EWM28085.1, cds2574 (CDS) Nannochloropsis gaditana

Overview
NameEWM28085.1
Unique Namecds2574
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:721493..722185 -
Alignment locationCM002459.1:720993..721373 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28085.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100120g24.6946.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:721493..722185 -
CM002459.1supercontigCM002459.1:720993..721373 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28085.1 vs. NCBI_GenBank
Match: gi|585110428|gb|EWM28085.1| (hypothetical protein Naga_100120g24 [Nannochloropsis gaditana])

HSP 1 Score: 737.258 bits (1902), Expect = 0.000e+0
Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 0
Query:    1 MMARTCGYQLVAMVIFLRTCVAFVPPSSSLPPSPTLFSRSTRLSVGNVNVDFYPGLRGLFDMGNIILEEVRAGGKEAEQEMAEMAGWVKDKVRVKQQVVQQSPVILHPVFGELVKDLTYKKIYCTSVQKLASIPIWEQQRIYRAERAQLLANDIKAKLQEGKALTLPGSLTVYEMGEEIGLLDGQHRLGALKLLMDSGVLIPEAHLILVEVFPVKAQEDVKRLFTEINTAQPVSIIDMPDMADASEKEIITQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGNAQQLLEWVKAKNDLLAARDDAAWLRAYKGRKPEAVEKAVLKARDNHFFLGMEPNWMDVE 357
            MMARTCGYQLVAMVIFLRTCVAFVPPSSSLPPSPTLFSRSTRLSVGNVNVDFYPGLRGLFDMGNIILEEVRAGGKEAEQEMAEMAGWVKDKVRVKQQVVQQSPVILHPVFGELVKDLTYKKIYCTSVQKLASIPIWEQQRIYRAERAQLLANDIKAKLQEGKALTLPGSLTVYEMGEEIGLLDGQHRLGALKLLMDSGVLIPEAHLILVEVFPVKAQEDVKRLFTEINTAQPVSIIDMPDMADASEKEIITQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGNAQQLLEWVKAKNDLLAARDDAAWLRAYKGRKPEAVEKAVLKARDNHFFLGMEPNWMDVE
Sbjct:    1 MMARTCGYQLVAMVIFLRTCVAFVPPSSSLPPSPTLFSRSTRLSVGNVNVDFYPGLRGLFDMGNIILEEVRAGGKEAEQEMAEMAGWVKDKVRVKQQVVQQSPVILHPVFGELVKDLTYKKIYCTSVQKLASIPIWEQQRIYRAERAQLLANDIKAKLQEGKALTLPGSLTVYEMGEEIGLLDGQHRLGALKLLMDSGVLIPEAHLILVEVFPVKAQEDVKRLFTEINTAQPVSIIDMPDMADASEKEIITQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGNAQQLLEWVKAKNDLLAARDDAAWLRAYKGRKPEAVEKAVLKARDNHFFLGMEPNWMDVE 357          
BLAST of EWM28085.1 vs. NCBI_GenBank
Match: gi|585108810|gb|EWM26722.1| (hypothetical protein Naga_100001g144 [Nannochloropsis gaditana])

HSP 1 Score: 228.794 bits (582), Expect = 1.038e-68
Identity = 115/288 (39.93%), Postives = 184/288 (63.89%), Query Frame = 0
Query:   76 EAEQEMAEMAGWVKDKVRVKQQVVQQSPV----ILHPVFGELVKDLTYKKIYCTSVQKLASIPIWEQQRIYRAERAQLLANDIKAKLQEGKALTLPGSLTVYEMGE-EIGLLDGQHRLGALKLLMDSGVLIPEAHLILVEVFPVKAQEDVKRLFTEINTAQPVSIIDMPDM-ADASEKEIITQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGNAQQLLEWVKAKNDLLAARDDAAWLRAYKGRKPEAVEKAVLKARDNHFFLGMEPNWMDVE 357
            E E   A     +++  R+++++  Q+ +      HPV G+L+ D+ YKK+YC ++ +LA +PIWE+QRI R ERA+ +A +   K+++   + LPG +T+Y++ + +  LLDGQHRL ALK+L DSG++  + +  L+EVF ++ + + + LF EIN+A PV +ID+PD  A    K II    + L  +F   FK S+N +LPHVNID +RD LF+ ++V R G  +A +LL+W++  N+ L+ + D  W R +KGR P  +EKAV KA+   F+LG++  W+  E
Sbjct:   79 EVETAKASHVSALQEVERLRERITFQTKIKPEDSSHPVLGQLIADMGYKKVYCATINQLADVPIWEKQRILRRERAESIARE---KMRQSFPVKLPGIITLYQLADKQYKLLDGQHRLAALKILADSGIISKDNNFCLLEVFTLEKESEARALFLEINSAMPVKLIDLPDGGARPDIKGIIDGAVDNLVSQFPAFFKSSLNPKLPHVNIDNMRDALFQHHIVERHGHKSAVELLKWLQDANENLSTKHDRDWKRIFKGRNPLVIEKAVAKAKKGGFYLGLDNRWLAFE 363          
BLAST of EWM28085.1 vs. NCBI_GenBank
Match: gi|857970971|emb|CEP02832.1| (hypothetical protein PBRA_002799 [Plasmodiophora brassicae])

