EWM27936.1, cds2656 (CDS) Nannochloropsis gaditana

Overview
NameEWM27936.1
Unique Namecds2656
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:911728..912852 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27936.1
Productubiquinone biosynthesis protein mitochondrial
Orig transcript idgnl|cribi|Naga_100008g31.7828.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:911728..912852 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006744ubiquinone biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR013718COQ9
IPR012762Ubiq_biosynth_COQ9
Homology
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|585110277|gb|EWM27936.1| (ubiquinone biosynthesis protein mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0
Query:    1 MQGARLLPTFARGHRRCATLVRLFSASTQEPQTRALTRRDCRPPVVRAFKAFSTADHFDRSKTEEESSNAASSASTSTFQDPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLTGTVVTVVHAVLANLAAMAPTTPSPFDQEESKKRETETSTEFGPSTEIDPYAGKIEDNEIANDAKKKSP 374
            MQGARLLPTFARGHRRCATLVRLFSASTQEPQTRALTRRDCRPPVVRAFKAFSTADHFDRSKTEEESSNAASSASTSTFQDPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLTGTVVTVVHAVLANLAAMAPTTPSPFDQEESKKRETETSTEFGPSTEIDPYAGKIEDNEIANDAKKKSP
Sbjct:    1 MQGARLLPTFARGHRRCATLVRLFSASTQEPQTRALTRRDCRPPVVRAFKAFSTADHFDRSKTEEESSNAASSASTSTFQDPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLTGTVVTVVHAVLANLAAMAPTTPSPFDQEESKKRETETSTEFGPSTEIDPYAGKIEDNEIANDAKKKSP 374          
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|675185015|ref|XP_008901392.1| (rpsU-divergently transcribed protein [Phytophthora parasitica INRA-310] >gi|567967433|gb|ETK92609.1| rpsU-divergently transcribed protein [Phytophthora parasitica] >gi|567995891|gb|ETL46018.1| rpsU-divergently transcribed protein [Phytophthora parasitica] >gi|568098622|gb|ETN13349.1| rpsU-divergently transcribed protein [Phytophthora parasitica INRA-310] >gi|570333459|gb|ETO81407.1| rpsU-divergently transcribed protein [Phytophthora parasitica P1976] >gi|570957589|gb|ETP22568.1| rpsU-divergently transcribed protein [Phytophthora parasitica CJ01A1])

HSP 1 Score: 175.637 bits (444), Expect = 4.925e-48
Identity = 91/226 (40.27%), Postives = 137/226 (60.62%), Query Frame = 0
Query:   81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLT 306
            DP Q ILA A+  V  HGWT EALAAGA  LG+P+VAHGMF+RG +ELVE+ +    +     L    E+L A  +  ERL+  ++ RL ++ P LA WPQ MA+   PQ+  +TA+ LA ++DE+   +G+ S ++ +WY  RA +  +Y +TELF L D S +++DTWAFL+RR+ +   L   P+N+ +          ++ SA++SL  P    ++   PL+
Sbjct:   69 DPEQLILAKAMGHVVAHGWTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQAM-TVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFAGDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLS 292          
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|570993134|gb|ETP50534.1| (rpsU-divergently transcribed protein [Phytophthora parasitica P10297])

HSP 1 Score: 175.637 bits (444), Expect = 5.084e-48
Identity = 91/226 (40.27%), Postives = 137/226 (60.62%), Query Frame = 0
Query:   81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLT 306
            DP Q ILA A+  V  HGWT EALAAGA  LG+P+VAHGMF+RG +ELVE+ +    +     L    E+L A  +  ERL+  ++ RL ++ P LA WPQ MA+   PQ+  +TA+ LA ++DE+   +G+ S ++ +WY  RA +  +Y +TELF L D S +++DTWAFL+RR+ +   L   P+N+ +          ++ SA++SL  P    ++   PL+
Sbjct:   69 DPEQLILAKAMGHVVAHGWTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQAM-TVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFAGDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLS 292          
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|566029818|gb|ETI52729.1| (rpsU-divergently transcribed protein [Phytophthora parasitica P1569] >gi|568025152|gb|ETL99172.1| rpsU-divergently transcribed protein [Phytophthora parasitica] >gi|568055581|gb|ETM52325.1| rpsU-divergently transcribed protein [Phytophthora parasitica])

HSP 1 Score: 175.637 bits (444), Expect = 5.958e-48
Identity = 91/226 (40.27%), Postives = 137/226 (60.62%), Query Frame = 0
Query:   81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLT 306
            DP Q ILA A+  V  HGWT EALAAGA  LG+P+VAHGMF+RG +ELVE+ +    +     L    E+L A  +  ERL+  ++ RL ++ P LA WPQ MA+   PQ+  +TA+ LA ++DE+   +G+ S ++ +WY  RA +  +Y +TELF L D S +++DTWAFL+RR+ +   L   P+N+ +          ++ SA++SL  P    ++   PL+
Sbjct:   69 DPEQLILAKAMGHVVAHGWTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQAM-TVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFAGDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLS 292          
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|970632257|gb|KUF78593.1| (Ubiquinone biosynthesis protein COQ9 [Phytophthora nicotianae])

HSP 1 Score: 174.866 bits (442), Expect = 8.042e-48
Identity = 91/226 (40.27%), Postives = 137/226 (60.62%), Query Frame = 0
Query:   81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLT 306
            DP Q ILA A+  V  HGWT EALAAGA  LG+P+VAHGMF+RG +ELVE+ +    +     L    E+L A  +  ERL+  ++ RL ++ P LA WPQ MA+   PQ+  +TA+ LA ++DE+   +G+ S ++ +WY  RA +  +Y +TELF L D S +++DTWAFL+RR+ +   L   P+N+ +          ++ SA++SL  P    ++   PL+
Sbjct:   64 DPEQLILAKAMGHVVAHGWTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQAX-TVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFAGDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLS 287          
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|698786240|ref|XP_009826152.1| (rpsU-divergently transcribed protein [Aphanomyces astaci] >gi|574118980|gb|ETV84460.1| rpsU-divergently transcribed protein [Aphanomyces astaci])

HSP 1 Score: 171.4 bits (433), Expect = 7.132e-47
Identity = 89/218 (40.83%), Postives = 134/218 (61.47%), Query Frame = 0
Query:   80 QDPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQE-------GVLAFQTAASAMASALSS 290
            QDP   IL+ A+  V T GW+ ++L +GA   G+P+VAHGMF RG IELVE+ +  +      +L A   +L       +RL++ I+ RL L+AP+++ WPQAMAL   PQ+  TT + LAE+ D++ V +G+ S +V +WY  RA +  VY ATELF LTD S ++ DTW FL+RR+++  AL   P N  +       G+ +  + A+A+A  L++
Sbjct:   32 QDPSHIILSHAIDHVKTKGWSVDSLGSGARDAGYPSVAHGMFPRGPIELVEYFMDDLQHKVQDKLAAETIDLPV----TDRLKRGIRFRLELLAPYISVWPQAMALGALPQNAPTTVKKLAEMVDDIWVYAGDRSTDV-SWYTKRAVLTGVYTATELFMLTDQSPNHEDTWRFLDRRIEEAIALGDIPNNAHDVAGMLSIGIQSLLSTAAALAGPLTT 244          
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|301122843|ref|XP_002909148.1| (ubiquinone biosynthesis protein COQ9 [Phytophthora infestans T30-4] >gi|262099910|gb|EEY57962.1| ubiquinone biosynthesis protein COQ9 [Phytophthora infestans T30-4])

HSP 1 Score: 172.555 bits (436), Expect = 7.234e-47
Identity = 90/226 (39.82%), Postives = 136/226 (60.18%), Query Frame = 0
Query:   81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLT 306
            DP Q ILA AL  V +HGW  EALAAGA  LG+P+VAHGMF RG I+LV++ +    +     L    E+L A  +  ERL+  +  RL+++ P LA WPQAMA+   PQ+   TA+ LA+++DE+   +G+ S ++ +WY  RA +  +Y +TELF L D S +++DTW FL+RR+ +   L   P+N+ +          ++ SA++SL  P    ++   PL+
Sbjct:   66 DPEQLILAKALDHVISHGWAIEALAAGATDLGYPSVAHGMFQRGAIDLVDYFMDSCLAKLRETLIVNTEKLQAM-TVTERLKFGVCTRLQMLEPVLATWPQAMAIGALPQNAPGTAKRLAQLSDEIWYFAGDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWDFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLASQIISNSPLS 289          
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|953495274|emb|CEG43181.1| (rpsu-divergently transcribed protein [Plasmopara halstedii])

HSP 1 Score: 170.629 bits (431), Expect = 1.474e-46
Identity = 86/214 (40.19%), Postives = 133/214 (62.15%), Query Frame = 0
Query:   81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQP 294
            D  Q ILA  +  VP HGWT EALAAGA  LG+P+VAHGMF+RG IELV++ +    +     L    E+L A   + ERL+  ++ RL ++ P LA WPQ MA+   PQ+   TA+ LA+++DE+   +G+ S ++ +WY  RA + ++Y +TELF L D S + ++TW FL+RR+ +  +L   P+N+ + ++       ++ SA++SL  P
Sbjct:   70 DLEQRILAKTMDNVPVHGWTVEALAAGAIDLGYPSVAHGMFSRGAIELVDYFMDTCLNKLRETLINNTEKLQAMTVA-ERLKFGVRTRLEMLEPVLATWPQGMAIGAFPQNAPGTAKRLAKLSDEIWYFAGDKSTDL-SWYTKRAILSAIYASTELFMLNDKSPNRQETWEFLDRRVDETISLGELPQNLNDALIMANIGLQSVFSAVTSLAGP 281          
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|1173932223|gb|OQR84315.1| (ubiquinone biosynthesis protein COQ9 [Achlya hypogyna])

HSP 1 Score: 168.703 bits (426), Expect = 4.436e-46
Identity = 95/222 (42.79%), Postives = 137/222 (61.71%), Query Frame = 0
Query:   81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVL----AQIDSAWLAE-LEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRN-------VQEGVLAFQTAASAMASALSS 290
            DP Q IL  A+  V T GWT EAL  GA   GFP++AHGMF RG IELV+  +    A++ +A  AE ++A  E +A      +RL++ +Q RL+L+AP+L  WPQAMAL   PQ+  TT + LA+ AD++   +G+ S ++ +WY  RA +  +Y ATELF LTD S +Y +TW FL+RR+++  AL   P+N       V  G+ +  +  +A+A  LSS
Sbjct:   32 DPSQTILTNAMKHVQTSGWTIEALGQGARDAGFPSIAHGMFPRGPIELVDFFMDDWQAKMQAALAAEPIDATSEYVAT-----DRLKRGVQIRLQLLAPYLHVWPQAMALGALPQNAPTTMKKLAQAADDIWFFAGDRSTDL-SWYTKRALLTGIYAATELFMLTDASPNYEETWKFLDRRVEEAIALGDLPQNAGDIAGMVSIGLQSLLSTTAALAGPLSS 247          
BLAST of EWM27936.1 vs. NCBI_GenBank
Match: gi|673033926|ref|XP_008870924.1| (rpsU-divergently transcribed protein [Aphanomyces invadans] >gi|574473786|gb|ETW00789.1| rpsU-divergently transcribed protein [Aphanomyces invadans])

HSP 1 Score: 167.933 bits (424), Expect = 1.866e-45
Identity = 87/212 (41.04%), Postives = 135/212 (63.68%), Query Frame = 0
Query:   81 DPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGEDSVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQE-------GVLAFQTAASAMA 285
            DP Q IL+ AL  V T GW+ E+L +GA   G+P+VAHGMF RG IELVE+ +  +      +L A +  +   P + +RL++ I+ RL L+AP+++ WPQAMAL   PQ+  TT + LAE+ D++ V +G+ + ++ +WY  RA +  VY ATELF L+D+S ++ +TW FL+RR+++  AL   P N Q+       G+ +  + A+A+A
Sbjct:   35 DPSQLILSCALNHVKTQGWSIESLGSGARDAGYPSVAHGMFPRGPIELVEYFMDDLQHTVQDKLAA-ESTVVDIPVT-DRLKRGIRVRLELLAPYISVWPQAMALGALPQNAPTTMKKLAEMIDDIWVFAGDRTTDM-SWYTKRAVLTGVYTATELFMLSDHSPNHEETWKFLDRRIEEAIALGDIPNNAQDVAGMVSIGIQSLLSTAAALA 243          
The following BLAST results are available for this feature:
BLAST of EWM27936.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110277|gb|EWM27936.1|0.000e+0100.00ubiquinone biosynthesis protein mitochondrial [Nan... [more]
gi|675185015|ref|XP_008901392.1|4.925e-4840.27rpsU-divergently transcribed protein [Phytophthora... [more]
gi|570993134|gb|ETP50534.1|5.084e-4840.27rpsU-divergently transcribed protein [Phytophthora... [more]
gi|566029818|gb|ETI52729.1|5.958e-4840.27rpsU-divergently transcribed protein [Phytophthora... [more]
gi|970632257|gb|KUF78593.1|8.042e-4840.27Ubiquinone biosynthesis protein COQ9 [Phytophthora... [more]
gi|698786240|ref|XP_009826152.1|7.132e-4740.83rpsU-divergently transcribed protein [Aphanomyces ... [more]
gi|301122843|ref|XP_002909148.1|7.234e-4739.82ubiquinone biosynthesis protein COQ9 [Phytophthora... [more]
gi|953495274|emb|CEG43181.1|1.474e-4640.19rpsu-divergently transcribed protein [Plasmopara h... [more]
gi|1173932223|gb|OQR84315.1|4.436e-4642.79ubiquinone biosynthesis protein COQ9 [Achlya hypog... [more]
gi|673033926|ref|XP_008870924.1|1.866e-4541.04rpsU-divergently transcribed protein [Aphanomyces ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2664rna2664Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications