EWM27982.1, cds2650 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27982.1 vs. NCBI_GenBank
Match: gi|585110323|gb|EWM27982.1| (malate cytoplasmic isoform 2 [Nannochloropsis gaditana]) HSP 1 Score: 701.049 bits (1808), Expect = 0.000e+0 Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0 Query: 1 MKNPQAEEKRVLVYEHVGNPTNTDEISLNGLTIYLASTFSFVLAQLQGVGTRAEPNNLTKYRTDVRRMIGREEHAPTCVKRVLITGGAGQIAYALLPHLISGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLRVAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVKVLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLKIPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLGGRWVPVLDIIGDEEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD 343 MKNPQAEEKRVLVYEHVGNPTNTDEISLNGLTIYLASTFSFVLAQLQGVGTRAEPNNLTKYRTDVRRMIGREEHAPTCVKRVLITGGAGQIAYALLPHLISGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLRVAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVKVLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLKIPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLGGRWVPVLDIIGDEEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD Sbjct: 1 MKNPQAEEKRVLVYEHVGNPTNTDEISLNGLTIYLASTFSFVLAQLQGVGTRAEPNNLTKYRTDVRRMIGREEHAPTCVKRVLITGGAGQIAYALLPHLISGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLRVAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVKVLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLKIPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLGGRWVPVLDIIGDEEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD 343
BLAST of EWM27982.1 vs. NCBI_GenBank
Match: gi|673050905|ref|XP_008879413.1| (hypothetical protein H310_13626 [Aphanomyces invadans] >gi|574464946|gb|ETV91989.1| hypothetical protein H310_13626 [Aphanomyces invadans]) HSP 1 Score: 263.077 bits (671), Expect = 1.535e-82 Identity = 141/270 (52.22%), Postives = 180/270 (66.67%), Query Frame = 0 Query: 75 APTCVKRVLITGGAGQIAYALLPHLISGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLRVAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVKVLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLKIPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLG-GRWVPVLDIIGDEEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD 343 A T + V+++G AGQ+AY+LLP L SGRV GP R+ + LLDI + L GV ME+ D A +V +V TTDL+ AF D D AILLGGFPR GMERKEL++KN I AL+ YA ++VKVLVVANPANT LIA K A S+P ENFS LTRLDH+R+R ++ KKI S P+ H V++ ++N +IWGNHS+TQVP AA +++ G P+ D + D + W+ L VQ RGA I+ ARKLSSA+S A AIA H D Sbjct: 2 AATSIVNVVVSGAAGQVAYSLLPLLCSGRVLGPDQRIHLRLLDIPQSLEVLSGVVMELNDCAFHLVHEIVPTTDLQTAFQDADIAILLGGFPRKQGMERKELISKNGSIFKAQGEALELYARKSVKVLVVANPANTNCLIAMKHAPSIPTENFSALTRLDHERMRSLLVKKIQSY--PE-HKHVSSQHLKNCVIWGNHSNTQVPDAAHVVIQMADGSVAPLADFLQDPD--WIDSSLRPLVQNRGAAIIQARKLSSAMSVAAAIAGHMND 266
BLAST of EWM27982.1 vs. NCBI_GenBank
Match: gi|291386712|ref|XP_002709890.1| (PREDICTED: malate dehydrogenase, cytoplasmic [Oryctolagus cuniculus]) HSP 1 Score: 262.307 bits (669), Expect = 2.428e-82 Identity = 139/263 (52.85%), Postives = 177/263 (67.30%), Query Frame = 0 Query: 81 RVLITGGAGQIAYALLPHLISGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLRVAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVKVLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLKIPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLGGRWVPVLDIIGDEEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD 343 RVL+TG AGQIAY+LL + +G VFG +++ LLDI L GV ME++D A P++ V+TT VAF D+D AIL+G PR GMERK+LL NV+I AALD+YA ++VKV+VV NPANT L A K A S+P ENFSCLTRLDH+R + IA K+ VTA V+NVIIWGNHSSTQ P A+V+L G+ V V + + D+ WL E +T VQQRGA ++ ARKLSSA+SAA+AIA+H +D Sbjct: 6 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILLLLDITPMMGVLDGVLMELQDCALPLLKDVITTDKEEVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKL----------GVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDS--WLKGEFITTVQQRGAAVIKARKLSSAMSAAKAIADHVRD 256
BLAST of EWM27982.1 vs. NCBI_GenBank
Match: gi|685581826|ref|XP_009182563.1| (PREDICTED: malate dehydrogenase, cytoplasmic [Papio anubis]) HSP 1 Score: 260.766 bits (665), Expect = 1.247e-81 Identity = 138/263 (52.47%), Postives = 175/263 (66.54%), Query Frame = 0 Query: 81 RVLITGGAGQIAYALLPHLISGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLRVAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVKVLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLKIPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLGGRWVPVLDIIGDEEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD 343 RVL+TG AGQIAY+LL + +G VFG +++ LLDI L GV ME++D A P++ V+ T VAF D+D AIL+G PR GMERK+LL NV+I AALD+YA ++VKV+VV NPANT L A K A S+P ENFSCLTRLDH+R + IA K+ VTA V+NVIIWGNHSSTQ P A+V+L G+ V V + + D+ WL E VT VQQRGA ++ ARKLSSA+SAA+AI +H +D Sbjct: 6 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLTDVIATDKEEVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKL----------GVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDS--WLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRD 256
BLAST of EWM27982.1 vs. NCBI_GenBank
Match: gi|375364639|gb|AFA55183.1| (malate dehydrogenase 1 [Ochotona curzoniae]) HSP 1 Score: 260.381 bits (664), Expect = 1.484e-81 Identity = 138/263 (52.47%), Postives = 176/263 (66.92%), Query Frame = 0 Query: 81 RVLITGGAGQIAYALLPHLISGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLRVAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVKVLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLKIPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLGGRWVPVLDIIGDEEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD 343 RVL+TG AGQIAY+LL + +G VFG +++ LLDI L GV ME++D A P++ V+ T VAF D+D AIL+G PR GMERK+LL NV+I AALD+YA ++VKV+VV NPANT L A K A S+P ENFSCLTRLDH+R + IA K+ VTA V+NVIIWGNHSSTQ P A+V+L G+ V V + + D+ WL E +T VQQRGA ++ ARKLSSA+SAA+AIA+H +D Sbjct: 6 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKL----------GVTADNVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEAVKDDS--WLKGEFITTVQQRGAAVIKARKLSSAMSAAKAIADHVRD 256
BLAST of EWM27982.1 vs. NCBI_GenBank
Match: gi|504135373|ref|XP_004580163.1| (PREDICTED: malate dehydrogenase, cytoplasmic isoform X1 [Ochotona princeps]) HSP 1 Score: 259.996 bits (663), Expect = 1.903e-81 Identity = 138/263 (52.47%), Postives = 176/263 (66.92%), Query Frame = 0 Query: 81 RVLITGGAGQIAYALLPHLISGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLRVAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVKVLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLKIPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLGGRWVPVLDIIGDEEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD 343 RVL+TG AGQIAY+LL + +G VFG +++ LLDI L GV ME++D A P++ V+ T VAF D+D AIL+G PR GMERK+LL NV+I AALD+YA ++VKV+VV NPANT L A K A S+P ENFSCLTRLDH+R + IA K+ VTA V+NVIIWGNHSSTQ P A+V+L G+ V V + + D+ WL E +T VQQRGA ++ ARKLSSA+SAA+AIA+H +D Sbjct: 6 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKL----------GVTADNVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDS--WLKGEFITTVQQRGAAVIKARKLSSAMSAAKAIADHVRD 256
BLAST of EWM27982.1 vs. NCBI_GenBank
Match: gi|57092971|ref|XP_531844.1| (PREDICTED: malate dehydrogenase, cytoplasmic isoform X1 [Canis lupus familiaris] >gi|928148200|ref|XP_013973044.1| PREDICTED: malate dehydrogenase, cytoplasmic isoform X2 [Canis lupus familiaris]) HSP 1 Score: 259.996 bits (663), Expect = 1.988e-81 Identity = 137/263 (52.09%), Postives = 176/263 (66.92%), Query Frame = 0 Query: 81 RVLITGGAGQIAYALLPHLISGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLRVAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVKVLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLKIPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLGGRWVPVLDIIGDEEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD 343 RVL+TG AGQIAY+LL + +G VFG +++ LLDI L GV ME++D A P++ V+ T VAF D+D AIL+G PR GMERK+LL NV+I AAL++YA ++VKV+VV NPANT L A K A S+P ENFSCLTRLDH+R + IA K+ VT+ V+NVIIWGNHSSTQ P + A+V+L G+ V V D + DE WL E +T VQQRGA ++ ARKLSSA+SAA+AI +H +D Sbjct: 6 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALEKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKL----------GVTSDDVKNVIIWGNHSSTQYPDVSHAKVKLQGKEVGVYDALKDES--WLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRD 256
