rna2642, rna2642 (mRNA) Nannochloropsis gaditana

Overview
Namerna2642
Unique Namerna2642
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1714
Alignment locationCM002459.1:866846..868188 -

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Properties
Property NameValue
Productcentrin 3
Orig transcript idgnl|cribi|Naga_100008g6.7845.mrna
Orig protein idgnl|cribi|Naga_100008g6.7845
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:866846..868188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g6gene2526Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2642rna2642-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27953.1cds2634Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2642 ID=rna2642|Name=rna2642|organism=Nannochloropsis gaditana|type=mRNA|length=1714bp
TTCCCGCTTGACGCCCTGGCGTGCGCGGTAGTTGTCGTGTGCATGTCTTG
CAAGTCTGGGGATCAACGGCTTCGGAAATTTTCAGGGGGTACGGTCGCTC
TGGTCAGCACCCTGCCGCCCCCGTCTTGCCCCGTGCTTAATCCTCCCTCT
CCACGTTCACCATTCCCACCGACGCAACCACACTGATCCCTCAACAACCA
TCACAGGAGACGAAGATGTCTGCTAGTCTGGGCTATCAAGCCGCGCGAAG
GCTCATCCTGGGCGGAGCCACCAGGTACGACTTAACTCGAGCGGATAGGA
AAGTCCCCTCATTGAGAGATGCGGGGCTGCGCATGTGCGCTTGCGGGGTC
ACTTCTTGAACTATCCATTCCTTATTCTTCCTGCCATTTAAATGTCGTCT
GACTCATCGTCGCCCTCTCTGGCCGGTGGCTTTTCCCAACTCCAGGATGG
TCGCACGCGGGATGGCGTCAGAGAAGGAAATTGCGGCACGCATGAAGTCG
ACTGCAGGCATCAACAAGATCACCAAGACAATGAAGATGGTGGCAGCTTC
CAAGATGCGCGGCGATGAGGACCGTCTCAAGGCAGGGCGCCCATTCCAGA
AATGGGTGGATGGCTTCACCCCACCCCCGGTCTTGCTGGAGGACTTTGCC
AAAAGCCTGGACAAGCTCCCGCAGAGCAACCTCCTCGTGATCATCACCAC
GGACCGAGGCCTCTGCGGCGGCGTCAACTCGTCCCTGGCCCGTGTCATGA
AGCATATGGTTCCGGCCTTGGACAAGGAGAAGAAGGACGTGCAGCTTTTC
ATCGTGGGGGACAAAGGACGCGCCACCATGGGGCGTCCGCTGGGTGAATT
TATCACACAAATCAATTCCGACTCCGGGACCCCGTACAATTTCTCCTTGG
CCGCAGCCCTTGCGCAAGACGTGACGCAGATCAAGGCGGACGCGGTTCAC
GTGGTTTTCAACCGGTTCCGCTCGGCCATCGCCTACGAAGCCACGGTGAA
GACGCTCTACCCCCCTGCGGCCTTGACTGGCGAGCCCTACGTGGAGTACG
AATTCGAGCCCGACACCAAGACGGAGGTGCTGGACGATATGTACGAGATG
GCGATTGCCACTACCATGTTCACCTCCATGCTGGAAAGTGCGGCGGCCGA
GCAGTCTTCCCGAATGAATGCGATGGAGAACGCGTCGAAGAACGGAGAGG
ACTTGATCAAGGAGCTTTCCATCCAATACAATCGAGCCCGGCAGTCTCGG
ATCACTACCGAGCTTGTGGAGATCATCTCGGGGGCTTCGGCTTTGGAGGG
CTAGGGAGAAGATTGGCGGAGAGGAGAGGTTTGAAACTGTCTAGTCAAGA
GGGAGGAGGAAGGAGGGAGGCCTTGGAAGACTTGTCCCGGCCTTGGTTCG
ATTAAAGGGAGGAGTTAGTAGCTGCAGTATCTTAGGGACCGTCTCTTGCA
TACAGGATAGGTGGCACAAAGAGGATAGAGGTGCCTTGTGGGGTAGCCAA
GGGCGGGTGGGGCGTTTGTCGGGGGAAAAATGACCGTCCACGTGGTTGGC
ACCGGCGAAGCGCAAAGCTATCTTGCGAAAACGAAAAAAGAAACAACGGA
CAACCAATCCACTCAGCGCGAGAGATCCAGGCGTATGTATGGGGTCGAAT
GAGGCGGTTATTGTTTCGGAGCCCCTGTGCTGTTCAGTCTCCTGACCGAC
ACTATTGACTACCG
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protein sequence of rna2642

>rna2642-protein ID=rna2642-protein|Name=rna2642|organism=Nannochloropsis gaditana|type=polypeptide|length=170bp
MSMLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLH
ELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRD
PLEEMKKAFLLFAGDKDVISVQDLRRVSKQLGEKMSEDELAAMVAEFDRD
GDGCINEEEFLQIMKGSGTF
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mRNA from alignment at CM002459.1:866846..868188-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2642 ID=rna2642|Name=rna2642|organism=Nannochloropsis gaditana|type=mRNA|length=1343bp|location=Sequence derived from alignment at CM002459.1:866846..868188- (Nannochloropsis gaditana)
CATGTCAGTCGACGAGCTGGGCGTTTGTGGGGAGGACGATGAGCATGTTG
ACCCATTCTCTTGGTAATCTGCAAATGCCATCAACCAAGAGCAAGGGCCG
GTATCAATTGACGCTGGAGCAGAAAGAAGAATTCACGACCAGTTTTCAAC
TATTCGACACGGATGGTAAAGGAGCAATTGATCTACATGAGCTCAAGGTA
CGGTTCTCGGGTACATTCCAATGTCTAAGTGTGTCAATATATTCTTGTTG
TTCTACTCTGTTTCGAGGCGCCACCCTCTTGACTTCAAAATTCCTGTGTA
GGTCTTGGAATATTTGGAACTGACTTATACTAGCGTGACTGAAATGCTAA
TGATTACGATAATGAAGATCCCATTTAGTGTAAGGCTCGGGGTTATACTT
ATTTTTTGGGTTTGAACAAGACATTCCCGATCCGTCCTTTGTCGCACCAC
CGACGCCTGCTCTATATCTGTCGACATCCCTCCCAGGTACTCATGCGGGC
TCTGGGCTTCAACATTCCCAAACGGGAGGTAGTGGCCCTGGTCCGAGAGA
TCGACCCGACGAACCATGGCATGGTATCGTTTGATACCTATCTGGAAGTC
ATGACCGACATGGCCTCGCGCCGCGATCCGCTCGAGGAGATGAAAAAGGC
CTTCCTGCTCTTTGCCGGCGACAAGGACGTTATCAGCGTGCAAGACCTGA
GGAGGGTGTCCAAACAATTGGGGGAGAAGATGTCGGAAGATGAGCTGGCA
GCCATGGTTGCCGAATTCGACAGGTATGTATGTCCCAGGGGGAAGGCCAA
GGGTATGAGGGGCACGAAGGTGAAGTCCACTGTCTGACGCAACCGCCTTG
ATCTACTGTCGGACGCAACCGCCTTGATCCATGCAAACATGTGCAGGGAC
GGGGATGGCTGCATCAACGAAGAGGAATTCTTGCAGATCATGAAAGGGAG
TGGGACATTCTAAGCTGCGAGGTGTGGAGGCGAGAGTCCTTCCACACGGA
TTATGCAGGTGGATGGCAAAAGTACGCTTCGATGCCAAGGTGAAAGCCTC
GACGTTTGTCAGTATTCGCTGGACTACATATACATGGCGGGGAGGCAGAA
TTTATCTTTTCCTAGGGTGCCGAAAGAAAGCTGGGTGGGAGAGGTTTGGG
TTTGGTTGTAAAGAAGAGAGGAGCGGTGAGTGTCCGGGCGCCGGGCCGAG
ACCTTCTCATTTCAAAGTATATTATTAGAGCACGCTGGTCCAGCGCTGAA
CGGATTCGGGGTGCAATAACACGTTTCGGTAGTCAATAGTGTCGGTCAGG
AGACTGAACAGCACAGGGGCTCCGAAACAATAACCGCCTCATT
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Coding sequence (CDS) from alignment at CM002459.1:866846..868188-

>rna2642 ID=rna2642|Name=rna2642|organism=Nannochloropsis gaditana|type=CDS|length=1539bp|location=Sequence derived from alignment at CM002459.1:866846..868188- (Nannochloropsis gaditana)
GGACGGGGATGGCTGCATCAACGAAGAGGAATTCTTGCAGATCATGAAAG
GGAGTGGGACATTCTAAGTACTCATGCGGGCTCTGGGCTTCAACATTCCC
AAACGGGAGGTAGTGGCCCTGGTCCGAGAGATCGACCCGACGAACCATGG
CATGGTATCGTTTGATACCTATCTGGAAGTCATGACCGACATGGCCTCGC
GCCGCGATCCGCTCGAGGAGATGAAAAAGGCCTTCCTGCTCTTTGCCGGC
GACAAGGACGTTATCAGCGTGCAAGACCTGAGGAGGGTGTCCAAACAATT
GGGGGAGAAGATGTCGGAAGATGAGCTGGCAGCCATGGTTGCCGAATTCG
ACAGATGAGCATGTTGACCCATTCTCTTGGTAATCTGCAAATGCCATCAA
CCAAGAGCAAGGGCCGGTATCAATTGACGCTGGAGCAGAAAGAAGAATTC
ACGACCAGTTTTCAACTATTCGACACGGATGGTAAAGGAGCAATTGATCT
ACATGAGCTCAAGGGACGGGGATGGCTGCATCAACGAAGAGGAATTCTTG
CAGATCATGAAAGGGAGTGGGACATTCTAAGTACTCATGCGGGCTCTGGG
CTTCAACATTCCCAAACGGGAGGTAGTGGCCCTGGTCCGAGAGATCGACC
CGACGAACCATGGCATGGTATCGTTTGATACCTATCTGGAAGTCATGACC
GACATGGCCTCGCGCCGCGATCCGCTCGAGGAGATGAAAAAGGCCTTCCT
GCTCTTTGCCGGCGACAAGGACGTTATCAGCGTGCAAGACCTGAGGAGGG
TGTCCAAACAATTGGGGGAGAAGATGTCGGAAGATGAGCTGGCAGCCATG
GTTGCCGAATTCGACAGATGAGCATGTTGACCCATTCTCTTGGTAATCTG
CAAATGCCATCAACCAAGAGCAAGGGCCGGTATCAATTGACGCTGGAGCA
GAAAGAAGAATTCACGACCAGTTTTCAACTATTCGACACGGATGGTAAAG
GAGCAATTGATCTACATGAGCTCAAGGGACGGGGATGGCTGCATCAACGA
AGAGGAATTCTTGCAGATCATGAAAGGGAGTGGGACATTCTAAGTACTCA
TGCGGGCTCTGGGCTTCAACATTCCCAAACGGGAGGTAGTGGCCCTGGTC
CGAGAGATCGACCCGACGAACCATGGCATGGTATCGTTTGATACCTATCT
GGAAGTCATGACCGACATGGCCTCGCGCCGCGATCCGCTCGAGGAGATGA
AAAAGGCCTTCCTGCTCTTTGCCGGCGACAAGGACGTTATCAGCGTGCAA
GACCTGAGGAGGGTGTCCAAACAATTGGGGGAGAAGATGTCGGAAGATGA
GCTGGCAGCCATGGTTGCCGAATTCGACAGATGAGCATGTTGACCCATTC
TCTTGGTAATCTGCAAATGCCATCAACCAAGAGCAAGGGCCGGTATCAAT
TGACGCTGGAGCAGAAAGAAGAATTCACGACCAGTTTTCAACTATTCGAC
ACGGATGGTAAAGGAGCAATTGATCTACATGAGCTCAAG
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Synonyms
Publications