EWM27953.1, cds2634 (CDS) Nannochloropsis gaditana

Overview
NameEWM27953.1
Unique Namecds2634
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:867992..868150 -
Alignment locationCM002459.1:867416..867702 -
Alignment locationCM002459.1:867226..867292 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27953.1
Productcentrin 3
Orig transcript idgnl|cribi|Naga_100008g6.7845.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:867992..868150 -
CM002459.1supercontigCM002459.1:867416..867702 -
CM002459.1supercontigCM002459.1:867226..867292 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005856cytoskeleton
GO:0005635nuclear envelope
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
Homology
BLAST of EWM27953.1 vs. NCBI_GenBank
Match: gi|553181949|ref|XP_005853651.1| (centrin 3 [Nannochloropsis gaditana CCMP526] >gi|422295410|gb|EKU22709.1| centrin 3 [Nannochloropsis gaditana CCMP526] >gi|585110294|gb|EWM27953.1| centrin 3 [Nannochloropsis gaditana])

HSP 1 Score: 347.821 bits (891), Expect = 2.610e-121
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
Query:    1 MSMLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKDVISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF 170
            MSMLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKDVISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF
Sbjct:    1 MSMLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKDVISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF 170          
BLAST of EWM27953.1 vs. NCBI_GenBank
Match: gi|678317041|emb|CDW86002.1| (centrin [Stylonychia lemnae])

HSP 1 Score: 165.236 bits (417), Expect = 4.527e-49
Identity = 83/156 (53.21%), Postives = 112/156 (71.79%), Query Frame = 0
Query:   16 TKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKD-VISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF 170
             K K R +L+ EQK+E   +F LFDTD  G ID HELKV MRALGF++ K+EV+ L++E D  N G + +  +LE+MT   S RDP+EE+ KAF LF  D    IS+++LRRV+++LGE +S+DEL AM+ EFD+DGDG INE+EFL IMK +  +
Sbjct:   20 AKRKQRQELSDEQKQEIKEAFDLFDTDKTGTIDYHELKVAMRALGFDVKKQEVLNLMKEYDRDNTGQIEYHDFLEIMTHKISERDPVEEILKAFKLFDEDNTGRISLRNLRRVARELGENLSDDELQAMIDEFDKDGDGEINEQEFLNIMKQTSIY 175          
BLAST of EWM27953.1 vs. NCBI_GenBank
Match: gi|1049456521|emb|SBT71820.1| (centrin-3, putative [Plasmodium malariae] >gi|1070253826|emb|SCN45076.1| centrin-3, putative [Plasmodium malariae])

HSP 1 Score: 165.236 bits (417), Expect = 5.776e-49
Identity = 83/170 (48.82%), Postives = 117/170 (68.82%), Query Frame = 0
Query:    2 SMLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKD-VISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF 170
            S    ++ N  + S + +GR ++T EQK E   +F LFDT+  G ID HELKV +RALGF+I K +V+ L+RE D TN G + ++ +L++MT   S RDP EE+ KAF LF  D    IS+++LRRVS++LGE +S+DEL AM+ EFD+D DG I++EEFL IMK +  +
Sbjct:   10 SFTPRAITNRPISSNRRRGRNEITDEQKNEIKEAFDLFDTEKTGKIDYHELKVAIRALGFDIKKADVIELMREYDKTNSGYIDYNDFLDIMTQKISDRDPTEEIIKAFKLFDDDDTGKISLKNLRRVSRELGENLSDDELQAMIDEFDKDMDGEISQEEFLSIMKQTNLY 179          
BLAST of EWM27953.1 vs. NCBI_GenBank
Match: gi|1084863226|ref|XP_018641662.1| (centrin-3 [Plasmodium gaboni] >gi|1011105066|gb|KYN99655.1| centrin-3 [Plasmodium gaboni])

HSP 1 Score: 164.851 bits (416), Expect = 9.436e-49
Identity = 83/171 (48.54%), Postives = 118/171 (69.01%), Query Frame = 0
Query:    1 MSMLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKD-VISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF 170
            +S    ++ N  + S + +GR ++T EQK E   +F LFDT+  G ID HELKV +RALGF+I K +V+ L+RE D TN G + ++ +L++MT   S RDP EE+ KAF LF  D    IS+++LRRVS++LGE +S+DEL AM+ EFD+D DG I++EEFL IMK +  +
Sbjct:    9 VSFTPRAITNRPISSNRRRGRNEITDEQKNEIKEAFDLFDTEKTGKIDYHELKVTIRALGFDIKKADVLELMREYDKTNSGHIDYNDFLDIMTQKISERDPTEEIIKAFKLFDDDDTGKISLKNLRRVSRELGENLSDDELQAMIDEFDKDMDGEISQEEFLSIMKQTSLY 179          
BLAST of EWM27953.1 vs. NCBI_GenBank
Match: gi|1084863200|ref|XP_018641663.1| (centrin-3 [Plasmodium gaboni] >gi|1011105067|gb|KYN99656.1| centrin-3 [Plasmodium gaboni])

