EWM27985.1, cds2643 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27985.1 vs. NCBI_GenBank
Match: gi|585110326|gb|EWM27985.1| (ribosomal rna-processing protein 7 [Nannochloropsis gaditana]) HSP 1 Score: 703.745 bits (1815), Expect = 0.000e+0 Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0 Query: 1 MLLSPTEGLVHMGWGGSTGLTAGLLLYLRFESTASIAAFQELGNMHVKGYKVITVPLNNNTSSPFSRFVYVRQHNNKGEEELPHGRTLFLANVPAQIGVDVHMYLKEAFAKFGEVELVRVKESSDNDAMSSYTVKSAIAFVIFRSSKGVKSVMNAPFGESRLPPPSVKASLAEYKPSKRQRKLHSQYQDTANETERKEAMAAALEEDVQSLVRRFRAKLPQAKLLQEEVDDYMARFEAAEEEAERKRKEAASKPDADGFVTVAYGKKRRRGGDADGSDGMNGGRKRGRAGSQKKKKKERELKNFYAHQMREAKREQLARLRTRFEEDKARIEKMKAARKFKPFG 344 MLLSPTEGLVHMGWGGSTGLTAGLLLYLRFESTASIAAFQELGNMHVKGYKVITVPLNNNTSSPFSRFVYVRQHNNKGEEELPHGRTLFLANVPAQIGVDVHMYLKEAFAKFGEVELVRVKESSDNDAMSSYTVKSAIAFVIFRSSKGVKSVMNAPFGESRLPPPSVKASLAEYKPSKRQRKLHSQYQDTANETERKEAMAAALEEDVQSLVRRFRAKLPQAKLLQEEVDDYMARFEAAEEEAERKRKEAASKPDADGFVTVAYGKKRRRGGDADGSDGMNGGRKRGRAGSQKKKKKERELKNFYAHQMREAKREQLARLRTRFEEDKARIEKMKAARKFKPFG Sbjct: 1 MLLSPTEGLVHMGWGGSTGLTAGLLLYLRFESTASIAAFQELGNMHVKGYKVITVPLNNNTSSPFSRFVYVRQHNNKGEEELPHGRTLFLANVPAQIGVDVHMYLKEAFAKFGEVELVRVKESSDNDAMSSYTVKSAIAFVIFRSSKGVKSVMNAPFGESRLPPPSVKASLAEYKPSKRQRKLHSQYQDTANETERKEAMAAALEEDVQSLVRRFRAKLPQAKLLQEEVDDYMARFEAAEEEAERKRKEAASKPDADGFVTVAYGKKRRRGGDADGSDGMNGGRKRGRAGSQKKKKKERELKNFYAHQMREAKREQLARLRTRFEEDKARIEKMKAARKFKPFG 344
BLAST of EWM27985.1 vs. NCBI_GenBank
Match: gi|635360950|emb|CCI49915.1| (Ev4687 [Albugo candida]) HSP 1 Score: 119.398 bits (298), Expect = 4.180e-28 Identity = 97/311 (31.19%), Postives = 142/311 (45.66%), Query Frame = 0 Query: 47 VKGYKVITVPLNNNTSSPFSRFVYVRQHNNKG-----EEELPHGRTLFLANVPAQIGVDVHMYLKEAFAKFGEVELVRVKESSDNDAMSSYTVK--------SAI--AFVIFRSSKGVKSVMNAPFGESRLPPPSVKASLAEYKPSKRQRKLHSQYQDTANETERKEAMAAALEEDVQSLVRRFRAKLPQAKLLQEEVDDYMARFEAAEEEAERKRKEAASKPDADGFVTVAYGKKRRRGGDADGSDGMNGGRKRGRAGSQKKKKKERELKNFYAHQMREAKREQLARLRTRFEEDKARIEKMKAARKFKP 342 V GY I +PL+N S + RF+YV++H+++ +L RT+ + N+P Q G D ++KE F+K G V+ + + ++ ND S++ + S I A V+FRS K V ++++ F +L P K L Q + ++R K P ++E D YMA F+A E RK + D DGF TV KR+ D D KK+K +EL++FY Q+RE KR QL LR RFEED +IEK+K A KF P Sbjct: 4 VGGYHSIALPLHN---SLYYRFIYVKKHDDRASHSEIHNQLASNRTVHVVNLPYQAGDD---WIKECFSKVGMVQSIH-RNTAQNDPAVSHSAEVNTDQGACSLINSAHVVFRSEKSVATLLST-FLLDQLAPLPTKLGL-------------------------------------QGYLEQYRRKRPGLAAIKEFTDKYMAEFDAREAAEIADRKTMQHQIDEDGFQTVV-NPKRKIPMDLD---------------RLPKKQKSKELQDFYRFQLREKKRNQLKSLRERFEEDCQQIEKLKCANKFHP 253
BLAST of EWM27985.1 vs. NCBI_GenBank
Match: gi|298714128|emb|CBJ27309.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 120.939 bits (302), Expect = 5.863e-28 Identity = 112/339 (33.04%), Postives = 159/339 (46.90%), Query Frame = 0 Query: 47 VKGYKVITVPLNN---NTSSPFSRFVYVRQH-----------NNKGEEELP----HGRTLFLANVPAQIG----VDVHMYLKEAFAKFGEVELVRVKESSDN-------DAMSS------YTVKSAIAFVIFRSSKGVKSVM---NAPFGESRLPPPSVKASLAEYKPSKRQRKLHSQYQDTANETERKEAMAAALEEDVQSLVRRFRAKLPQAKLLQEEVDDYMARFEAAEEEAERKRKEAASKPDAD-GFVTVAYGKKRRR---GGDADGSDGMNGGRKRGRAGSQKKKKKERELKNFYAHQMREAKREQLARLRTRFEEDKARIEKMKAARKFKPF 343 KGY+V+ L + TS F R +++++H +G E G TLF+ NV Q G + L+ A + G++ V+V ++ DA + +T + A V F S+KGV+ + P G S A+ K R + ++ +E + AAL ++R R K P K LQEEVD M RFE E +RK P+ D GFVTV Y +KR R GG + DG+ G G++KK+K EL +FY QMRE +REQLA LR++FE+DKAR+ KMK RKF+PF Sbjct: 5 AKGYRVVPQALADAGAGTSRGF-RHLHLKEHKGLFKAAVSAAGGEGGRETTAASARGTTLFVGNVDDQGGRLCRKTIEARLRRALSPCGKILHVQVSAAASAATGGGVGDARGTTVTGRKHTGAARFAHVCFSSTKGVQRALALEQLPSGASTASATGGGEGGADTKAPTRDDEEEDPEEELRDENGDETCGYAAL-------IQRHRRKFPPRKALQEEVDATMLRFEEEESAEIAQRKAMLENPEGDDGFVTVTYKRKRGRNSGGGTGNPPDGVVAG------GAKKKRKGAGELSDFYRFQMRETRREQLATLRSKFEQDKARVAKMKEQRKFRPF 329
BLAST of EWM27985.1 vs. NCBI_GenBank
Match: gi|575475338|ref|XP_006676963.1| (hypothetical protein BATDEDRAFT_86342 [Batrachochytrium dendrobatidis JAM81] >gi|328772509|gb|EGF82547.1| hypothetical protein BATDEDRAFT_86342 [Batrachochytrium dendrobatidis JAM81] >gi|1028571112|gb|OAJ39416.1| hypothetical protein BDEG_23265 [Batrachochytrium dendrobatidis JEL423]) HSP 1 Score: 114.775 bits (286), Expect = 1.520e-25 Identity = 86/283 (30.39%), Postives = 136/283 (48.06%), Query Frame = 0 Query: 66 SRFVYVRQHNNKGE-EELPHGRTLFLANVPAQIGVDVHMYLKEAFAKFGEVELVRVK----ESSDNDAMSSYTVKSAIAFVIFRSSKGVKSVMNAPFGESRLPPPSVKASLAEYKPSKRQRKLHSQYQDTANETERKEAMAAALEEDVQSLVRRFRAKLPQAKLLQEEVDDYMARFEAAEEEAERKRKEAASKPDADGFVTVAYGKKRRRGGDADGSDGMNGGRKRGRAGSQKKKKKERELKNFYAHQMREAKREQLARLRTRFEEDKARIEKMKAARKFKPF 343 + ++++R H+++ E LP RTLF+ N+P + M+L+ F + G +E V K +ND + S V + + S + F + S++ LA KP KR D + E AA + + + + A P+ LQ +VD M+ F+ +EE A+++ ++ + PD DGFV V G RG SDG + ++ K K L +FY Q REAKR +LA LR +FEEDK++IE +K R+FKP+ Sbjct: 81 NHYLFMRPHSSRSTLESLPAHRTLFIVNLPVDTNI---MHLRRLFRRCGVIERVVWKGLLGLEGENDDVDSIVVNETLVRRVHGWIHPTGSHAHVVFKDDE----SIEHVLA-MKPRKRMWSDVIDEDDQQTDDIDPEETQAANQMGINKWILQHIAMFPKTDHLQSQVDQAMSLFDDSEERAKQELEKKHNAPDDDGFVLVTRG----RGKYNTSSDGKGAVVTVAQESAKTLKPKNLGLVDFYRFQKREAKRNELAELRRKFEEDKSKIEVLKTKRRFKPY 351