HSP 1 Score: 181.415 bits (459), Expect = 3.122e-51
Identity = 98/265 (36.98%), Postives = 160/265 (60.38%), Query Frame = 0
Query:   98 VVQQSPVILHPVFGELVKDLTYKKIYCTSVQKLASIPIWEQQRIYRAERAQLLANDIKAKLQEGKALTLPGSLTVYEMGE-----EIGLLDGQHRLGALKLLMDSGVLIPEAHLILVEVFPVKAQEDVKRLFTEINTAQPVSIIDMPDM-ADASEKEIITQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGN-AQQLLEWVKAKNDLLAARDDAAWLRAYKGRKPEAVEKAVLKARDNHFFLGMEPNWMD 355
            V  Q+P   HPV G++ +D+TYK+++ TS+  L  IP+W +QR    ERA  ++  +K + +      LPG +T++E        E+G++DGQHRL A++LL+  G        I V++F V    D+  LF++IN A+PV ++D+P+  AD + KE + +  E +R +F  MF+PS  CR PH+N+DVLRD +++S+++ +    N +Q LL+     N  +  R DA W +A  G K  A +KA+ KARDN  +L ++ +W++
Sbjct:   39 VADQTPA--HPVLGDVARDVTYKRVFFTSISALQGIPVWNRQRTLSQERAVEISQHLKQRPR------LPGVITLFEKVSSKGVPELGVVDGQHRLAAVQLLVRQGAWDAHNANIAVDLFRVGDDNDIADLFSDINRAEPVLLVDLPESGADDTTKEKLNRAIEQIRAKFPTMFRPSQQCRPPHLNVDVLRDEIWQSDLLDKVPVDNLSQYLLD----ANHAMHERTDAQWRKALSG-KSRAFKKALTKARDNACYLALDKSWLN 290          
BLAST of EWM28085.1 vs. NCBI_GenBank
Match: gi|922862534|gb|KOO30123.1| (hypothetical protein Ctob_012497 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 181.415 bits (459), Expect = 1.707e-49
Identity = 111/267 (41.57%), Postives = 145/267 (54.31%), Query Frame = 0
Query:  107 HPVFGELVKDLTYKKIYCTSVQKL-ASIPIWEQQRIYRAERAQLLANDIKAKLQEGKALTLPGSLTVYEM---------------GEEIG-LLDGQHRLGALKLLMDSGVLIPEAHLILVEVFPVKAQEDVKRLFTEINTAQPVSIIDMPDM-ADASEKEIITQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGNAQQLLEWVKAKNDLLAARDDAAWLRAYKGRKPE-AVEKAVLKARDNHFFLGMEPNWM 354
            HPVFGEL+ D  YK++Y  S   L A   +WE+QR +R ERA L+A         G     PG++ V E                G  IG L+DGQHRLGA  LL   G L      ILVEV+P   ++ VK LFTEIN A+PV ++D+P+  A   +  I+T  AE L   +  MFKPS  CR PH+N+DVLR  L ++ V+ R    +A +LL+WV   N  L AR D  W       K E A+  A+ KAR N F+LGM  +W+
Sbjct:  181 HPVFGELIADFGYKRLYRGSPTTLWAGTMLWERQRAFRQERANLIAAAKAKSKATG----WPGAIAVVERSSSGSEASAPTGHGGGTAIGTLIDGQHRLGAAHLLAQRGKLDGALASILVEVYPPMEEQGVKDLFTEINRAEPVLLVDLPEGGASDQDNAILTAAAEELAQRYPAMFKPSHGCRPPHLNVDVLRAELHRAEVLSRHKLASAAELLDWVDKANRDLGARSDEQWASTGARAKSETALGNALSKARQNAFYLGMGWDWL 443          
BLAST of EWM28085.1 vs. NCBI_GenBank
Match: gi|551643833|ref|XP_005824709.1| (hypothetical protein GUITHDRAFT_154866 [Guillardia theta CCMP2712] >gi|428168789|gb|EKX37729.1| hypothetical protein GUITHDRAFT_154866 [Guillardia theta CCMP2712])

HSP 1 Score: 175.637 bits (444), Expect = 8.830e-48
Identity = 109/263 (41.44%), Postives = 151/263 (57.41%), Query Frame = 0
Query:  107 HPVFGELVKDLTYKKIYCTSVQKL-ASIPIWEQQRIYRAERAQLLANDIKAKLQEGKALTLPGSLTVYEM---GEEIGLLDGQHRLGALKLL---MDSGVLIPEAHL------ILVEVFPVKAQEDVKRLFTEINTAQPVSIIDMPDM-ADASEKEIITQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGNAQQLLEWVKAKNDLLAARDDAAWLRAYKGRKPEAVEKAVLKARDNHFFLGMEPNWMD 355
            HP+FG  + D  YKK++     KL  S PI+++QR +R ERA  +A   KAK         PG+++V E    G+ + L+DGQHRLGA  LL   M S    P+  L      ILVEV+P   +     +FTEIN A+P  ++D+P        K+II   +E LR  +S MFKPS  CR PH+NID LRD LF++NVV R G    + LL W+ AKND LAA     W R  +  + + +EKA+ KA   +F+LG+E +W++
Sbjct:  122 HPIFGRFLADFGYKKVFAADPSKLYTSTPIYKKQRTFRTERASSIAR-AKAK---SSVTGWPGTISVVEYTGKGQAV-LVDGQHRLGAHTLLARQMKSQN--PDRPLPLGMTEILVEVYPADNENMAAEVFTEINKAEPCKLVDLPQAKVPVQTKKIIDGASEKLRQRYSAMFKPSSACRTPHMNIDNLRDELFQANVVARYGFKTEEDLLNWMLAKNDELAAIPRGEW-RPKRRTRAKTLEKALEKAVAQNFYLGLEWDWLN 376          
BLAST of EWM28085.1 vs. NCBI_GenBank
Match: gi|1072224731|gb|OEU09480.1| (hypothetical protein FRACYDRAFT_248332 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 176.407 bits (446), Expect = 1.061e-47
Identity = 96/255 (37.65%), Postives = 151/255 (59.22%), Query Frame = 0
Query:  107 HPVFGELVKDLTYKKIYCTSVQKLASIPIWEQQRIYRAERAQLLANDIKAKLQEGKALTLPGSLTVYE-MGEEIGLLDGQHRLGALKLLMDSGVLIPEAHL--ILVEVFPVKAQED----VKRLFTEINTAQPVSIIDMPDMADASEKEIITQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGNAQQLLEWVKAKNDLLAARDDAAWLRAYKGRKPEAVEKAVLKARDNHFFLGMEPNWM 354
            HP+ G+ + +L YK+I+  S++ LA+IP+WE+QRI+R  R + +A D    L     L LPG + ++E +   + ++DGQHR+G LK+L ++ V   +     ILVEV+P    E      K LF E+N A+PV ++D+P + +AS+K+II + A+ L+  F EMF  S  CR PH+NID LRD LF+SN++ + G   ++ + +W+  +NDLL  +      R          E A+ KA    F+LG+E  W+
Sbjct:  199 HPILGKCISELGYKRIHLASLKNLATIPVWEKQRIFRLARTKKMATDKMKTLH----LGLPGIIGIFENIDGSLNIVDGQHRVGMLKVL-ETKVTSDDFDFDNILVEVYPALKDEHEETHAKDLFLEVNKAEPVKLVDLPGVGNASDKKIINEVADRLQDSFPEMFSDSQRCRAPHLNIDNLRDALFQSNIIRKHGHKTSKAVEDWILEQNDLLEVKYQVEENREL------VKETALKKAEQFRFYLGLESYWL 442          
BLAST of EWM28085.1 vs. NCBI_GenBank
Match: gi|255082358|ref|XP_002504165.1| (predicted protein [Micromonas commoda] >gi|226519433|gb|ACO65423.1| predicted protein [Micromonas commoda])

HSP 1 Score: 178.333 bits (451), Expect = 1.290e-47
Identity = 105/287 (36.59%), Postives = 160/287 (55.75%), Query Frame = 0
Query:  101 QSPVILHPVFGELVKDLTYKKIYCTSVQKLA---SIPIWEQQRIYRAERAQLLANDIKAK-----------LQEGKALT-----------LPGSLTVYEMGEEIGLLDGQHRLGALKLLMDSGVLIPEAHLILVEVFPVKAQEDVKRLFTEINTAQPVSIIDMPDMADASEKEIITQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGNAQQLLEWVKAKNDLLAARDDAAWLRAY--KGRKPEAVE----KAVLKARDNHFFLGMEPNWMDV 356
            +  V  H ++G +++D  YKKIY    + L     + I++QQR +RAERAQ++A + KAK           L EG A             L GS +    G  I  LDGQHR+GAL++L+  GV+ P+ H +LVEVF          +FTEIN AQP+  +DMP +A A  K ++   A+ ++  +  MF  S  C++P++N+DVLR+ LF + VV R G  +    + W++++N  LA R +  WL A   +GR     E    KA+ KA+++ F+LGM+ +W+DV
Sbjct:  260 EKKVASHELYGTMLRDFGYKKIYAMPAKNLVCKDKVGIYDQQRAFRAERAQVIAAE-KAKEAVFSLPGVVTLAEGTAAVRGKKTKKKSSLLFGSSSANNTGAHI--LDGQHRVGALEILLSQGVIAPD-HTVLVEVFENVDDARASEIFTEINAAQPIRFVDMPGVAPADVKWMLEGAAQRIKERYRAMFSASERCKIPNINLDVLREELFSAEVVTRFGIADEDAFVAWLESENAKLAQRTEKEWLEARPKRGRGSTGSEETYLKALAKAKEHGFYLGMDFSWLDV 542          
BLAST of EWM28085.1 vs. NCBI_GenBank
Match: gi|1210524228|dbj|GAX16957.1| (hypothetical protein FisN_5Hh335 [Fistulifera solaris])

HSP 1 Score: 172.555 bits (436), Expect = 2.269e-46
Identity = 99/269 (36.80%), Postives = 160/269 (59.48%), Query Frame = 0
Query:   89 KDKVRVKQQVVQQSPVILHPVFGELVKDLTYKKIYCTSVQKLASIPIWEQQRIYRAERAQLLANDIKAKLQEGKALTLPGSLTVYEMGE-EIGLLDGQHRLGALKLLMDSGVLIPEAHLILVEVFPVKAQ---EDVKRLFTEINTAQPVSIIDMPDMADASEKEIITQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGNAQQLLEWVKAKNDLLAARDDAAWLRAYKGRKPEAVEKAVLKARDNHFFLGMEPNW 353
            KD+ + + Q  Q+     HP+ G     L YK ++  S + LA IP+WE+QRIYR +RA+ +A D   KL+  K L +PG +T+YE  + ++ ++DGQHR+G + LL +  V   +   +LVEV+   A+   +  K +F EIN A+PV ++DMP +A A ++ II + A+LL   +  MF PS  CR+P++NID LRD LF +NV+ R     A  L  W+  +N ++ A+      ++ + +K  +V  A+ KA  + F+LG++ +W
Sbjct:  170 KDETQEETQSKQE-----HPILGMAHASLGYKSVHLVSAKDLADIPVWEKQRIYRHDRAKAMAQD---KLKTMK-LGMPGVITLYEDRDGKLSIIDGQHRVGMMSLLNEQSVEGLDLDNVLVEVYKELAEYGEDHAKDIFLEINKAEPVKLLDMPGVATAKDRTIINRGAQLLMERYPSMFSPSQKCRVPNLNIDNLRDALFAANVIKRHSLTTASALEAWLLEQNAIMEAK-----YQSDEAKKTVSV-SALAKAETHSFYLGLDSSW 423          
BLAST of EWM28085.1 vs. NCBI_GenBank
Match: gi|1210515730|dbj|GAX25253.1| (hypothetical protein FisN_5Lh335 [Fistulifera solaris])

HSP 1 Score: 172.555 bits (436), Expect = 2.890e-46
Identity = 95/251 (37.85%), Postives = 152/251 (60.56%), Query Frame = 0
Query:  107 HPVFGELVKDLTYKKIYCTSVQKLASIPIWEQQRIYRAERAQLLANDIKAKLQEGKALTLPGSLTVYEMGE-EIGLLDGQHRLGALKLLMDSGVLIPEAHLILVEVF---PVKAQEDVKRLFTEINTAQPVSIIDMPDMADASEKEIITQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGNAQQLLEWVKAKNDLLAARDDAAWLRAYKGRKPEAVEKAVLKARDNHFFLGMEPNW 353
            HPV G     L YK ++  S + LA IP+WE+QRIYR +RA+ +A D   K++  K L +PG +T+YE  + ++ ++DGQHR+G + LL +  V   +   +LVEV+   P   ++  K +F EIN A+PV ++DMP +A A ++ II + A+LL   F  MF PS  CR+P++NID LRD LF +NV+ R    +A  L  W+  +N  +  +      ++ + +K  +V  A+ KA+ + F+LG++ +W
Sbjct:  187 HPVLGMAYASLGYKSVHLVSAKDLADIPVWEKQRIYRHDRAKSMAQD---KMKTMK-LGMPGVITLYEDRDGKLSIIDGQHRVGMMSLLNEQSVEGLDLDSVLVEVYKELPEYGEDHAKDIFLEINKAEPVKLLDMPGVATAKDRTIINRGAQLLMERFPSMFSPSQKCRVPNLNIDNLRDALFAANVIKRHSLTSAPALEAWLLEQNAKMEVK-----YQSDEAKKTVSV-AALTKAKTHSFYLGLDSSW 427          
BLAST of EWM28085.1 vs. NCBI_GenBank
Match: gi|551654516|ref|XP_005830034.1| (hypothetical protein GUITHDRAFT_111100 [Guillardia theta CCMP2712] >gi|428174156|gb|EKX43054.1| hypothetical protein GUITHDRAFT_111100 [Guillardia theta CCMP2712])

HSP 1 Score: 168.703 bits (426), Expect = 9.494e-46
Identity = 99/259 (38.22%), Postives = 156/259 (60.23%), Query Frame = 0
Query:  107 HPVFGELVKDLTYKKIYCTS-VQKLASIPIWEQQRIYRAERAQLLANDIKAKLQEGKALTLPGSLTVYEMGE------EIGLLDGQHRLGALKLLMDSGVLIPE-AHLILVEVFPVKAQEDVKRLFTEINTAQPVSIIDMP--DM-ADASEKEIITQTAELLRIEFSEMFKPSVNCRLPHVNIDVLRDGLFKSNVVGRTGTGNAQQLLEWVKAKNDLLAARDDAAWLRAYKGRKPEAVEKAVLKARDNHFFLGMEPNWM 354
            H ++G+L+ DL YKKIYC + V  LA   IW++QR +R  RA+ +AN       +G     PG++++ E+ +      E  ++DGQHRL A  +L+ S    PE A  ++VEV+P    ++   LF EIN A+P+  +D+P  D+ A A+ + I++  AE L+    EMFK S NCR+PH+NID LRD L ++ V+   G  + + LL+W++ +N  LA +DD  W + ++G   +   KA+ KAR ++FFLG+   W+
Sbjct:   86 HEIYGQLMVDLGYKKIYCANPVTLLAQAKIWKKQRAFRQHRAESIANSKMKSSVKG----WPGTISIAEIKDPENSEKECFIVDGQHRLAAC-MLLSSKENAPEGADKVIVEVYPDMQDQNTTDLFVEINKAEPILHVDIPIADVGASATHQAILSGAAERLQKMNPEMFKESQNCRIPHMNIDRLRDELHQAGVIDENGLKSDEDLLKWLEERNKELAQKDDHYW-KEFEGNATKM--KALEKARKHNFFLGLNWQWL 336          
The following BLAST results are available for this feature:
BLAST of EWM28085.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110428|gb|EWM28085.1|0.000e+0100.00hypothetical protein Naga_100120g24 [Nannochlorops... [more]
gi|585108810|gb|EWM26722.1|1.038e-6839.93hypothetical protein Naga_100001g144 [Nannochlorop... [more]
gi|857970971|emb|CEP02832.1|3.122e-5136.98hypothetical protein PBRA_002799 [Plasmodiophora b... [more]
gi|922862534|gb|KOO30123.1|1.707e-4941.57hypothetical protein Ctob_012497 [Chrysochromulina... [more]
gi|551643833|ref|XP_005824709.1|8.830e-4841.44hypothetical protein GUITHDRAFT_154866 [Guillardia... [more]
gi|1072224731|gb|OEU09480.1|1.061e-4737.65hypothetical protein FRACYDRAFT_248332 [Fragilario... [more]
gi|255082358|ref|XP_002504165.1|1.290e-4736.59predicted protein [Micromonas commoda] >gi|2265194... [more]
gi|1210524228|dbj|GAX16957.1|2.269e-4636.80hypothetical protein FisN_5Hh335 [Fistulifera sola... [more]
gi|1210515730|dbj|GAX25253.1|2.890e-4637.85hypothetical protein FisN_5Lh335 [Fistulifera sola... [more]
gi|551654516|ref|XP_005830034.1|9.494e-4638.22hypothetical protein GUITHDRAFT_111100 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2582rna2582Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications