rna2658, rna2658 (mRNA) Nannochloropsis gaditana

Overview
Namerna2658
Unique Namerna2658
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length555
Alignment locationCM002459.1:899361..900392 +

Link to JBrowse

Properties
Property NameValue
Productmalate cytoplasmic isoform 2
Orig transcript idgnl|cribi|Naga_100008g23.7874.mrna
Orig protein idgnl|cribi|Naga_100008g23.7874
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:899361..900392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g23gene2542Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2658rna2658-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27982.1cds2650Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2658 ID=rna2658|Name=rna2658|organism=Nannochloropsis gaditana|type=mRNA|length=555bp
ATGGGCTTCGGAAAAGTAGACGTACGTGACCGGGTCCAGCGCGCGGGCCT
CCGTCACGTCGCCGTGGTGGAAGAAGATCAAGACCTCAATGCACGGCTCG
AGCGAGGGACACACCCCCTCCCCGCACCGCCCGCCCGGAGGCCTGCGGAC
GTGCTCTTCACACCGGGCCTAGACTTGATCGGCCAGAGCTCGATGAAGAG
CGTGCTGGCGCAGGTCAACGACGCTAGGAGGCCCTTCCTCACCCGCCCCG
CCACATGCCGCATGCACAACAAGCTGGCGGCCGTGGCGTGGTCAGTGTCG
ACCCCTCAGAGGAGGAGGAAAAAAAAGGACGAGGACGGGAGCGAGATCGG
CGGGGAGGAGGACGACGAGGGGATGGAAGAGGAAGAGGACGACGCTGAGG
GGATGGAGGAGGAGGAGGACAGAGAGGAGGTCCTGGGCCTCTGCGAGCAT
CCCCCCAGGAGGGGCGGGGCGCCCATTTGCATCATCTGGGGCTCTGGCGC
CCGGGGCGGTCTCACGCTTAACAACGTGCTCTATCCTACGGGACTGTACA
AGTAG
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protein sequence of rna2658

>rna2658-protein ID=rna2658-protein|Name=rna2658|organism=Nannochloropsis gaditana|type=polypeptide|length=343bp
MKNPQAEEKRVLVYEHVGNPTNTDEISLNGLTIYLASTFSFVLAQLQGVG
TRAEPNNLTKYRTDVRRMIGREEHAPTCVKRVLITGGAGQIAYALLPHLI
SGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLR
VAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVK
VLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLK
IPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLGGRWVPVLDIIGD
EEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD
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mRNA from alignment at CM002459.1:899361..900392+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2658 ID=rna2658|Name=rna2658|organism=Nannochloropsis gaditana|type=mRNA|length=1032bp|location=Sequence derived from alignment at CM002459.1:899361..900392+ (Nannochloropsis gaditana)
atgAAGAATCCGCAAGCAGAGGAGAAACGCGTCCTAGTCTATGAACATGT
TGGAAATCCCACAAATACGGATGAAATATCATTAAATGGACTAACAATTT
ATCTTGCTTCCACATTTTCGTTTGTCTTGGCGCAGTTACAAGGTGTAGGA
ACCCGAGCCGAGCCCAACAATTTGACAAAATACCGAACAGACGTGCGAAG
AATGATCGGGCGCGAGGAGCATGCTCCGACTTGTGTCAAGCGGGTTTTGA
TAACCGGCGGTGCGGGACAGATTGCATATGCTCTATTGCCTCACTTGATC
AGTGGACGAGTCTTTGGCCCCCAAGTCCGCTTAATGGTGCACTTACTCGA
CATAGACGGTACTGAGAATGCATTGCGTGGTGTGCAAATGGAGATAGAAG
ATGCTGCCTCGCcagtggtggtgggcgtAGTGACCACCACGGATTTGCGC
GTGGCATTTACCGACGTGGACTATGCGATTTTGTTGGGGGGCTTCCCTCG
CTTGCCCGGCATGGAGCGAAAGGAGCTTCTTGCTAAAAATGTGGAGATCA
TCACCATGCACGCCGCGGCGCTGGATGAATACGCCAGCCGAGCCGTGAAG
GTGCTAGTGGTGGCTAATCCTGCCAACACACTGGCGCTCATTGCGAAAAA
ACGCGCGGCCAGCCTGCCGGCGGAAAACTTCTCGTGCTTAACGCGATTGG
ACCATGACCGTCTCCGAGGCATGATCGCCAAAAAAATTGACTCCCTTAAG
ATTCCCGATGCGCATGGAGCTGTGACTGCCATGCAGGTGCGGAACGTGAT
CATATGGGGCAACCACTCGAGCACCCAGGTCCCCTCTGCGGCGAAAGCTC
AGGTCCGGCTAGGGGGCAGATGGGTGCCCGTCTTGGACATCAttggagac
gaggaggcagttTGGCTGCACGACGAATTGGTGACGCAAGTGCAACAACG
GGGCGCAGAAATCTTGGCGGCCCGAAAGTTGAGCTCGGCGTTGAGCGCGG
CCCAGGCGATTGCGAATCATTTTAAGGACTAG
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Coding sequence (CDS) from alignment at CM002459.1:899361..900392+

>rna2658 ID=rna2658|Name=rna2658|organism=Nannochloropsis gaditana|type=CDS|length=1032bp|location=Sequence derived from alignment at CM002459.1:899361..900392+ (Nannochloropsis gaditana)
atgAAGAATCCGCAAGCAGAGGAGAAACGCGTCCTAGTCTATGAACATGT
TGGAAATCCCACAAATACGGATGAAATATCATTAAATGGACTAACAATTT
ATCTTGCTTCCACATTTTCGTTTGTCTTGGCGCAGTTACAAGGTGTAGGA
ACCCGAGCCGAGCCCAACAATTTGACAAAATACCGAACAGACGTGCGAAG
AATGATCGGGCGCGAGGAGCATGCTCCGACTTGTGTCAAGCGGGTTTTGA
TAACCGGCGGTGCGGGACAGATTGCATATGCTCTATTGCCTCACTTGATC
AGTGGACGAGTCTTTGGCCCCCAAGTCCGCTTAATGGTGCACTTACTCGA
CATAGACGGTACTGAGAATGCATTGCGTGGTGTGCAAATGGAGATAGAAG
ATGCTGCCTCGCcagtggtggtgggcgtAGTGACCACCACGGATTTGCGC
GTGGCATTTACCGACGTGGACTATGCGATTTTGTTGGGGGGCTTCCCTCG
CTTGCCCGGCATGGAGCGAAAGGAGCTTCTTGCTAAAAATGTGGAGATCA
TCACCATGCACGCCGCGGCGCTGGATGAATACGCCAGCCGAGCCGTGAAG
GTGCTAGTGGTGGCTAATCCTGCCAACACACTGGCGCTCATTGCGAAAAA
ACGCGCGGCCAGCCTGCCGGCGGAAAACTTCTCGTGCTTAACGCGATTGG
ACCATGACCGTCTCCGAGGCATGATCGCCAAAAAAATTGACTCCCTTAAG
ATTCCCGATGCGCATGGAGCTGTGACTGCCATGCAGGTGCGGAACGTGAT
CATATGGGGCAACCACTCGAGCACCCAGGTCCCCTCTGCGGCGAAAGCTC
AGGTCCGGCTAGGGGGCAGATGGGTGCCCGTCTTGGACATCAttggagac
gaggaggcagttTGGCTGCACGACGAATTGGTGACGCAAGTGCAACAACG
GGGCGCAGAAATCTTGGCGGCCCGAAAGTTGAGCTCGGCGTTGAGCGCGG
CCCAGGCGATTGCGAATCATTTTAAGGACTAG
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Synonyms
Publications