EWM28023.1, cds2644 (CDS) Nannochloropsis gaditana

Overview
NameEWM28023.1
Unique Namecds2644
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:885759..888893 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28023.1
Producttnf receptor-associated factor 4
Orig transcript idgnl|cribi|Naga_100008g17.7915.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:885759..888893 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0007165signal transduction
GO:0006955immune response
GO:0016567protein ubiquitination
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
IPR001293Znf_TRAF
IPR017907Znf_RING_CS
IPR027139TRAF6
IPR013323SIAH-type
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM28023.1 vs. NCBI_GenBank
Match: gi|585110364|gb|EWM28023.1| (tnf receptor-associated factor 4 [Nannochloropsis gaditana])

HSP 1 Score: 2131.3 bits (5521), Expect = 0.000e+0
Identity = 1044/1044 (100.00%), Postives = 1044/1044 (100.00%), Query Frame = 0
Query:    1 MAPETNPEPGRTELTNGTEARRSEGHAAPSSPVQSSISSSRDPHPVLRPRAGFGNGIPHVSQRLVAGMPSFPGSPVSPSLVVTGHEDFRVQGHDNNALVHDEVMAPLSQVVLPFHGTQERGQEVVFSSHAAGHPVASEHTPAQDDAGVENKEDGEKQNKKEGEVQTSNWSGIRRDAGSSETNGRRGVGIGAEEEEEEEEDEEEDEDDDGEDEQDEEDEEEEEEEEEEEDANEADDEEEDEEVVGEDEGNEEEEDEADGGKEEIGRRHERENISSVQGTRAVVPVFRERHGGGRGALSGASVSHALPLAGGVLRMRRSRGVSSIQAANGSRVRPPSAGSVRASPAGSRLEPPAPFASAGPSPSPRTCAEVSGEQAGRDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRWFFPPATHYPAPIVGANCCPSSPCLGPPSSSASSLSFLTPWPAESAKEGDGQPQVCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRRRTSSYDPSSPAPPSVPPSQATPPAPRSDRTPQTHTGTPPASTGPHSSPFIPLVLSVPIRYGEWLLQLATAWACYAFGGGRARADFSDASFPYLSSFISVRYIALFLSLIPAMAVQTLTHRCKLEKPIVQGMVMGVCMYWVEWRALAGSLLLEEFLHYGLIYACGQWLLVDSAEREGSVRWDAYVRRCIEEPGARFRGILLLTLATIMLLVGQSWALVKGIFFRTTGTMVSFMFRMILGRFMKQTYQMPRPPATSAAVRLLQEQGQWPPPGHYMLLASRTLLALSVMGIALVSLY 1044
            MAPETNPEPGRTELTNGTEARRSEGHAAPSSPVQSSISSSRDPHPVLRPRAGFGNGIPHVSQRLVAGMPSFPGSPVSPSLVVTGHEDFRVQGHDNNALVHDEVMAPLSQVVLPFHGTQERGQEVVFSSHAAGHPVASEHTPAQDDAGVENKEDGEKQNKKEGEVQTSNWSGIRRDAGSSETNGRRGVGIGAEEEEEEEEDEEEDEDDDGEDEQDEEDEEEEEEEEEEEDANEADDEEEDEEVVGEDEGNEEEEDEADGGKEEIGRRHERENISSVQGTRAVVPVFRERHGGGRGALSGASVSHALPLAGGVLRMRRSRGVSSIQAANGSRVRPPSAGSVRASPAGSRLEPPAPFASAGPSPSPRTCAEVSGEQAGRDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRWFFPPATHYPAPIVGANCCPSSPCLGPPSSSASSLSFLTPWPAESAKEGDGQPQVCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRRRTSSYDPSSPAPPSVPPSQATPPAPRSDRTPQTHTGTPPASTGPHSSPFIPLVLSVPIRYGEWLLQLATAWACYAFGGGRARADFSDASFPYLSSFISVRYIALFLSLIPAMAVQTLTHRCKLEKPIVQGMVMGVCMYWVEWRALAGSLLLEEFLHYGLIYACGQWLLVDSAEREGSVRWDAYVRRCIEEPGARFRGILLLTLATIMLLVGQSWALVKGIFFRTTGTMVSFMFRMILGRFMKQTYQMPRPPATSAAVRLLQEQGQWPPPGHYMLLASRTLLALSVMGIALVSLY
Sbjct:    1 MAPETNPEPGRTELTNGTEARRSEGHAAPSSPVQSSISSSRDPHPVLRPRAGFGNGIPHVSQRLVAGMPSFPGSPVSPSLVVTGHEDFRVQGHDNNALVHDEVMAPLSQVVLPFHGTQERGQEVVFSSHAAGHPVASEHTPAQDDAGVENKEDGEKQNKKEGEVQTSNWSGIRRDAGSSETNGRRGVGIGAEEEEEEEEDEEEDEDDDGEDEQDEEDEEEEEEEEEEEDANEADDEEEDEEVVGEDEGNEEEEDEADGGKEEIGRRHERENISSVQGTRAVVPVFRERHGGGRGALSGASVSHALPLAGGVLRMRRSRGVSSIQAANGSRVRPPSAGSVRASPAGSRLEPPAPFASAGPSPSPRTCAEVSGEQAGRDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRWFFPPATHYPAPIVGANCCPSSPCLGPPSSSASSLSFLTPWPAESAKEGDGQPQVCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRRRTSSYDPSSPAPPSVPPSQATPPAPRSDRTPQTHTGTPPASTGPHSSPFIPLVLSVPIRYGEWLLQLATAWACYAFGGGRARADFSDASFPYLSSFISVRYIALFLSLIPAMAVQTLTHRCKLEKPIVQGMVMGVCMYWVEWRALAGSLLLEEFLHYGLIYACGQWLLVDSAEREGSVRWDAYVRRCIEEPGARFRGILLLTLATIMLLVGQSWALVKGIFFRTTGTMVSFMFRMILGRFMKQTYQMPRPPATSAAVRLLQEQGQWPPPGHYMLLASRTLLALSVMGIALVSLY 1044          
BLAST of EWM28023.1 vs. NCBI_GenBank
Match: gi|553196279|ref|XP_005856307.1| (tnf receptor-associated factor 4, partial [Nannochloropsis gaditana CCMP526] >gi|422292746|gb|EKU20048.1| tnf receptor-associated factor 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1659.81 bits (4297), Expect = 0.000e+0
Identity = 818/818 (100.00%), Postives = 818/818 (100.00%), Query Frame = 0
Query:    1 MAPETNPEPGRTELTNGTEARRSEGHAAPSSPVQSSISSSRDPHPVLRPRAGFGNGIPHVSQRLVAGMPSFPGSPVSPSLVVTGHEDFRVQGHDNNALVHDEVMAPLSQVVLPFHGTQERGQEVVFSSHAAGHPVASEHTPAQDDAGVENKEDGEKQNKKEGEVQTSNWSGIRRDAGSSETNGRRGVGIGAEEEEEEEEDEEEDEDDDGEDEQDEEDEEEEEEEEEEEDANEADDEEEDEEVVGEDEGNEEEEDEADGGKEEIGRRHERENISSVQGTRAVVPVFRERHGGGRGALSGASVSHALPLAGGVLRMRRSRGVSSIQAANGSRVRPPSAGSVRASPAGSRLEPPAPFASAGPSPSPRTCAEVSGEQAGRDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRWFFPPATHYPAPIVGANCCPSSPCLGPPSSSASSLSFLTPWPAESAKEGDGQPQVCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRRRTSSYDPSSPAPPSVPPSQATPPAPRSDRTPQTHTGTPPASTGPHSSPFIPLVLSVPIRYGEWLLQLA 818
            MAPETNPEPGRTELTNGTEARRSEGHAAPSSPVQSSISSSRDPHPVLRPRAGFGNGIPHVSQRLVAGMPSFPGSPVSPSLVVTGHEDFRVQGHDNNALVHDEVMAPLSQVVLPFHGTQERGQEVVFSSHAAGHPVASEHTPAQDDAGVENKEDGEKQNKKEGEVQTSNWSGIRRDAGSSETNGRRGVGIGAEEEEEEEEDEEEDEDDDGEDEQDEEDEEEEEEEEEEEDANEADDEEEDEEVVGEDEGNEEEEDEADGGKEEIGRRHERENISSVQGTRAVVPVFRERHGGGRGALSGASVSHALPLAGGVLRMRRSRGVSSIQAANGSRVRPPSAGSVRASPAGSRLEPPAPFASAGPSPSPRTCAEVSGEQAGRDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRWFFPPATHYPAPIVGANCCPSSPCLGPPSSSASSLSFLTPWPAESAKEGDGQPQVCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRRRTSSYDPSSPAPPSVPPSQATPPAPRSDRTPQTHTGTPPASTGPHSSPFIPLVLSVPIRYGEWLLQLA
Sbjct:    8 MAPETNPEPGRTELTNGTEARRSEGHAAPSSPVQSSISSSRDPHPVLRPRAGFGNGIPHVSQRLVAGMPSFPGSPVSPSLVVTGHEDFRVQGHDNNALVHDEVMAPLSQVVLPFHGTQERGQEVVFSSHAAGHPVASEHTPAQDDAGVENKEDGEKQNKKEGEVQTSNWSGIRRDAGSSETNGRRGVGIGAEEEEEEEEDEEEDEDDDGEDEQDEEDEEEEEEEEEEEDANEADDEEEDEEVVGEDEGNEEEEDEADGGKEEIGRRHERENISSVQGTRAVVPVFRERHGGGRGALSGASVSHALPLAGGVLRMRRSRGVSSIQAANGSRVRPPSAGSVRASPAGSRLEPPAPFASAGPSPSPRTCAEVSGEQAGRDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPDMPREPGHESRRWFFPPATHYPAPIVGANCCPSSPCLGPPSSSASSLSFLTPWPAESAKEGDGQPQVCSLGMAPELAWFVLILVVAVVLVEGLQDAPPVLSTELCIPLRPASWRAFFPGLPFPSNRRRTSSYDPSSPAPPSVPPSQATPPAPRSDRTPQTHTGTPPASTGPHSSPFIPLVLSVPIRYGEWLLQLA 825          
BLAST of EWM28023.1 vs. NCBI_GenBank
Match: gi|299472935|emb|CBN77336.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 150.214 bits (378), Expect = 3.619e-34
Identity = 86/217 (39.63%), Postives = 112/217 (51.61%), Query Frame = 0
Query:  377 DAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAHHQQQQHQQLSPPAPHCPLCRLKFTPAEVQPDQALSQEMSAARVRCGNARCERLMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSS-FPLSRHLQLVTLLLWEPYLW-LQQAER 591
            DAW CP+C   FD P   P C HTFC  C++ ++R   AA H+Q++     P  P CPLCR  FTP  VQP   + +EM  A V C N  C     PL  K+HQ+ECP  V  C H   GC ++  RRDL  H+  C YE+IKGL P++  S + + A +   E   ++Q   +A   A L +     S FP       V  LLW P  W L Q+ R
Sbjct:   27 DAWSCPICFMWFDMPVS-PPCQHTFCAGCLKSVVR---AAAHRQRRSGNTGPSGPACPLCREPFTPEVVQPSARIFEEMLKATVTCRNGDCAAQFCPLRWKKHQEECPSAVVQCMHHLVGCEWKGARRDLSLHVEGCAYEKIKGLIPRVSASLKQIHAQVHQLEARVMAQNAAVANTRALLAHQRRAGSVFP------AVYALLWRPPNWRLYQSPR 233          
BLAST of EWM28023.1 vs. NCBI_GenBank
Match: gi|971506682|dbj|GAQ91521.1| (hypothetical protein KFL_008000020 [Klebsormidium nitens])

HSP 1 Score: 117.087 bits (292), Expect = 1.521e-23
Identity = 80/256 (31.25%), Postives = 119/256 (46.48%), Query Frame = 0
Query:  376 RDAWVCPVCLQHFDEPCRLPRCTHTFCKTCIQGIIRNLVAAH--HQQQQHQQLSPPAP---HCPLCRLKF-TPAEVQPDQALSQEMSAARVRCGNARCER-LMTPLESKRHQDECPYGVAPCPHQHHGCGFQTLRRDLGAHLSMCPYEQIKGLFPKIRQSNEHVTAAMRGWENAFVSQQQTLATHAASLRNLEHRSSFPLSRHLQLVTLLLWEPYLWLQQAERWSRSFSLRLFAMQLYASPLVLILLKVAARSSPD 624
            +D WVCP+CL+  ++P   P C H+FC+TCI      L  AH  H+Q     ++ P P    CP+CR    +   V P+  L+ E+  A V+CGN  CE   +   E K+HQ  C Y    C  Q  GC ++ +R  LGAH   C Y+++      IR +NE V        +     +  +    A L++L     + L  + + V L+   P L+    E W  SF++  F    +  P  + LLK     SPD
Sbjct:   17 KDHWVCPLCLEIMEDPHSTP-CRHSFCRTCI-----TLAFAHETHRQMHSPHVATPIPPPKTCPICRADCGSEGGVTPNGGLAAELRGALVKCGNVGCEEGAVRASEWKQHQGVCAYAEVSCSQQPLGCHWRGVRHQLGAHELRCAYKELSAF---IRGTNEKVAQL----AHTVTHLEHQVRLQNALLQDLRRLHHYSLQDYFKFVYLIFCRPDLYETSRELWRHSFNVSWFQAVCFMLP--IFLLKFRLLFSPD 257          
The following BLAST results are available for this feature:
BLAST of EWM28023.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585110364|gb|EWM28023.1|0.000e+0100.00tnf receptor-associated factor 4 [Nannochloropsis ... [more]
gi|553196279|ref|XP_005856307.1|0.000e+0100.00tnf receptor-associated factor 4, partial [Nannoch... [more]
gi|299472935|emb|CBN77336.1|3.619e-3439.63conserved unknown protein [Ectocarpus siliculosus][more]
gi|971506682|dbj|GAQ91521.1|1.521e-2331.25hypothetical protein KFL_008000020 [Klebsormidium ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2652rna2652Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications