rna2582, rna2582 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2582
Unique Name	rna2582
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3030
Alignment location	CM002459.1:720976..722359 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100120g24.6946.mrna
Orig protein id	gnl\|cribi\|Naga_100120g24.6946
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:720976..722359 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100120g24	gene2469	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2582	rna2582-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28085.1	cds2574	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:720976..722359-
coding sequence from alignment at CM002459.1:720976..722359-

mRNA sequence

>rna2582 ID=rna2582|Name=rna2582|organism=Nannochloropsis gaditana|type=mRNA|length=3030bp
ATGTTTGAAAAATCGCTCCAAGACCTAGTGAAGGGTATTCGCAGCCACAA
GCGGGACCCCACGGTCTTCATCTCCCAGTCTATCCAGGAGATTAAGGTGG
AGCTTCGGAGCGTCGACCCCTTCGTAAAGGCTCAGGCGGTCCGCAAACTC
ACATACCTCCAGATGATGGGCTACGACATGTCCTGGGCCTCTTTTGCCGT
GGTGGAGGTCATGTCCTCGCCGCGATTCGCGCATAAGCGCATCGGGTGCT
TGGCGGCTTGTCAGACGTTCACCGACGCCACGGACGTCGTCCTCCTCACC
ACCAACCTCCTCAAAAAAGAGTTCCAGTCGCCCAACCAGTACGAGGTGGG
CCTGGCAATCAACTGCCTTGCCAACATCGTCACCCGGGACCTGGCCAGAG
ACCTGATCGGAGACGTGGTGAGCCTGATCGCGCACTCCAAGCCCTACGTC
CGCAAAAAGGCGGTCCTTTCCCTGTACAAGCTCTACCTACGCTACCCACA
GGCCCTTCGCCTCACTTTCGAACGGCTCAAGGACAAGCTCGACGACGCCG
AGAGTGCCGTGGTGTCCTGCGCGGTCAACGTCATCTGCGAGCTGGCGAAC
AAGAACCCCACCAACTATTTGGCCCTCGCCCCCAAGTTTTTCCGCCTCCT
CACCACATCCAGCAACAACTGGATGCTCATCAAGGTGGTCAAGCTCCTGG
GTTCCCTCGTCTCGGAGGAGCCGCGCCTGGCCCGGAAGCTCCTGGAGCCC
TTGGCTACGATCATCCAGAACACGGCCGCCAAGTCCCTCCTCTACGAGTG
CATCCACACCGTCACGCTTGCCCTCCCTTACGCCCGCAAGCCCGGGGAAA
GCGCCGAGGGCGGACGAAACCTGCAGGCCGTGGTGGCGCTGTGCGCGGAC
CATTTGCGACAGTTTGTGGAGGACCCTGACCAAAATTTGAAGTACCTGGG
GCTGGTGGGTTTTGTGAACCTGATGAAATCCTTCCCGCGCGCTGTGGTCG
AGCACAAGGAACTTGTCCTCCTCTGCCTCTCGGACGACGACGTGACGATC
CGCATGCGGGCCCTAGAGCTGCTGACCGGCATGGTGACTCGGAGGAATTT
GACGGAGCTGGTGCACAAGCTCATGCAACACGTGCTCCTGGCGGAGGGGC
CCTACCGGGACGAGATCGTGCGGAAGATCCTCTTTATGTGCTCGCGCGAC
CGGTACGCCTACCTCTCCGACGTGTCCTGGTACCTCTCCGTCCTGGTGGA
CCTGGCTTACGTGCAGGGCCCCGTGCACGGCCCCCTGGTGGCCGCCCAGC
TCATCGACGTGTCGGTGCGCGCGGAGGTGGTGCGGGGGTACGCGGTCCGC
TGCATGCTGGGCCTGCTCCGGGATTCCAGCGACCTCTTCCTCGGACAGAG
CCAAGCGACCATGGCGCACGTCCTCTACGCGGCCGGCTGGATCATCGGCG
AGTACGCAGATCAGTTGCCTGGGCAAGGTCGGGAGGAAGGGGGCGAGGAA
GAGGAGGAGGAGGGCGAGGGGGAGGGAAAGCAAGCTGCCGGTCCGGGACT
GATGGAGACGAGCGCCCAGCCCAGCGCGGCGCCTGTCTTCGCCCAGGTTC
TGGCCGCCTACCTGGACCCGAGAGTGACGAACCTCCCGGAGGACGTGCAG
GTCGTGTACATGCAGAGCGCCTTGAAGGTGGTGGCCGCAGCCCCCCGGCA
CGTCCCGGAGGACGCGGGCTTGGAGGGCCTGCTCCTGATCTTGCGGGCCC
GCCTCTCCGTTTTCCTGCAGTCGGTCCACATCGAGGTGCAGGAGCGCGCG
GCGACCATGCGCAACCTTCTCGCCAGCTTGGGCATATGGCCGAAGCCGGC
GGAGAAGAGGGAAGGAGAGGGAGAGGGCGGGGGCGAGGGGAAGGAGGGAA
AGCAGGAACGTGGGCAGAAGGTGGTTGCAGAGGACCTCCTGCAGATGGAC
ATGGGCGTGGCGGGCGACGAAGGGCCGGAGTCGGGGGAGTCCCCGAGCAA
CGGGGGGAGCGGCGTCGCCCGCGGGGTGCGGGCCATGCGCCTGAATCGAG
GGATGCTCGAGGCGCTCTTCAGGGAGCAGCTCCAGCCCGTCAACCCCAAG
GCCCAGAGGAAAGTGCCCGTGCCCCCTGGGCTCGACCTGAGCGCCCCCAT
CAAGCCAGCGGCCCTGGCGGAGCTGGAGGAATTCCAGGGGGGCTTTCCCC
GCGACCCCGATCTGGCCAAGGTCACCTTCACGAACATCTTCGTGGCGGCG
GAGCCCGAGGAGGATTTGGCGTTGCCCTTGATTGAATTGGGGGATACGGA
CGCCGGCGCCCCTCCCTCCCTCGTCTCCTCGTCCCTGCTGGAGCCAGGAA
CCGATAGCGAGACCCGACGCATCAAGTCAGACGTCCTGGACCTCCTCCGC
TTTGACCTCGCTCCGGCCCAGCCGGGGGCCGCCCGCCTGCCGCCAGATGA
ATCCTTCATGGTCCTGGCGAGCTCGGGGCCGGAGGCGGACAGAAATGGGG
CGGGGCGGGTTTCGGTGGAGGAAGGCACGCACCGGGCGGAGCCGGGAGAG
GAAGGGAAGCAGGCAGCATCGGCGGCGCCCGGCGAGGGCCGCAGGCGGAT
GCGGAAGGCCCGCGAGAGGGCGAAGGTTCCAGTGCCGGACATGGATTCGA
ACCAGGAGAAAGGAGGCAGCGGAAGCGCAGAGAGCGGCGGAGGAGCGCCA
GGGAGCTATGGAGGGTTGCGCTTGCCACTGCTGAGAACGAAGGGGCTTCG
GGTCGAGTACAGCCTGACTCCGGACCCCTCGCACCAGCTGGTCACGCTCC
ATTTTCGATTCAAGGCGCCCGCCCCTCCCTCTTCCTCGGCGCCCCTGGCC
GTCCAAGACCTGCAGCTCACCCTCACCGACCTCCCGGAAGGGGTCACTCC
CCTCCTTCCCTCGTCGGGGGCCACGGCGGGCGTAGTGGTGGGGGCCCTGG
CGGGGGGGGGGCGGCCAAGGCCTCCCTCAAGCTCCGCCTTTCCTGCGCCC
TGCCCACCTTCACGCGCCCCATCCCCGTGA

protein sequence of rna2582

>rna2582-protein ID=rna2582-protein|Name=rna2582|organism=Nannochloropsis gaditana|type=polypeptide|length=357bp
MMARTCGYQLVAMVIFLRTCVAFVPPSSSLPPSPTLFSRSTRLSVGNVNV
DFYPGLRGLFDMGNIILEEVRAGGKEAEQEMAEMAGWVKDKVRVKQQVVQ
QSPVILHPVFGELVKDLTYKKIYCTSVQKLASIPIWEQQRIYRAERAQLL
ANDIKAKLQEGKALTLPGSLTVYEMGEEIGLLDGQHRLGALKLLMDSGVL
IPEAHLILVEVFPVKAQEDVKRLFTEINTAQPVSIIDMPDMADASEKEII
TQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGNAQ
QLLEWVKAKNDLLAARDDAAWLRAYKGRKPEAVEKAVLKARDNHFFLGME
PNWMDVE

mRNA from alignment at CM002459.1:720976..722359-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2582 ID=rna2582|Name=rna2582|organism=Nannochloropsis gaditana|type=mRNA|length=1384bp|location=Sequence derived from alignment at CM002459.1:720976..722359- (Nannochloropsis gaditana)
GTAAAGACTGTGCTTGGTGTCTTTCTTTCGACGTCGCGGTCCTTTTAGGG
TGCTGGGGATCGGATAGTGATGCTTTCTAACCGCGCCGGGCGCAACGGAA
CACTCTCTGAGGATGATCGCCTACTCTCTTTTTCTGCGCTTTATCACAGG
TGAAGAAATCAGGAAACAAGAAAAATGATGGCGCGTACATGCGGTTACCA
GCTCGTAGCCATGGTCATTTTTCTTCGGACTTGCGTGGCTTTCGTGCCTC
CCTCGTCCTCTCTGCCTCCATCTCCTACCCTCTTCTCCCGCTCGACCCGG
CTCTCGGTGGGAAATGTGAACGTGGACTTCTACCCCGGCCTACGAGGCCT
GTTTGACATGGGCAACATTATTCTGGAAGAAGTGCGTGCAGGCGGCAAAG
AGGCCGAGCAGGAGATGGCTGAGATGGCGGGCTGGGTCAAAGATAAAGTA
AGAGTGAAGCAGCAAGTGGTGCAGCAGAGCCCTGTGATCTTGCACCCTGT
GTTTGGGGAGCTTGTGAAGGACCTCACCTACAAAAAAATCTATTGCACGA
GTGTGCAAAAGCTTGCTTCCATCCCGATCTGGGAACAGCAGCGCATTTAC
CGGGCGGAACGAGCGCAGCTTCTAGCGAACGACATCAAAGCCAAGCTGCA
GGAAGGGAAAGCGCTGACCTTGCCGGGGTCCTTGACCGTCTACGAGATGG
GGGAGGAGATTGGACTGCTGGACGGACAGCACCGTCTGGGAGCGCTGAAG
CTCTTGATGGATTCGGGCGTGCTTATTCCCGAGGCGCACCTGATATTGGT
AGAAGTCTTCCCTGTCAAAGCGCAAGAGGATGTAAAGCGCCTCTTCACGG
AGATCAACACCGCGCAGGTAAGACCCTCTTCATGTGCCGCCTACTAGCAC
ACATCTGTTCTACCGAGCTTTCAAAGCTGGAAGAGGTCGCTGAGACCCGG
CATTGATCTAAAATCCGTGTATCCAACCCCATCCAGCCTGTGTCCATTAT
CGACATGCCCGATATGGCCGACGCCTCGGAGAAGGAGATCATCACGCAGA
CCGCCGAACTCCTTCGGATCGAGTTTTCAGAAATGTTCAAGCCGAGCGTC
AACTGTCGCCTTCCCCACGTGAACATCGACGTCCTCCGCGACGGCCTCTT
CAAGAGCAATGTGGTCGGCCGCACGGGGACCGGGAATGCCCAGCAGCTCC
TGGAGTGGGTGAAGGCCAAGAACGACTTGTTGGCGGCACGGGACGACGCG
GCCTGGCTGCGGGCCTACAAGGGGAGGAAGCCGGAGGCAGTTGAAAAGGC
GGTCTTGAAGGCGCGAGACAACCATTTCTTCTTAGGGATGGAGCCCAACT
GGATGGATGTGGAGTAGAAAGGGGGCGGGGGGGG

Coding sequence (CDS) from alignment at CM002459.1:720976..722359-

>rna2582 ID=rna2582|Name=rna2582|organism=Nannochloropsis gaditana|type=CDS|length=2148bp|location=Sequence derived from alignment at CM002459.1:720976..722359- (Nannochloropsis gaditana)
CCTGTGTCCATTATCGACATGCCCGATATGGCCGACGCCTCGGAGAAGGA
GATCATCACGCAGACCGCCGAACTCCTTCGGATCGAGTTTTCAGAAATGT
TCAAGCCGAGCGTCAACTGTCGCCTTCCCCACGTGAACATCGACGTCCTC
CGCGACGGCCTCTTCAAGAGCAATGTGGTCGGCCGCACGGGGACCGGGAA
TGCCCAGCAGCTCCTGGAGTGGGTGAAGGCCAAGAACGACTTGTTGGCGG
CACGGGACGACGCGGCCTGGCTGCGGGCCTACAAGGGGAGGAAGCCGGAG
GCAGTTGAAAAGGCGGTCTTGAAGGCGCGAGACAACCATTTCTTCTTAGG
GATGGAGCCCAACTGGATGGATGTGGAGTAGATGATGGCGCGTACATGCG
GTTACCAGCTCGTAGCCATGGTCATTTTTCTTCGGACTTGCGTGGCTTTC
GTGCCTCCCTCGTCCTCTCTGCCTCCATCTCCTACCCTCTTCTCCCGCTC
GACCCGGCTCTCGGTGGGAAATGTGAACGTGGACTTCTACCCCGGCCTAC
GAGGCCTGTTTGACATGGGCAACATTATTCTGGAAGAAGTGCGTGCAGGC
GGCAAAGAGGCCGAGCAGGAGATGGCTGAGATGGCGGGCTGGGTCAAAGA
TAAAGTAAGAGTGAAGCAGCAAGTGGTGCAGCAGAGCCCTGTGATCTTGC
ACCCTGTGTTTGGGGAGCTTGTGAAGGACCTCACCTACAAAAAAATCTAT
TGCACGAGTGTGCAAAAGCTTGCTTCCATCCCGATCTGGGAACAGCAGCG
CATTTACCGGGCGGAACGAGCGCAGCTTCTAGCGAACGACATCAAAGCCA
AGCTGCAGGAAGGGAAAGCGCTGACCTTGCCGGGGTCCTTGACCGTCTAC
GAGATGGGGGAGGAGATTGGACTGCTGGACGGACAGCACCGTCTGGGAGC
GCTGAAGCTCTTGATGGATTCGGGCGTGCTTATTCCCGAGGCGCACCTGA
TATTGGTAGAAGTCTTCCCTGTCAAAGCGCAAGAGGATGTAAAGCGCCTC
TTCACGGAGATCAACACCGCGCAGCCTGTGTCCATTATCGACATGCCCGA
TATGGCCGACGCCTCGGAGAAGGAGATCATCACGCAGACCGCCGAACTCC
TTCGGATCGAGTTTTCAGAAATGTTCAAGCCGAGCGTCAACTGTCGCCTT
CCCCACGTGAACATCGACGTCCTCCGCGACGGCCTCTTCAAGAGCAATGT
GGTCGGCCGCACGGGGACCGGGAATGCCCAGCAGCTCCTGGAGTGGGTGA
AGGCCAAGAACGACTTGTTGGCGGCACGGGACGACGCGGCCTGGCTGCGG
GCCTACAAGGGGAGGAAGCCGGAGGCAGTTGAAAAGGCGGTCTTGAAGGC
GCGAGACAACCATTTCTTCTTAGGGATGGAGCCCAACTGGATGGATGTGG
AGTAGATGATGGCGCGTACATGCGGTTACCAGCTCGTAGCCATGGTCATT
TTTCTTCGGACTTGCGTGGCTTTCGTGCCTCCCTCGTCCTCTCTGCCTCC
ATCTCCTACCCTCTTCTCCCGCTCGACCCGGCTCTCGGTGGGAAATGTGA
ACGTGGACTTCTACCCCGGCCTACGAGGCCTGTTTGACATGGGCAACATT
ATTCTGGAAGAAGTGCGTGCAGGCGGCAAAGAGGCCGAGCAGGAGATGGC
TGAGATGGCGGGCTGGGTCAAAGATAAAGTAAGAGTGAAGCAGCAAGTGG
TGCAGCAGAGCCCTGTGATCTTGCACCCTGTGTTTGGGGAGCTTGTGAAG
GACCTCACCTACAAAAAAATCTATTGCACGAGTGTGCAAAAGCTTGCTTC
CATCCCGATCTGGGAACAGCAGCGCATTTACCGGGCGGAACGAGCGCAGC
TTCTAGCGAACGACATCAAAGCCAAGCTGCAGGAAGGGAAAGCGCTGACC
TTGCCGGGGTCCTTGACCGTCTACGAGATGGGGGAGGAGATTGGACTGCT
GGACGGACAGCACCGTCTGGGAGCGCTGAAGCTCTTGATGGATTCGGGCG
TGCTTATTCCCGAGGCGCACCTGATATTGGTAGAAGTCTTCCCTGTCAAA
GCGCAAGAGGATGTAAAGCGCCTCTTCACGGAGATCAACACCGCGCAG

Synonyms

Publications