rna2574, rna2574 (mRNA) Nannochloropsis gaditana

Overview
Namerna2574
Unique Namerna2574
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2693
Alignment locationCM002459.1:698254..699431 -

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Properties
Property NameValue
Product30s ribosomal protein s9
Orig transcript idgnl|cribi|Naga_100036g8.2535.mrna
Orig protein idgnl|cribi|Naga_100036g8.2535
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:698254..699431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100036g8gene2461Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2574rna2574-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28115.1cds2566Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2574 ID=rna2574|Name=rna2574|organism=Nannochloropsis gaditana|type=mRNA|length=2693bp
CTCACATTCTTGCCCTTTCGCGCCGCTCGTCCCTCTTAATCTGTCCAGTC
GCACGATATCGTTCAAATTGCGAATTCCGTCGTCTCTTGTCTACCTCCCC
GATTTCAGATGGAAACCAGCCCTGGGGGTGCCAGTGCTGTCTTCCCTCCA
CTCTCATCTACACTTGAGGAAAGTGGACCTGAAAATGTTACAGGTGGGGA
GTCGATTCTACCTCCTACGTCATGCCCCCACGTGTTGCCGCCACATGGAA
GTTTTCCTTCCTCAGGCCAAGCATCCTCCCACTCCTCTTCGACCACACTT
CCACATCGCTGCGTCCTGGAGGACTTTACAAGGTGCAGCGAAAGTCACCT
GTGGAAGCTCATGATGTCTTTCTACGATCGAAAAGGTGTCGAATCCTGGT
CGCAGGGGATCGTGCCACACTTCATTACATGTAACGCTTTTATCGGGAGG
GCGTACGCCCAAGTCTTTCAAGGTTACTTGCGAGACTGTGCCAAGAAGGC
TCGTGAAAATGGACCCGTATGTTCGGCATTGGATCCTTCAGAGCCATTGT
ATATTATAGAGCTGGGCGCTGGCTCCGGAAAATTCAGCTTTTTTATGCTC
AAAGCCCTGGAAGAGATGCGGGAGCTGCTGGATTTTCCCTTCGAGAAAAT
TGTGTACGTCATGACGGACTTCACCAAGAACCATTTCAACTTCTGGGAGA
CGCATCCTGGACTGCACAAGTATATAGCGCAAGGCTCGCTGGACCTGGCC
ATCTTCGACGCGGTGCACGACTCCGTGATACGCCTCAGCCACGCGGGCAC
TGTCTTGGCCCCGGGCTCAGTCAAGAATCCCATGTGTCTGATCGCAAACT
ACTTGTTCGACACGCTTTGCCACGACGTCTTCCAGGTTGACGGTGGCGTA
CTCAAAGAGGGGTTGATATCGGTGGGGTCCAAGCAGGCGCAGGAGCCAGA
CCCCCTGGATCCCGAGATCATCAAACGTTTCCACAACCTCTTCCAGTACC
AGCCCGTGACTCCGGACTACTACGCGCACACGCACCAACCGGCCCACCGT
CCGGGACATGCCCCAATGGGCTCTCCCCCATCCTCGAGCGAGCCCTTGAG
CGCTGGGACGAACGGGTCCTCGGACCGGGAAGACTCTCTGCACCTGGGCC
GGATCCTACACTGGTACCGCGATTACTTCGGGCGTAGCAGTACGGGCGGG
TCCTTCCTCTTTCCCATCGGGGCCCTCCGCGCCCTCCGGCGCCTCCTCGC
CTTCAGCAATGACAGGGGCTTGGTCATTTCGGGCGACAAGGGCAGCAACC
AGGCGGAGCAGTTCCGAGGCCTGGTCGACCCGCACATCGCTGTCCACGGA
TCCTTCTCGGTCATGGTCAACTACCACGCCATCGGCCTCTACTTCATCAG
CCGGGGGGGCTTCGCTCTCCACAATCCCCAGGAAGACGCCTCTTTGAAAG
TCTCGGCCTTCGTACTCAGCGGCCGCGCCGGCCCTCCGGAAAGCCCGTCA
GAGGATTCCCCCCCTGAAGCTCACTCCCCCGTGACCACCACCACCTCCTG
CCTCGACACCTCCCCGTCCTCCTGGGCCGGCCCCAACGCGGAGTCGGAGG
GCGAGAAGCGGGTGCGGGCCTTTCCCTGCCTGCGCGCCGCCTTCTCGACC
GCCGTGGATCAGTTCGGCCCCAACGATTTCTTCGTCCTGCAGAAGAGCAT
GAAGGAGGACTCCCCGAACCCCACGCTCAAGGCGATAGTCGCCCTTCTGA
AGCTAGGGGACTGGGACCCGGACGTCTTCTACAAGTTTCGCGAGACCATC
CTCAATCAAGTCCCCACCGCTGGCCAGAAGCTGCGGAACGACCTGTGCCG
AGGCGTGCCCCGGGTGTGGGAGCACCACTACATGCTCGATCGGGACAAGG
ACATCGCCTTCGAGATCGGCAGATTCTACTACGGAATCCGGGAATACGAA
CGGGCCTTGGGCTTCTACAGCCTCTCCTCCACCTCGATTGGGGAGCACCA
CGTGACCTGCCACAATATGGGCCTCTGTCACTACTCTCTGGGCCGCCTCC
AGCAGGCGCTTGAGCACTTCGAGCGCTCCCTGGCCCTGAACGCCTCCTAC
GAGAAGGCCTGGTCGTGGCAGCAGAAAGTCCTGCAGGAGCTGAACCCTTC
CCCGTCGCCCTCCCCTGGCCCTGTTGTCCACGAGACTCGATGCTTGGATT
TTCCGGAAGTAGGGAATCTGTCCCTGGCAGCGCGGAGGGGGGGGGATCGT
CGCCCCTGAGGGTCTGATGGAGAAGCCGCGTAAGGCAAGTTTGCGAAAGT
GGGATGGGTCAGGGAGAGAAACGCTCGAGAGTGGTGTATTGTAGACCGAA
GCCGCCGCGACGAGCGCTACTCGCGATCAAGGGACATGGTCGTTGTGGCA
CCTAGACTGTCAGGATTGCCAGGCTCACGGGGGCTGGATGGGTGGGGGCT
AAGCAAAGGGTGGATAGACGTTGGTGTGGAAATGAAACTACTCCATCTGC
TGGTAGAAGCGAAGGACAACAAAGGCAAAGCTGTGTATAAAATGACGACG
CCAAGAAATGAGCCACTAGAGACACCCGGAAAGTAAAATGCACAGGGACG
AGACGTCCAAGCACGACGGGGGGCGTCAGCTTTTTCGCGCGCTCGTGATT
TCCTTCTTCTTAAATCCCAGCATACTCGACAGTATCGAACACC
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protein sequence of rna2574

>rna2574-protein ID=rna2574-protein|Name=rna2574|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MPLCSTQNRLNMLPTVHSNVSKLSSISRSTALRVLVTNTGTATMACARRF
STSTPLAAEGDDPSAAVNDAHASPPPLNPRLDSLNRAYATGRRKTSVARV
WLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKG
GGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQP
KARKKDQWVKR
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mRNA from alignment at CM002459.1:698254..699431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2574 ID=rna2574|Name=rna2574|organism=Nannochloropsis gaditana|type=mRNA|length=1178bp|location=Sequence derived from alignment at CM002459.1:698254..699431- (Nannochloropsis gaditana)
TATCAAGCAGACGACCTTGACGTGGAGTGAACTCAATGTTGGAGGGAAAA
CAAATTTCAACACGCGCCAAAGAGGATACGAACCGCGCGCGCCGGCGTCC
GGGAATGCCGGCTTTCTCTCACGTTCGGGCGTGCGGCCGCTCTTGTCCCG
TTGACTAGCCAGGCAGGCGAAGGGATTGGTGCTGAAATGTCATTGCCTTT
GGACAGCACCCCGTTGCCTTTCATGATTTATTTTGGAAACCAATTCTTTG
GGTTGGCACGAGCGTTCACAGATCCGTTGGTGTGCGCCGTCTAGATTTGC
CCTTGTTCGACCCGCAGTGTCTTTGTAAGTGTGTTAGGGCTCATTCGTTC
CCTCTCCCGTATGCCTCTTTGCTCGACTCAGAACAGATTAAACATGCTAC
CGACGGTACATTCCAACGTTTCTAAGCTGTCGAGCATTTCTAGGAGTACC
GCCCTAAGGGTTTTAGTGGTAAGTGGTATGGCGGAAAGGGTACGCACATG
TCTGGGTCTGGTTTATTTGGACAATCTTTGTTTTTTACTACACCCTGCTT
TTCCCGGTATAGACGAACACAGGTACGGCGACGATGGCATGCGCTCGTCG
CTTCTCCACATCGACGCCTCTGGCAGCAGAAGGCGATGATCCATCTGCTG
CAGTCAATGATGCCCACGCATCCCCCCCGCCTCTAAATCCACGCTTGGAT
AGTCTAAATAGGGCCTACGCAACAGGGAGGCGCAAGACAAGTGTGGCTCG
TGTGTGGCTTCTAGCGGGAGACGGTCGAATCGTGGTGAATGGGAAAGAAG
TCCATGAATACTTTGGGCGGACGGCGTACAGGGACAAGCTGATTGAGCCG
TTCGTGGTGACGGAGAGCGTCGGCCAATTCGACGTCAAGTGCACTGTGAA
AGGGGGGGGCACCACCGGGCAGGTAGGCGCCATTTCGTTGGGGATATCGC
GAGCCCTCGAAGTATGGGACCCGGCGCACCGGCCCCCTTTGGCCAAGGAG
AGTCTGTTTACGCGGGACTCGCGGGCGGTCGAGTCCAAAAAATCCGGTCA
GCCCAAGGCCAGGAAGAAGGATCAGTGGGTCAAACGCTAAGCGAGAGACG
TCTAAAAGCAGGTGTTCGATACTGTCGAGTATGCTGGGATTTAAGAAGAA
GGAAATCACGAGCGCGCGAAAAAGCTGA
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Coding sequence (CDS) from alignment at CM002459.1:698254..699431-

>rna2574 ID=rna2574|Name=rna2574|organism=Nannochloropsis gaditana|type=CDS|length=1272bp|location=Sequence derived from alignment at CM002459.1:698254..699431- (Nannochloropsis gaditana)
ACGAACACAGGTACGGCGACGATGGCATGCGCTCGTCGCTTCTCCACATC
GACGCCTCTGGCAGCAGAAGGCGATGATCCATCTGCTGCAGTCAATGATG
CCCACGCATCCCCCCCGCCTCTAAATCCACGCTTGGATAGTCTAAATAGG
GCCTACGCAACAGGGAGGCGCAAGACAAGTGTGGCTCGTGTGTGGCTTCT
AGCGGGAGACGGTCGAATCGTGGTGAATGGGAAAGAAGTCCATGAATACT
TTGGGCGGACGGCGTACAGGGACAAGCTGATTGAGCCGTTCGTGGTGACG
GAGAGCGTCGGCCAATTCGACGTCAAGTGCACTGTGAAAGGGGGGGGCAC
CACCGGGCAGGTAGGCGCCATTTCGTTGGGGATATCGCGAGCCCTCGAAG
TATGGGACCCGGCGCACCGGCCCCCTTTGGCCAAGGAGAGTCTGTTTACG
CGGGACTCGCGGGCGGTCGAGTCCAAAAAATCCGGTCAGCCCAAGGCCAG
GAAGAAGGATCAGTGGGTCAAACGCTAAATGCCTCTTTGCTCGACTCAGA
ACAGATTAAACATGCTACCGACGGTACATTCCAACGTTTCTAAGCTGTCG
AGCATTTCTAGGAGTACCGCCCTAAGGGTTTTAGTGACGAACACAGGTAC
GGCGACGATGGCATGCGCTCGTCGCTTCTCCACATCGACGCCTCTGGCAG
CAGAAGGCGATGATCCATCTGCTGCAGTCAATGATGCCCACGCATCCCCC
CCGCCTCTAAATCCACGCTTGGATAGTCTAAATAGGGCCTACGCAACAGG
GAGGCGCAAGACAAGTGTGGCTCGTGTGTGGCTTCTAGCGGGAGACGGTC
GAATCGTGGTGAATGGGAAAGAAGTCCATGAATACTTTGGGCGGACGGCG
TACAGGGACAAGCTGATTGAGCCGTTCGTGGTGACGGAGAGCGTCGGCCA
ATTCGACGTCAAGTGCACTGTGAAAGGGGGGGGCACCACCGGGCAGGTAG
GCGCCATTTCGTTGGGGATATCGCGAGCCCTCGAAGTATGGGACCCGGCG
CACCGGCCCCCTTTGGCCAAGGAGAGTCTGTTTACGCGGGACTCGCGGGC
GGTCGAGTCCAAAAAATCCGGTCAGCCCAAGGCCAGGAAGAAGGATCAGT
GGGTCAAACGCTAAATGCCTCTTTGCTCGACTCAGAACAGATTAAACATG
CTACCGACGGTACATTCCAACGTTTCTAAGCTGTCGAGCATTTCTAGGAG
TACCGCCCTAAGGGTTTTAGTG
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Synonyms
Publications