EWM28115.1, cds2566 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|585110459|gb|EWM28115.1| (30s ribosomal protein s9 [Nannochloropsis gaditana]) HSP 1 Score: 434.106 bits (1115), Expect = 5.234e-154 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query: 1 MPLCSTQNRLNMLPTVHSNVSKLSSISRSTALRVLVTNTGTATMACARRFSTSTPLAAEGDDPSAAVNDAHASPPPLNPRLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
MPLCSTQNRLNMLPTVHSNVSKLSSISRSTALRVLVTNTGTATMACARRFSTSTPLAAEGDDPSAAVNDAHASPPPLNPRLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR
Sbjct: 1 MPLCSTQNRLNMLPTVHSNVSKLSSISRSTALRVLVTNTGTATMACARRFSTSTPLAAEGDDPSAAVNDAHASPPPLNPRLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|1088442766|gb|OHC79579.1| (30S ribosomal protein S9 [Rhodospirillales bacterium RIFCSPLOWO2_01_FULL_65_14]) HSP 1 Score: 160.229 bits (404), Expect = 1.365e-46 Identity = 77/142 (54.23%), Postives = 98/142 (69.01%), Query Frame = 0
Query: 70 AHASPPPLNPRLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
A A+P PR+D L R+YATG+RK +VARVW+ G GRIVVNG++ +YF R R + +PF VT+ GQ+DV+CTV GGG +GQ GA+ GISRAL ++P RP L KE TRDSR VE KK G+ KAR+ Q+ KR
Sbjct: 16 AEAAPAQPEPRIDELKRSYATGKRKNAVARVWIKPGPGRIVVNGRDSEKYFARPVLRMMINQPFAVTDRQGQYDVQCTVSGGGLSGQAGAVRHGISRALTFYEPGLRPALKKEGFLTRDSRVVERKKYGRRKARRSFQFSKR 157
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|1109262811|ref|XP_019155536.1| (PREDICTED: 37S ribosomal protein S9, mitochondrial [Ipomoea nil]) HSP 1 Score: 163.31 bits (412), Expect = 4.725e-45 Identity = 78/132 (59.09%), Postives = 94/132 (71.21%), Query Frame = 0
Query: 80 RLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
++D R+Y TGRRK S+ARVW+ GDG+ VVN KE YF +R L+ PF T+++G +DVKCTVKGGG +GQVGAI LG+SRAL+ WDP RPPL K TRDSR VE KK G+ KARK QWVKR
Sbjct: 267 QVDEKGRSYGTGRRKCSIARVWIEPGDGKFVVNDKEFDVYFPMLDHRANLLRPFSETKTLGMWDVKCTVKGGGVSGQVGAIQLGVSRALQKWDPELRPPLRKGGFLTRDSRVVERKKPGRAKARKSFQWVKR 398
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|676397765|ref|XP_009042160.1| (hypothetical protein AURANDRAFT_59675 [Aureococcus anophagefferens] >gi|323447203|gb|EGB03140.1| hypothetical protein AURANDRAFT_59675 [Aureococcus anophagefferens]) HSP 1 Score: 155.221 bits (391), Expect = 1.017e-44 Identity = 74/130 (56.92%), Postives = 91/130 (70.00%), Query Frame = 0
Query: 82 DSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
D L RAY TGRRKTS ARVW+L GDG + +NGK + +YF R + D+++ PF VT + FDVK TVKGGG +GQ GA+ GI+RAL+ +DPA+RP L TRD R VE KK G+ KARK QWVKR
Sbjct: 27 DDLGRAYGTGRRKTSSARVWVLPGDGTVTINGKNLLDYFARRTHVDEVVAPFAVTRTACNFDVKATVKGGGLSGQAGAVRHGIARALQNYDPAYRPALKSAGFITRDPRMVERKKPGRKKARKAFQWVKR 156
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|325183358|emb|CCA17820.1| (30S ribosomal protein S9 putative [Albugo laibachii Nc14]) HSP 1 Score: 158.688 bits (400), Expect = 2.609e-44 Identity = 87/181 (48.07%), Postives = 110/181 (60.77%), Query Frame = 0
Query: 36 VTNTGTATMACARRFSTSTPLAAEGDDPSAAVNDAHASPPPLNPR-LDSLNRAYATGRRKTSVARVWLLAGD----GRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
VT+ GT T + R L E + A A P + R +D RAY TGRRKTS ARVW+ G + VN K++ +YF R + R++++ PFVV + VG FDV C V+GGG +GQ GAI GISRAL+ +DP++RP L +E TRD R VE KK GQPKARKK QWVKR
Sbjct: 121 VTDDGTPTWLASYRRMLDDHLKEEEQEKVDCEKSASAEPKIIRTRQVDESGRAYGTGRRKTSTARVWIKKSSTPFRGVVRVNKKDIVDYFVRDSNREEVLSPFVVVDQVGHFDVMCNVRGGGLSGQAGAIRHGISRALQNFDPSYRPLLKQEGYLTRDPRMVERKKPGQPKARKKYQWVKR 301
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|1086592846|emb|SDD73130.1| (small subunit ribosomal protein S9 [Rhodospira trueperi]) HSP 1 Score: 154.836 bits (390), Expect = 2.819e-44 Identity = 75/134 (55.97%), Postives = 93/134 (69.40%), Query Frame = 0
Query: 78 NPRLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
P D+ RAYATGRRK +VARVWL G GRI VNG+++ YF R R + +PFVVT+++GQFDV CTVKGGG +GQ GA+ G+S A+ WDP RPPL + TRDSR VE KK G+ KAR+ Q+ KR
Sbjct: 41 QPIRDAFGRAYATGRRKNAVARVWLKPGSGRITVNGRDIVTYFPRPVLRMVINQPFVVTQTMGQFDVVCTVKGGGLSGQAGAVRHGLSHAMGRWDPLLRPPLKAQGFLTRDSRVVERKKYGKAKARRSFQFSKR 174
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|661878735|emb|CDP17534.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 156.377 bits (394), Expect = 5.107e-44 Identity = 77/132 (58.33%), Postives = 92/132 (69.70%), Query Frame = 0
Query: 80 RLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
++D RAY TGRRK S+ARVW+ GDG+ VVN KE YF +R L+ PF T+++G +DV CTVKGGG +GQVGAI LGISRAL+ W P RPPL + TRDSR VE KK G+ KARK QWVKR
Sbjct: 118 QVDDKGRAYGTGRRKCSIARVWVQPGDGKFVVNDKEFDVYFPMLDHRAALLRPFSETKTLGMWDVSCTVKGGGVSGQVGAIQLGISRALQNWAPDLRPPLREGGFLTRDSRVVERKKPGKAKARKSFQWVKR 249
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|113612054|dbj|BAF22432.1| (Os07g0658200 [Oryza sativa Japonica Group] >gi|937928108|dbj|BAT03025.1| Os07g0658200 [Oryza sativa Japonica Group]) HSP 1 Score: 154.836 bits (390), Expect = 6.383e-44 Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 0
Query: 80 RLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
++D RAY TG+RK S+ARVW+ GDG+ +VN K+ YF +R L+ PF VT+++G++DV CTVKGGG +GQVGAI LGISRAL+ W+P RP L TRDSR VE KK G+ KARK QWVKR
Sbjct: 78 QVDEKGRAYGTGKRKCSIARVWIQPGDGKFIVNDKQFDSYFPILDHRADLLRPFTVTKTLGRWDVTCTVKGGGVSGQVGAIRLGISRALQNWEPGLRPNLKAAGYLTRDSRVVERKKPGKAKARKSFQWVKR 209
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|1214677699|gb|OWY98245.1| (Mitochondrial/chloroplast ribosomal protein S9 [Phytophthora megakarya]) HSP 1 Score: 157.918 bits (398), Expect = 8.097e-44 Identity = 80/135 (59.26%), Postives = 96/135 (71.11%), Query Frame = 0
Query: 81 LDSLNRAYATGRRKTSVARVWLLAG----DGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
LDS RAY TGRRKTSVARVW+ GR+ VN K++ +YF R +R+++++PF V E +G FDV CTVKGGG TGQ GA+ GI+RAL+ +DP RP L KE L TRD R VE KK GQ KARKK QWVKR
Sbjct: 186 LDSKGRAYGTGRRKTSVARVWVKPAAQPFTGRVQVNKKDLVDYFVRDTHREEVLKPFSVVEQIGGFDVYCTVKGGGMTGQAGAVRHGIARALQAFDPELRPALKKEGLLTRDPRMVERKKPGQAKARKKFQWVKR 320
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|527197480|gb|EPS65971.1| (hypothetical protein M569_08805, partial [Genlisea aurea]) HSP 1 Score: 155.221 bits (391), Expect = 9.760e-44 Identity = 74/132 (56.06%), Postives = 92/132 (69.70%), Query Frame = 0
Query: 80 RLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
++D RAY TG+RK S+ARVW+ G G+ VN +E YF +R L+ PF T+++G +DV+CTVKGGGT+GQVGAI LGISRAL+ W+P RPPL TRDSR VE KK G+ KARK QWVKR
Sbjct: 101 QIDDKGRAYGTGKRKCSIARVWIQPGGGKFTVNEREFDVYFPTIDHRAALLRPFSETKTLGMWDVRCTVKGGGTSGQVGAIRLGISRALQNWEPEFRPPLKAAGFLTRDSRVVERKKPGKAKARKSFQWVKR 232 The following BLAST results are available for this feature:
BLAST of EWM28115.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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