HSP 1 Score: 164.851 bits (416), Expect = 9.964e-49
Identity = 83/171 (48.54%), Postives = 118/171 (69.01%), Query Frame = 0
Query:    1 MSMLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKD-VISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF 170
            +S    ++ N  + S + +GR ++T EQK E   +F LFDT+  G ID HELKV +RALGF+I K +V+ L+RE D TN G + ++ +L++MT   S RDP EE+ KAF LF  D    IS+++LRRVS++LGE +S+DEL AM+ EFD+D DG I++EEFL IMK +  +
Sbjct:    9 VSFTPRAITNRPISSNRRRGRNEITDEQKNEIKEAFDLFDTEKTGKIDYHELKVAIRALGFDIKKADVLELMREYDKTNSGHIDYNDFLDIMTQKISERDPTEEIIKAFKLFDDDDTGKISLKNLRRVSRELGENLSDDELQAMIDEFDKDMDGEISQEEFLSIMKQTSLY 179          
BLAST of EWM27953.1 vs. NCBI_GenBank
Match: gi|258597121|ref|XP_001347555.2| (centrin-3 [Plasmodium falciparum 3D7] >gi|579334399|gb|EUT85267.1| hypothetical protein PFAG_02962 [Plasmodium falciparum Santa Lucia] >gi|1016051783|emb|CZT98532.1| centrin-3 [Plasmodium falciparum 3D7])

HSP 1 Score: 164.466 bits (415), Expect = 1.295e-48
Identity = 83/171 (48.54%), Postives = 118/171 (69.01%), Query Frame = 0
Query:    1 MSMLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKD-VISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF 170
            +S    ++ N  + S + +GR ++T EQK E   +F LFDT+  G ID HELKV +RALGF+I K +V+ L+RE D TN G + ++ +L++MT   S RDP EE+ KAF LF  D    IS+++LRRVS++LGE +S+DEL AM+ EFD+D DG I++EEFL IMK +  +
Sbjct:    9 VSYTPRAITNRPISSNRRRGRNEITDEQKNEIKEAFDLFDTEKTGKIDYHELKVAIRALGFDIKKADVLDLMREYDKTNSGHIDYNDFLDIMTQKISERDPTEEIIKAFKLFDDDDTGKISLKNLRRVSRELGENLSDDELQAMIDEFDKDMDGEISQEEFLSIMKQTSLY 179          
BLAST of EWM27953.1 vs. NCBI_GenBank
Match: gi|1016051782|emb|CZT98531.1| (centrin-3 [Plasmodium falciparum 3D7])

HSP 1 Score: 164.466 bits (415), Expect = 1.382e-48
Identity = 83/171 (48.54%), Postives = 118/171 (69.01%), Query Frame = 0
Query:    1 MSMLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKD-VISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF 170
            +S    ++ N  + S + +GR ++T EQK E   +F LFDT+  G ID HELKV +RALGF+I K +V+ L+RE D TN G + ++ +L++MT   S RDP EE+ KAF LF  D    IS+++LRRVS++LGE +S+DEL AM+ EFD+D DG I++EEFL IMK +  +
Sbjct:    9 VSYTPRAITNRPISSNRRRGRNEITDEQKNEIKEAFDLFDTEKTGKIDYHELKVTIRALGFDIKKADVLDLMREYDKTNSGHIDYNDFLDIMTQKISERDPTEEIIKAFKLFDDDDTGKISLKNLRRVSRELGENLSDDELQAMIDEFDKDMDGEISQEEFLSIMKQTSLY 179          
BLAST of EWM27953.1 vs. NCBI_GenBank
Match: gi|1027949676|ref|XP_016655190.1| (centrin-3, putative [Plasmodium chabaudi chabaudi] >gi|577147225|gb|EUD70350.1| centrin-2 [Plasmodium vinckei petteri] >gi|675219400|emb|CDS45958.1| centrin-3, putative [Plasmodium chabaudi chabaudi] >gi|1061790970|emb|SCM02997.1| centrin-3, putative [Plasmodium chabaudi adami] >gi|1068919193|emb|SCM00426.1| centrin-3, putative [Plasmodium chabaudi chabaudi] >gi|1068923930|emb|SCM07722.1| centrin-3, putative [Plasmodium chabaudi adami])

HSP 1 Score: 163.696 bits (413), Expect = 2.630e-48
Identity = 83/171 (48.54%), Postives = 117/171 (68.42%), Query Frame = 0
Query:    1 MSMLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKD-VISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF 170
            +S     + N  + S + +GR ++T EQK E   +F LFDT+  G ID HELKV +RALGF+I K +V+ L+RE D TN G + ++ +L++MT   S RDP EE+ KAF LF  D    IS+++LRRVS++LGE +S+DEL AM+ EFD+D DG I++EEFL IMK +  +
Sbjct:    9 VSFTPRPITNRPISSNRRRGRNEITEEQKNEIKEAFDLFDTEKTGKIDYHELKVAIRALGFDIKKADVLELMREYDKTNSGYIDYNDFLDIMTQKISDRDPTEEIIKAFKLFDDDDTGKISLKNLRRVSRELGENLSDDELQAMIDEFDKDMDGEISQEEFLSIMKQTSLY 179          
BLAST of EWM27953.1 vs. NCBI_GenBank
Match: gi|675230951|emb|CDU16717.1| (centrin-3, putative [Plasmodium yoelii] >gi|675236167|emb|CDZ11248.1| centrin-3, putative [Plasmodium yoelii])

HSP 1 Score: 163.696 bits (413), Expect = 2.748e-48
Identity = 83/171 (48.54%), Postives = 117/171 (68.42%), Query Frame = 0
Query:    1 MSMLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKD-VISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF 170
            +S     + N  + S + +GR ++T EQK E   +F LFDT+  G ID HELKV +RALGF+I K +V+ L+RE D TN G + ++ +L++MT   S RDP EE+ KAF LF  D    IS+++LRRVS++LGE +S+DEL AM+ EFD+D DG I++EEFL IMK +  +
Sbjct:    9 VSFTPRPITNRPISSNRRRGRNEITDEQKNEIKEAFDLFDTEKTGKIDYHELKVAIRALGFDIKKADVLELMREYDKTNSGYIDYNDFLDIMTQKISDRDPTEEIIKAFKLFDDDDTGKISLKNLRRVSRELGENLSDDELQAMIDEFDKDMDGEISQEEFLSIMKQTSLY 179          
BLAST of EWM27953.1 vs. NCBI_GenBank
Match: gi|675225306|emb|CDS45244.1| (centrin-3, putative [Plasmodium berghei ANKA] >gi|991454538|emb|CXI09912.1| centrin-3, putative [Plasmodium berghei] >gi|1061781147|emb|SCL92927.1| centrin-3, putative [Plasmodium berghei] >gi|1063415423|emb|SCN22981.1| centrin-3, putative [Plasmodium berghei] >gi|1068928616|emb|SCM15753.1| centrin-3, putative [Plasmodium berghei] >gi|1068933248|emb|SCM17548.1| centrin-3, putative [Plasmodium berghei])

HSP 1 Score: 163.31 bits (412), Expect = 3.853e-48
Identity = 83/171 (48.54%), Postives = 117/171 (68.42%), Query Frame = 0
Query:    1 MSMLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKD-VISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF 170
            +S     + N  + S + +GR ++T EQK E   +F LFDT+  G ID HELKV +RALGF+I K +V+ L+RE D TN G + ++ +L++MT   S RDP EE+ KAF LF  D    IS+++LRRVS++LGE +S+DEL AM+ EFD+D DG I++EEFL IMK +  +
Sbjct:    9 VSFTPRPITNRPINSNRRRGRNEITDEQKNEIKEAFDLFDTEKTGKIDYHELKVAIRALGFDIKKADVLELMREYDKTNSGYIDYNDFLDIMTQKISDRDPTEEIIKAFKLFDDDDTGKISLKNLRRVSRELGENLSDDELQAMIDEFDKDMDGEISQEEFLSIMKQTSLY 179          
The following BLAST results are available for this feature:
BLAST of EWM27953.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553181949|ref|XP_005853651.1|2.610e-121100.00centrin 3 [Nannochloropsis gaditana CCMP526] >gi|4... [more]
gi|678317041|emb|CDW86002.1|4.527e-4953.21centrin [Stylonychia lemnae][more]
gi|1049456521|emb|SBT71820.1|5.776e-4948.82centrin-3, putative [Plasmodium malariae] >gi|1070... [more]
gi|1084863226|ref|XP_018641662.1|9.436e-4948.54centrin-3 [Plasmodium gaboni] >gi|1011105066|gb|KY... [more]
gi|1084863200|ref|XP_018641663.1|9.964e-4948.54centrin-3 [Plasmodium gaboni] >gi|1011105067|gb|KY... [more]
gi|258597121|ref|XP_001347555.2|1.295e-4848.54centrin-3 [Plasmodium falciparum 3D7] >gi|57933439... [more]
gi|1016051782|emb|CZT98531.1|1.382e-4848.54centrin-3 [Plasmodium falciparum 3D7][more]
gi|1027949676|ref|XP_016655190.1|2.630e-4848.54centrin-3, putative [Plasmodium chabaudi chabaudi]... [more]
gi|675230951|emb|CDU16717.1|2.748e-4848.54centrin-3, putative [Plasmodium yoelii] >gi|675236... [more]
gi|675225306|emb|CDS45244.1|3.853e-4848.54centrin-3, putative [Plasmodium berghei ANKA] >gi|... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2642rna2642Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications