGCGGCAGAAGGAGA
TGGAGCTGTTCAAGAATGTGGGTGGCTGGTCCGCCCTTGGGGAGCAGGTA
AAGGGCAGGAATGGCGCGAAAAGGGGCGCCGGTGCAAAGGATGTCGGCCG
ACAGGCCCTGACGCCCACAACTGCATGGCGTGCCCTTGAAAGGCTGGTTG
TCCCCCATGAAAAGGGGGGGAAAAGGATCGAGGATGGAAAATCCGTCGTT
TTGAGGACGCCAGAGACTGTCCGATTGGATGCGGCGCAGAAATTGCTCTT
GGAAGTCCGATACATCAGAGACGGGGATATCCCGTTCACGCCGTCGGAGG
GACTCACCGTGCACGCTCCTCAGGAAGGCTTTACCATCTCACCTACGATC
GCTTTCAGGTTTTCAACGAGAGAAGGAGACGTCGCTACTAGTAACGCGAG
TCGTGGCAGTGTCGCAACGGGAAATTCCTCGGCTGAAAACGTGCACGTCC
CTCTTATTCCCGACACTATCAAGGGCATCGAGATCCTGAAAAATGTACCC
GGTTGGATCCGCGAACGATTGCTCGCCAATGGGAATGAGGTGCTTCACTT
CTGCCTTGCGTCAACCTCAGGATTCCAAAAAGAAATCGATCAGCAGAAAG
TCTACGATGTGGTCCGCCTCTTACAAGCCGCGGAGACAGTACGGCTCGAG
CCGCATGTACAGACACGTCTTTGCCGGAATCCGTCGAGATTTCTGCCTTG
CGTCAGCTCGGATGGTGGCCTGGATATGGGACTCCTTGCAAGAGCTTTTG
CGGAGGAAGACAGGGAGGAGGAGCAGCAATTTCGCATCCAGCAGCAACAG
CAACAGCGAGACAGAAACATCCCCTTTCATAAGATGGGTGGCAGTGGCGA
GGAGACAGGGCGTGAAACAGGGTCTCACATTCGTCAGTCACCACTCGGTG
AGACTTATTCTCCCCCTCCCCGCACCTCCGCTTATTCAATGCCACATGCT
TCTGGTCTCCGGAGCTCCCCGGGACCAGTACCGCCAGAAGATCCGTTAAG
CGAGCGACACGTACCGAGGTTTTGGAAGCCCTGCAAGTATTTCGCGCCCA
GGAAGGGAGCTGGAAGCTGTCGTTTCGGCAACCGGTGTAGGTATCTCCAC
GAAGGAATCAGCGTGCGACACGGAGAACAACGGTAAGCTCGCGCACGGAT
GAATCTGGAAACTTTATTTATAAATAAAAATCAAATGTGTTGCATGTTCC
TGACGAGGAAAAGATCGCAGGTCATAAAGGCATCCAAAGTCTTCGCTACT
CAACATGTGCCGTCTTCCATTCTTCATGTTGCCCATC

protein sequence of rna2664

>rna2664-protein ID=rna2664-protein|Name=rna2664|organism=Nannochloropsis gaditana|type=polypeptide|length=374bp
MQGARLLPTFARGHRRCATLVRLFSASTQEPQTRALTRRDCRPPVVRAFK
AFSTADHFDRSKTEEESSNAASSASTSTFQDPRQEILAAALPLVPTHGWT
EEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEE
LAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLA
EVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTW
AFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVL
EKVPLTGTVVTVVHAVLANLAAMAPTTPSPFDQEESKKRETETSTEFGPS
TEIDPYAGKIEDNEIANDAKKKSP

mRNA from alignment at CM002459.1:911728..912852-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2664 ID=rna2664|Name=rna2664|organism=Nannochloropsis gaditana|type=mRNA|length=1125bp|location=Sequence derived from alignment at CM002459.1:911728..912852- (Nannochloropsis gaditana)
ATGCAAGGGGCACGATTGTTACCGACGTTTGCCAGGGGGCATCGTCGGTG
TGCGACGCTGGTCCGTCTTTTTTCTGCGTCCACTCAAGAGCCACAGACGA
GAGCTCTGACTCGTCGGGACTGTCGCCCGCCTGTGGTCAGAGCGTTCAAG
GCATTTTCTACCGCCGACCATTTCGATCGCTCAAAAACAGAAGAAGAAAG
CTCAAATGCAGCCTCTTCAGCGTCCACATCCACATTTCAAGACCCACGTC
AGGAGATCTTGGCCGCTGCCCTGCCTCTGGTGCCGACGCACGGGTGGACT
GAAGAGGCCTTGGCTGCGGGTGCGGCCTCCTTAGGCTTCCCTGCAGTGGC
GCATGGCATGTTTGCGCGTGGGGGGATCGAGCTAGTGGAACATGTGCTAG
CCCAAATTGATTCCGCATGGCTAGCAGAGCTTGAAGCCCGCAAGGAGGAA
CTTGCCGCCTTCCCCTCGTCACGAGAGCGCTTGGAAAAGGCGATACAATG
CCGCTTACGCTTGATCGCACCACACCTCGCCCAATGGCCGCAAGCGATGG
CGCTAAGTTTGTCACCGCAGCATCTGGAGACGACCGCACGGGGCCTGGCG
GAAGTAGCGGATGAGTTGTGCGTGATATCAGGCGAGGACTCTGTCAATGT
TCCAAATTGGTACGCTCATCGTGCCACTGTCTGCTCGGTGTACATCGCCA
CCGAGCTATTTTTCCTAACAGACTACTCTGACGATTATAGAGACACATGG
GCTTTTTTGAATCGACGCCTCCAGGACGTCGAGGCCCTCTCCCACGCGCC
GCGGAACGTGCAGGAAGGTGTGTTGGCATTTCAAACCGCTGCCTCAGCCA
TGGCGTCGGCGCTTTCCTCGCTGACACAGCCAGCCGTGGTGGGAGTACTT
GAGAAAGTACCTCTAACGGGCACGGTAGTCACGGTGGTGCATGCAGTACT
TGCCAATTTGGCGGCGATGGCACCGACCACCCCTTCCCCCTTTGATCAGG
AGGAGAGTAAAAAGAGAGAGACAGAAACGTCGACGGAATTCGGTCCTTCC
ACAGAGATAGATCCGTACGCGGGAAAAATAGAGGACAATGAAATCGCGAA
TGATGCGAAGAAAAAGTCTCCGTAA

Coding sequence (CDS) from alignment at CM002459.1:911728..912852-

>rna2664 ID=rna2664|Name=rna2664|organism=Nannochloropsis gaditana|type=CDS|length=1125bp|location=Sequence derived from alignment at CM002459.1:911728..912852- (Nannochloropsis gaditana)
ATGCAAGGGGCACGATTGTTACCGACGTTTGCCAGGGGGCATCGTCGGTG
TGCGACGCTGGTCCGTCTTTTTTCTGCGTCCACTCAAGAGCCACAGACGA
GAGCTCTGACTCGTCGGGACTGTCGCCCGCCTGTGGTCAGAGCGTTCAAG
GCATTTTCTACCGCCGACCATTTCGATCGCTCAAAAACAGAAGAAGAAAG
CTCAAATGCAGCCTCTTCAGCGTCCACATCCACATTTCAAGACCCACGTC
AGGAGATCTTGGCCGCTGCCCTGCCTCTGGTGCCGACGCACGGGTGGACT
GAAGAGGCCTTGGCTGCGGGTGCGGCCTCCTTAGGCTTCCCTGCAGTGGC
GCATGGCATGTTTGCGCGTGGGGGGATCGAGCTAGTGGAACATGTGCTAG
CCCAAATTGATTCCGCATGGCTAGCAGAGCTTGAAGCCCGCAAGGAGGAA
CTTGCCGCCTTCCCCTCGTCACGAGAGCGCTTGGAAAAGGCGATACAATG
CCGCTTACGCTTGATCGCACCACACCTCGCCCAATGGCCGCAAGCGATGG
CGCTAAGTTTGTCACCGCAGCATCTGGAGACGACCGCACGGGGCCTGGCG
GAAGTAGCGGATGAGTTGTGCGTGATATCAGGCGAGGACTCTGTCAATGT
TCCAAATTGGTACGCTCATCGTGCCACTGTCTGCTCGGTGTACATCGCCA
CCGAGCTATTTTTCCTAACAGACTACTCTGACGATTATAGAGACACATGG
GCTTTTTTGAATCGACGCCTCCAGGACGTCGAGGCCCTCTCCCACGCGCC
GCGGAACGTGCAGGAAGGTGTGTTGGCATTTCAAACCGCTGCCTCAGCCA
TGGCGTCGGCGCTTTCCTCGCTGACACAGCCAGCCGTGGTGGGAGTACTT
GAGAAAGTACCTCTAACGGGCACGGTAGTCACGGTGGTGCATGCAGTACT
TGCCAATTTGGCGGCGATGGCACCGACCACCCCTTCCCCCTTTGATCAGG
AGGAGAGTAAAAAGAGAGAGACAGAAACGTCGACGGAATTCGGTCCTTCC
ACAGAGATAGATCCGTACGCGGGAAAAATAGAGGACAATGAAATCGCGAA
TGATGCGAAGAAAAAGTCTCCGTAA

Synonyms

Publications