BLAST of EWM27985.1 vs. NCBI_GenBank
Match: gi|1178049615|gb|ORE05252.1| (SSU rRNA processing protein [Rhizopus microsporus var. microsporus]) HSP 1 Score: 111.694 bits (278), Expect = 5.909e-25 Identity = 88/306 (28.76%), Postives = 139/306 (45.42%), Query Frame = 0 Query: 48 KGYKVITVPLNNNTSSPFSRFVYVRQHNNKGEEELPHGRTLFLANVPAQIGVDVHMYLKEAFAKFGEVELVRVK--------ESSDNDAMSSYTVKSAIAFVIFRSSKGVKSVMNAPFGESRLPPPSVKASLAEYKPSKRQRKLHSQYQDTANETERKEAMAAALEEDVQSLVRRFRAKLPQAKLLQEEVDDYMARFEAAEEEAERKRKEAASKPDADGFVTVAYGKKRRRGGDADGSDGM--NGGRKRGRAGSQKKKKKERELKNFYAHQMREAKREQLARLRTRFEEDKARIEKMKAARKFKPF 343 +G+K++ + +N+ + ++Y+R+H +K ++ RTLFL N+PA D H +++ F E+ E N + + A V+F S+ + V+N E + A E E ++ + + + ++ P AK LQEEVD +M +F+ E ER+ E +K D DGF V KK + +DGM G A K K K++EL +FY QMR+ K QL LR +FE+DKA+IEK+K +RKFKP+ Sbjct: 22 QGFKILPIVMND---AKVRHYLYIRKHESKSAQDKTSDRTLFLLNLPAD-TTDRH--IRKLFKGHNITEITYHDFKGHEGQIEQDSNRKLRPLFASGSSAHVVFEKSQDISEVLNMQRVEKKW----------------------------AKENESEQPLG------FERYILKYELSRPDAKKLQEEVDTFMIKFKEDEYRKERETLERMNKMDEDGFTVVVRHKKTK------TTDGMISVGAVSTDMAEEIKNKPKKKELVDFYRFQMRDRKMSQLTELRKKFEQDKAKIEKLKQSRKFKPY 281
BLAST of EWM27985.1 vs. NCBI_GenBank
Match: gi|291242375|ref|XP_002741084.1| (PREDICTED: ribosomal RNA-processing protein 7 homolog A-like [Saccoglossus kowalevskii]) HSP 1 Score: 110.923 bits (276), Expect = 8.282e-25 Identity = 100/311 (32.15%), Postives = 151/311 (48.55%), Query Frame = 0 Query: 47 VKGYKVITVPLNNNTSSPFSRFVYVRQHNNKGEEEL-PHGRTLFLANVPAQIGVDVHMYLKEAFAKFGEVELVRVKE----SSDNDAMSSYT-------VKS-AIAFVIFRSSKGVKSVMNAPFGESRLPPPSVKASLAEYKPSKRQRKLHSQYQDTANETERKEAMAAALEEDVQSLVRRFRAKLPQAKLLQEEVDDYMARFEAAEEEAERKRKEAASKPDADGFVTVAYGKKRRRGGDADGSDGMNGGRKRGRAGSQKKKKKER-ELKNFYAHQMREAKREQLARLRTRFEEDKARIEKMKAARKFKPF 343 V G+KV+ V LNN S R+ Y ++HN + ++ P RTLF+ N+PA + L+ F++ G VE V ++ S A+ T +K +A+VIF++ G+++ A YK Q TE A ++ + + +P +Q+E+D+YMA ++ E E E K E D+DG++TV +K R+ G A + +A Q+KKK+E+ EL NFY Q RE+KRE +A+LR RFEEDK +I MKAARKFKP+ Sbjct: 8 VAGFKVMPVKLNN--KSDVVRYFYYKEHNVREKDSSKPSDRTLFVVNIPAYCNEEC---LQRLFSQCGTVESVHFQQKPGISKTKTAVEESTFFKQVNLIKGYKVAYVIFKNPSGLQN-----------------AKKFNYK------------QPLLLSTEESPIFAG-----MKKWCKEYIDSIPDTTEMQKEIDEYMANYDRQELEEEEKTTELEGVADSDGWITVT--RKGRKPGLARTEVN------QTKATVQEKKKREKTELLNFYRFQFRESKREHIAQLRKRFEEDKEKIVAMKAARKFKPY 271
BLAST of EWM27985.1 vs. NCBI_GenBank
Match: gi|729714326|emb|CEI89436.1| (Putative SSU rRNA processing protein [Rhizopus microsporus]) HSP 1 Score: 110.923 bits (276), Expect = 1.250e-24 Identity = 88/306 (28.76%), Postives = 139/306 (45.42%), Query Frame = 0 Query: 48 KGYKVITVPLNNNTSSPFSRFVYVRQHNNKGEEELPHGRTLFLANVPAQIGVDVHMYLKEAFAKFGEVELVRVK--------ESSDNDAMSSYTVKSAIAFVIFRSSKGVKSVMNAPFGESRLPPPSVKASLAEYKPSKRQRKLHSQYQDTANETERKEAMAAALEEDVQSLVRRFRAKLPQAKLLQEEVDDYMARFEAAEEEAERKRKEAASKPDADGFVTVAYGKKRRRGGDADGSDGM--NGGRKRGRAGSQKKKKKERELKNFYAHQMREAKREQLARLRTRFEEDKARIEKMKAARKFKPF 343 +G+K++ + +N+ + ++Y+R+H +K ++ RTLFL N+PA D H +++ F E+ E N + S + A V+F S+ + V++ E + A E E ++ + + ++ P AK LQEEVD +M +F+ E ER+ E +K D DGF V KK + +DGM G A K K K++EL +FY QMR+ K QL LR +FE+DKA+IEK+K +RKFKP+ Sbjct: 22 QGFKILPIVMND---AKVRHYLYIRKHESKSAQDKTSDRTLFLLNLPAD-ATDRH--IRKLFKGHHITEITYHDFKGHEGQIEQDSNRKLRSLFASGSSAHVVFEKSQDITEVLDMQRVEKKW----------------------------AKENESEQPLG------FERYTLKYELSRPDAKKLQEEVDTFMIKFKEDEYRKERETLEKMNKMDEDGFTVVVRHKKTK------TTDGMISVGAVSTDMAEEIKNKPKKKELVDFYRFQMRDRKMSQLTELRKKFEQDKAKIEKLKQSRKFKPY 281
BLAST of EWM27985.1 vs. NCBI_GenBank
Match: gi|727145056|emb|CEG72778.1| (Putative SSU rRNA processing protein [Rhizopus microsporus]) HSP 1 Score: 109.383 bits (272), Expect = 7.208e-24 Identity = 87/306 (28.43%), Postives = 138/306 (45.10%), Query Frame = 0 Query: 48 KGYKVITVPLNNNTSSPFSRFVYVRQHNNKGEEELPHGRTLFLANVPAQIGVDVHMYLKEAFAKFGEVELVRVK--------ESSDNDAMSSYTVKSAIAFVIFRSSKGVKSVMNAPFGESRLPPPSVKASLAEYKPSKRQRKLHSQYQDTANETERKEAMAAALEEDVQSLVRRFRAKLPQAKLLQEEVDDYMARFEAAEEEAERKRKEAASKPDADGFVTVAYGKKRRRGGDADGSDGM--NGGRKRGRAGSQKKKKKERELKNFYAHQMREAKREQLARLRTRFEEDKARIEKMKAARKFKPF 343 +G+K++ + +N+ + ++Y+R+H +K ++ RTLFL N+PA D H +++ F E+ E N + + A V+F S+ + V++ E + A E E ++ + + ++ P AK LQEEVD +M +F+ E ER+ E +K D DGF V KK + +DGM G A K K K++EL +FY QMR+ K QL LR +FE+DKA+IEK+K +RKFKP+ Sbjct: 46 QGFKILPIVMND---AKVRHYLYIRKHESKSAQDKTSDRTLFLLNLPAD-ATDRH--IRKLFKGHHITEITYHDFKGHEGQIEQDSNRKLRPLFASGSSAHVVFEKSQDITEVLDMQRVEKKW----------------------------AKENESEQPLG------FERYTLKYELSRPDAKKLQEEVDTFMIKFKEDEYRKERETLEKMNKMDEDGFTVVVRHKKTK------TTDGMISVGAVSTDMAEEIKNKPKKKELVDFYRFQMRDRKMSQLTELRKKFEQDKAKIEKLKQSRKFKPY 305
BLAST of EWM27985.1 vs. NCBI_GenBank
Match: gi|384499997|gb|EIE90488.1| (SSU rRNA processing protein [Rhizopus delemar RA 99-880]) HSP 1 Score: 108.227 bits (269), Expect = 9.153e-24 Identity = 90/304 (29.61%), Postives = 139/304 (45.72%), Query Frame = 0 Query: 48 KGYKVITVPLNNNTSSPFSRFVYVRQHNNK-GEEELPHGRTLFLANVPAQIGVDVHMYLKEAF-------AKFGEVELVRVKESSDNDAMSSYTVKSAIAFVIFRSSKGVKSVMNAPFGESRLPPPSVKASLAEYKPSKRQRKLHSQYQDTANETERKEAMAAALEEDVQSLVRRFRAKLPQAKLLQEEVDDYMARFEAAEEEAERKRKEAASKPDADGFVTVAYGKKRRRGGDADGSDGMNGGRKRGRAGSQKKKKKERELKNFYAHQMREAKREQLARLRTRFEEDKARIEKMKAARKFKPF 343 +G+K++ V +N + ++Y+R+H +K E+ RTLFL N+P D H +++ F K+G VE D+ + A V+F SK + ++N E + A E+E ++ + + V R+ P AK LQEEVD +M +F+ + ER+ E +K D DGF V KK DGS + G A + + K K++EL +FY QMR+ K +L+ LR +FEEDKA+I K+K RKFKP+ Sbjct: 20 QGFKILPVIVNED---KVRHYIYMRKHESKLTEDTKTKDRTLFLLNLPVD-TTDRH--IRKLFKGHAITQIKYGSVE-------EDSTKWRQLLTSGSSAHVVFEKSKDISEILNMQRVEKKW----------------------------AKESENEKPLG------FERYVARYELSRPDAKKLQEEVDTFMIKFKEDQYRKERETLERMNKMDDDGFTVVVRHKK---AKTTDGSISV-GAVSADVAETMRSKPKKKELIDFYRFQMRDKKMNELSELRRKFEEDKAKIAKLKQNRKFKPY 272
BLAST of EWM27985.1 vs. NCBI_GenBank
Match: gi|301108870|ref|XP_002903516.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097240|gb|EEY55292.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 106.686 bits (265), Expect = 2.243e-23 Identity = 91/304 (29.93%), Postives = 134/304 (44.08%), Query Frame = 0 Query: 49 GYKVITVPLNNNTSSPFSRFVYVRQHNNK----GEEELPHGRTLFLANVPAQIGVDVHMYLKEAFAKFGEVELV------RVKESSDNDAMSSYTVKSAIAFVIFRSSKGVKSVMNAPFGESRLPPPSVKASLAEYKPSKRQRKLHSQYQDTANETERKEAMAAALEEDVQSLVRRFRAKLPQAKLLQEEVDDYMARFEAAEEEAERKRKEAASKPDADGFVTVAYGKKRRRGGDADGSDGMNGGRKRGRAGSQKKKKKERELKNFYAHQMREAKREQLARLRTRFEEDKARIEKMKAARKFKP 342 GY I +PL + S F RF+Y +QH+ K E L GRT +L N+PA +L+ G ++ V E D + ++ V + A V+F++ + + ++ A E+ P P KP +Q+ ++R P +++E D YMA F+ E E R+R+E ++ D DGF TV KKR G + + G KK+K +EL NFY Q RE KR QL LR RFEED+ ++KMK A KF+P Sbjct: 8 GYHAIALPLPH---SSFHRFIYAKQHDAKPGANAESVLATGRTAYLVNLPAYAS---EQWLRACLESVGAIQHVVAGSGGLFDEEDDEEDAATDCVVNRTAHVVFKAEESLDKMLQADALET--PAPQ--------KPC-----------------------------GLQAYAAKYRRNRPGLSVIKETADRYMATFDEMEAEDLRRREELKNEVDDDGFQTVVNTKKR---GIVQTEEVL---------GRPAKKQKSKELDNFYRFQTREKKRTQLKTLRERFEEDRQLVDKMKKANKFRP 254 The following BLAST results are available for this feature:
BLAST of EWM27985.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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