EWM27936.1, cds2656 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|585110277|gb|EWM27936.1| (ubiquinone biosynthesis protein mitochondrial [Nannochloropsis gaditana]) HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0 Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0 Query: 1 MQGARLLPTFARGHRRCATLVRLFSASTQEPQTRALTRRDCRPPVVRAFKAFSTADHFDRSKTEEESSNAASSASTSTFQDPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLTGTVVTVVHAVLANLAAMAPTTPSPFDQEESKKRETETSTEFGPSTEIDPYAGKIEDNEIANDAKKKSP 374 MQGARLLPTFARGHRRCATLVRLFSASTQEPQTRALTRRDCRPPVVRAFKAFSTADHFDRSKTEEESSNAASSASTSTFQDPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLTGTVVTVVHAVLANLAAMAPTTPSPFDQEESKKRETETSTEFGPSTEIDPYAGKIEDNEIANDAKKKSP Sbjct: 1 MQGARLLPTFARGHRRCATLVRLFSASTQEPQTRALTRRDCRPPVVRAFKAFSTADHFDRSKTEEESSNAASSASTSTFQDPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLTGTVVTVVHAVLANLAAMAPTTPSPFDQEESKKRETETSTEFGPSTEIDPYAGKIEDNEIANDAKKKSP 374
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|675185015|ref|XP_008901392.1| (rpsU-divergently transcribed protein [Phytophthora parasitica INRA-310] >gi|567967433|gb|ETK92609.1| rpsU-divergently transcribed protein [Phytophthora parasitica] >gi|567995891|gb|ETL46018.1| rpsU-divergently transcribed protein [Phytophthora parasitica] >gi|568098622|gb|ETN13349.1| rpsU-divergently transcribed protein [Phytophthora parasitica INRA-310] >gi|570333459|gb|ETO81407.1| rpsU-divergently transcribed protein [Phytophthora parasitica P1976] >gi|570957589|gb|ETP22568.1| rpsU-divergently transcribed protein [Phytophthora parasitica CJ01A1]) HSP 1 Score: 175.637 bits (444), Expect = 4.925e-48 Identity = 91/226 (40.27%), Postives = 137/226 (60.62%), Query Frame = 0 Query: 81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLT 306 DP Q ILA A+ V HGWT EALAAGA LG+P+VAHGMF+RG +ELVE+ + + L E+L A + ERL+ ++ RL ++ P LA WPQ MA+ PQ+ +TA+ LA ++DE+ +G+ S ++ +WY RA + +Y +TELF L D S +++DTWAFL+RR+ + L P+N+ + ++ SA++SL P ++ PL+ Sbjct: 69 DPEQLILAKAMGHVVAHGWTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQAM-TVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFAGDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLS 292
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|570993134|gb|ETP50534.1| (rpsU-divergently transcribed protein [Phytophthora parasitica P10297]) HSP 1 Score: 175.637 bits (444), Expect = 5.084e-48 Identity = 91/226 (40.27%), Postives = 137/226 (60.62%), Query Frame = 0 Query: 81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLT 306 DP Q ILA A+ V HGWT EALAAGA LG+P+VAHGMF+RG +ELVE+ + + L E+L A + ERL+ ++ RL ++ P LA WPQ MA+ PQ+ +TA+ LA ++DE+ +G+ S ++ +WY RA + +Y +TELF L D S +++DTWAFL+RR+ + L P+N+ + ++ SA++SL P ++ PL+ Sbjct: 69 DPEQLILAKAMGHVVAHGWTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQAM-TVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFAGDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLS 292
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|566029818|gb|ETI52729.1| (rpsU-divergently transcribed protein [Phytophthora parasitica P1569] >gi|568025152|gb|ETL99172.1| rpsU-divergently transcribed protein [Phytophthora parasitica] >gi|568055581|gb|ETM52325.1| rpsU-divergently transcribed protein [Phytophthora parasitica]) HSP 1 Score: 175.637 bits (444), Expect = 5.958e-48 Identity = 91/226 (40.27%), Postives = 137/226 (60.62%), Query Frame = 0 Query: 81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLT 306 DP Q ILA A+ V HGWT EALAAGA LG+P+VAHGMF+RG +ELVE+ + + L E+L A + ERL+ ++ RL ++ P LA WPQ MA+ PQ+ +TA+ LA ++DE+ +G+ S ++ +WY RA + +Y +TELF L D S +++DTWAFL+RR+ + L P+N+ + ++ SA++SL P ++ PL+ Sbjct: 69 DPEQLILAKAMGHVVAHGWTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQAM-TVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFAGDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLS 292
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|970632257|gb|KUF78593.1| (Ubiquinone biosynthesis protein COQ9 [Phytophthora nicotianae]) HSP 1 Score: 174.866 bits (442), Expect = 8.042e-48 Identity = 91/226 (40.27%), Postives = 137/226 (60.62%), Query Frame = 0 Query: 81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLT 306 DP Q ILA A+ V HGWT EALAAGA LG+P+VAHGMF+RG +ELVE+ + + L E+L A + ERL+ ++ RL ++ P LA WPQ MA+ PQ+ +TA+ LA ++DE+ +G+ S ++ +WY RA + +Y +TELF L D S +++DTWAFL+RR+ + L P+N+ + ++ SA++SL P ++ PL+ Sbjct: 64 DPEQLILAKAMGHVVAHGWTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQAX-TVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFAGDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLS 287
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|698786240|ref|XP_009826152.1| (rpsU-divergently transcribed protein [Aphanomyces astaci] >gi|574118980|gb|ETV84460.1| rpsU-divergently transcribed protein [Aphanomyces astaci]) HSP 1 Score: 171.4 bits (433), Expect = 7.132e-47 Identity = 89/218 (40.83%), Postives = 134/218 (61.47%), Query Frame = 0 Query: 80 QDPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQE-------GVLAFQTAASAMASALSS 290 QDP IL+ A+ V T GW+ ++L +GA G+P+VAHGMF RG IELVE+ + + +L A +L +RL++ I+ RL L+AP+++ WPQAMAL PQ+ TT + LAE+ D++ V +G+ S +V +WY RA + VY ATELF LTD S ++ DTW FL+RR+++ AL P N + G+ + + A+A+A L++ Sbjct: 32 QDPSHIILSHAIDHVKTKGWSVDSLGSGARDAGYPSVAHGMFPRGPIELVEYFMDDLQHKVQDKLAAETIDLPV----TDRLKRGIRFRLELLAPYISVWPQAMALGALPQNAPTTVKKLAEMVDDIWVYAGDRSTDV-SWYTKRAVLTGVYTATELFMLTDQSPNHEDTWRFLDRRIEEAIALGDIPNNAHDVAGMLSIGIQSLLSTAAALAGPLTT 244
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|301122843|ref|XP_002909148.1| (ubiquinone biosynthesis protein COQ9 [Phytophthora infestans T30-4] >gi|262099910|gb|EEY57962.1| ubiquinone biosynthesis protein COQ9 [Phytophthora infestans T30-4]) HSP 1 Score: 172.555 bits (436), Expect = 7.234e-47 Identity = 90/226 (39.82%), Postives = 136/226 (60.18%), Query Frame = 0 Query: 81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLT 306 DP Q ILA AL V +HGW EALAAGA LG+P+VAHGMF RG I+LV++ + + L E+L A + ERL+ + RL+++ P LA WPQAMA+ PQ+ TA+ LA+++DE+ +G+ S ++ +WY RA + +Y +TELF L D S +++DTW FL+RR+ + L P+N+ + ++ SA++SL P ++ PL+ Sbjct: 66 DPEQLILAKALDHVISHGWAIEALAAGATDLGYPSVAHGMFQRGAIDLVDYFMDSCLAKLRETLIVNTEKLQAM-TVTERLKFGVCTRLQMLEPVLATWPQAMAIGALPQNAPGTAKRLAQLSDEIWYFAGDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWDFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLASQIISNSPLS 289
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|953495274|emb|CEG43181.1| (rpsu-divergently transcribed protein [Plasmopara halstedii]) HSP 1 Score: 170.629 bits (431), Expect = 1.474e-46 Identity = 86/214 (40.19%), Postives = 133/214 (62.15%), Query Frame = 0 Query: 81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQP 294 D Q ILA + VP HGWT EALAAGA LG+P+VAHGMF+RG IELV++ + + L E+L A + ERL+ ++ RL ++ P LA WPQ MA+ PQ+ TA+ LA+++DE+ +G+ S ++ +WY RA + ++Y +TELF L D S + ++TW FL+RR+ + +L P+N+ + ++ ++ SA++SL P Sbjct: 70 DLEQRILAKTMDNVPVHGWTVEALAAGAIDLGYPSVAHGMFSRGAIELVDYFMDTCLNKLRETLINNTEKLQAMTVA-ERLKFGVRTRLEMLEPVLATWPQGMAIGAFPQNAPGTAKRLAKLSDEIWYFAGDKSTDL-SWYTKRAILSAIYASTELFMLNDKSPNRQETWEFLDRRVDETISLGELPQNLNDALIMANIGLQSVFSAVTSLAGP 281
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|1173932223|gb|OQR84315.1| (ubiquinone biosynthesis protein COQ9 [Achlya hypogyna]) HSP 1 Score: 168.703 bits (426), Expect = 4.436e-46 Identity = 95/222 (42.79%), Postives = 137/222 (61.71%), Query Frame = 0 Query: 81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVL----AQIDSAWLAE-LEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRN-------VQEGVLAFQTAASAMASALSS 290 DP Q IL A+ V T GWT EAL GA GFP++AHGMF RG IELV+ + A++ +A AE ++A E +A +RL++ +Q RL+L+AP+L WPQAMAL PQ+ TT + LA+ AD++ +G+ S ++ +WY RA + +Y ATELF LTD S +Y +TW FL+RR+++ AL P+N V G+ + + +A+A LSS Sbjct: 32 DPSQTILTNAMKHVQTSGWTIEALGQGARDAGFPSIAHGMFPRGPIELVDFFMDDWQAKMQAALAAEPIDATSEYVAT-----DRLKRGVQIRLQLLAPYLHVWPQAMALGALPQNAPTTMKKLAQAADDIWFFAGDRSTDL-SWYTKRALLTGIYAATELFMLTDASPNYEETWKFLDRRVEEAIALGDLPQNAGDIAGMVSIGLQSLLSTTAALAGPLSS 247
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|673033926|ref|XP_008870924.1| (rpsU-divergently transcribed protein [Aphanomyces invadans] >gi|574473786|gb|ETW00789.1| rpsU-divergently transcribed protein [Aphanomyces invadans]) HSP 1 Score: 167.933 bits (424), Expect = 1.866e-45 Identity = 87/212 (41.04%), Postives = 135/212 (63.68%), Query Frame = 0 Query: 81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQE-------GVLAFQTAASAMA 285 DP Q IL+ AL V T GW+ E+L +GA G+P+VAHGMF RG IELVE+ + + +L A + + P + +RL++ I+ RL L+AP+++ WPQAMAL PQ+ TT + LAE+ D++ V +G+ + ++ +WY RA + VY ATELF L+D+S ++ +TW FL+RR+++ AL P N Q+ G+ + + A+A+A Sbjct: 35 DPSQLILSCALNHVKTQGWSIESLGSGARDAGYPSVAHGMFPRGPIELVEYFMDDLQHTVQDKLAA-ESTVVDIPVT-DRLKRGIRVRLELLAPYISVWPQAMALGALPQNAPTTMKKLAEMIDDIWVFAGDRTTDM-SWYTKRAVLTGVYTATELFMLSDHSPNHEETWKFLDRRIEEAIALGDIPNNAQDVAGMVSIGIQSLLSTAAALA 243 The following BLAST results are available for this feature:
BLAST of EWM27936.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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