BLAST of EWM27982.1 vs. NCBI_GenBank
Match: gi|992073320|ref|NP_001307033.1| (malate dehydrogenase, cytoplasmic isoform MDH1 [Macaca mulatta]) HSP 1 Score: 259.996 bits (663), Expect = 2.469e-81 Identity = 138/263 (52.47%), Postives = 175/263 (66.54%), Query Frame = 0 Query: 81 RVLITGGAGQIAYALLPHLISGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLRVAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVKVLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLKIPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLGGRWVPVLDIIGDEEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD 343 RVL+TG AGQIAY+LL + +G VFG +++ LLDI L GV ME++D A P++ V+ T VAF D+D AIL+G PR GMERK+LL NV+I AALD+YA ++VKV+VV NPANT L A K A S+P ENFSCLTRLDH+R + IA K+ VTA V+NVIIWGNHSSTQ P A+V+L G+ V V + + D+ WL E VT VQQRGA ++ ARKLSSA+SAA+AI +H +D Sbjct: 6 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKL----------GVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDS--WLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRD 256
BLAST of EWM27982.1 vs. NCBI_GenBank
Match: gi|635080417|ref|XP_007968663.1| (PREDICTED: malate dehydrogenase, cytoplasmic [Chlorocebus sabaeus]) HSP 1 Score: 259.996 bits (663), Expect = 2.469e-81 Identity = 138/263 (52.47%), Postives = 175/263 (66.54%), Query Frame = 0 Query: 81 RVLITGGAGQIAYALLPHLISGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLRVAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVKVLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLKIPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLGGRWVPVLDIIGDEEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD 343 RVL+TG AGQIAY+LL + +G VFG +++ LLDI L GV ME++D A P++ V+ T VAF D+D AIL+G PR GMERK+LL NV+I AALD+YA ++VKV+VV NPANT L A K A S+P ENFSCLTRLDH+R + IA K+ VTA V+NVIIWGNHSSTQ P A+V+L G+ V V + + D+ WL E VT VQQRGA ++ ARKLSSA+SAA+AI +H +D Sbjct: 6 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKL----------GVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDS--WLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRD 256
BLAST of EWM27982.1 vs. NCBI_GenBank
Match: gi|795102147|ref|XP_011800061.1| (PREDICTED: malate dehydrogenase, cytoplasmic isoform X2 [Colobus angolensis palliatus]) HSP 1 Score: 259.996 bits (663), Expect = 2.519e-81 Identity = 138/263 (52.47%), Postives = 175/263 (66.54%), Query Frame = 0 Query: 81 RVLITGGAGQIAYALLPHLISGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLRVAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVKVLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLKIPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLGGRWVPVLDIIGDEEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD 343 RVL+TG AGQIAY+LL + +G VFG +++ LLDI L GV ME++D A P++ V+ T VAF D+D AIL+G PR GMERK+LL NV+I AALD+YA ++VKV+VV NPANT L A K A S+P ENFSCLTRLDH+R + IA K+ VTA V+NVIIWGNHSSTQ P A+V+L G+ V V + + D+ WL E VT VQQRGA ++ ARKLSSA+SAA+AI +H +D Sbjct: 7 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKL----------GVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDS--WLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRD 257 The following BLAST results are available for this feature:
BLAST of EWM27982.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|