EWM28115.1, cds2566 (CDS) Nannochloropsis gaditana

Overview
NameEWM28115.1
Unique Namecds2566
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:698964..699071 -
Alignment locationCM002459.1:698342..698869 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28115.1
Product30s ribosomal protein s9
Orig transcript idgnl|cribi|Naga_100036g8.2535.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:698964..699071 -
CM002459.1supercontigCM002459.1:698342..698869 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR023035Ribosomal_S9_bac/plastid
IPR020574Ribosomal_S9_CS
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR000754Ribosomal_S9
Homology
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|585110459|gb|EWM28115.1| (30s ribosomal protein s9 [Nannochloropsis gaditana])

HSP 1 Score: 434.106 bits (1115), Expect = 5.234e-154
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query:    1 MPLCSTQNRLNMLPTVHSNVSKLSSISRSTALRVLVTNTGTATMACARRFSTSTPLAAEGDDPSAAVNDAHASPPPLNPRLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
            MPLCSTQNRLNMLPTVHSNVSKLSSISRSTALRVLVTNTGTATMACARRFSTSTPLAAEGDDPSAAVNDAHASPPPLNPRLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR
Sbjct:    1 MPLCSTQNRLNMLPTVHSNVSKLSSISRSTALRVLVTNTGTATMACARRFSTSTPLAAEGDDPSAAVNDAHASPPPLNPRLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211          
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|1088442766|gb|OHC79579.1| (30S ribosomal protein S9 [Rhodospirillales bacterium RIFCSPLOWO2_01_FULL_65_14])

HSP 1 Score: 160.229 bits (404), Expect = 1.365e-46
Identity = 77/142 (54.23%), Postives = 98/142 (69.01%), Query Frame = 0
Query:   70 AHASPPPLNPRLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
            A A+P    PR+D L R+YATG+RK +VARVW+  G GRIVVNG++  +YF R   R  + +PF VT+  GQ+DV+CTV GGG +GQ GA+  GISRAL  ++P  RP L KE   TRDSR VE KK G+ KAR+  Q+ KR
Sbjct:   16 AEAAPAQPEPRIDELKRSYATGKRKNAVARVWIKPGPGRIVVNGRDSEKYFARPVLRMMINQPFAVTDRQGQYDVQCTVSGGGLSGQAGAVRHGISRALTFYEPGLRPALKKEGFLTRDSRVVERKKYGRRKARRSFQFSKR 157          
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|1109262811|ref|XP_019155536.1| (PREDICTED: 37S ribosomal protein S9, mitochondrial [Ipomoea nil])

HSP 1 Score: 163.31 bits (412), Expect = 4.725e-45
Identity = 78/132 (59.09%), Postives = 94/132 (71.21%), Query Frame = 0
Query:   80 RLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
            ++D   R+Y TGRRK S+ARVW+  GDG+ VVN KE   YF    +R  L+ PF  T+++G +DVKCTVKGGG +GQVGAI LG+SRAL+ WDP  RPPL K    TRDSR VE KK G+ KARK  QWVKR
Sbjct:  267 QVDEKGRSYGTGRRKCSIARVWIEPGDGKFVVNDKEFDVYFPMLDHRANLLRPFSETKTLGMWDVKCTVKGGGVSGQVGAIQLGVSRALQKWDPELRPPLRKGGFLTRDSRVVERKKPGRAKARKSFQWVKR 398          
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|676397765|ref|XP_009042160.1| (hypothetical protein AURANDRAFT_59675 [Aureococcus anophagefferens] >gi|323447203|gb|EGB03140.1| hypothetical protein AURANDRAFT_59675 [Aureococcus anophagefferens])

HSP 1 Score: 155.221 bits (391), Expect = 1.017e-44
Identity = 74/130 (56.92%), Postives = 91/130 (70.00%), Query Frame = 0
Query:   82 DSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
            D L RAY TGRRKTS ARVW+L GDG + +NGK + +YF R  + D+++ PF VT +   FDVK TVKGGG +GQ GA+  GI+RAL+ +DPA+RP L      TRD R VE KK G+ KARK  QWVKR
Sbjct:   27 DDLGRAYGTGRRKTSSARVWVLPGDGTVTINGKNLLDYFARRTHVDEVVAPFAVTRTACNFDVKATVKGGGLSGQAGAVRHGIARALQNYDPAYRPALKSAGFITRDPRMVERKKPGRKKARKAFQWVKR 156          
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|325183358|emb|CCA17820.1| (30S ribosomal protein S9 putative [Albugo laibachii Nc14])

HSP 1 Score: 158.688 bits (400), Expect = 2.609e-44
Identity = 87/181 (48.07%), Postives = 110/181 (60.77%), Query Frame = 0
Query:   36 VTNTGTATMACARRFSTSTPLAAEGDDPSAAVNDAHASPPPLNPR-LDSLNRAYATGRRKTSVARVWLLAGD----GRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
            VT+ GT T   + R      L  E  +       A A P  +  R +D   RAY TGRRKTS ARVW+        G + VN K++ +YF R + R++++ PFVV + VG FDV C V+GGG +GQ GAI  GISRAL+ +DP++RP L +E   TRD R VE KK GQPKARKK QWVKR
Sbjct:  121 VTDDGTPTWLASYRRMLDDHLKEEEQEKVDCEKSASAEPKIIRTRQVDESGRAYGTGRRKTSTARVWIKKSSTPFRGVVRVNKKDIVDYFVRDSNREEVLSPFVVVDQVGHFDVMCNVRGGGLSGQAGAIRHGISRALQNFDPSYRPLLKQEGYLTRDPRMVERKKPGQPKARKKYQWVKR 301          
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|1086592846|emb|SDD73130.1| (small subunit ribosomal protein S9 [Rhodospira trueperi])

HSP 1 Score: 154.836 bits (390), Expect = 2.819e-44
Identity = 75/134 (55.97%), Postives = 93/134 (69.40%), Query Frame = 0
Query:   78 NPRLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
             P  D+  RAYATGRRK +VARVWL  G GRI VNG+++  YF R   R  + +PFVVT+++GQFDV CTVKGGG +GQ GA+  G+S A+  WDP  RPPL  +   TRDSR VE KK G+ KAR+  Q+ KR
Sbjct:   41 QPIRDAFGRAYATGRRKNAVARVWLKPGSGRITVNGRDIVTYFPRPVLRMVINQPFVVTQTMGQFDVVCTVKGGGLSGQAGAVRHGLSHAMGRWDPLLRPPLKAQGFLTRDSRVVERKKYGKAKARRSFQFSKR 174          
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|661878735|emb|CDP17534.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 156.377 bits (394), Expect = 5.107e-44
Identity = 77/132 (58.33%), Postives = 92/132 (69.70%), Query Frame = 0
Query:   80 RLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
            ++D   RAY TGRRK S+ARVW+  GDG+ VVN KE   YF    +R  L+ PF  T+++G +DV CTVKGGG +GQVGAI LGISRAL+ W P  RPPL +    TRDSR VE KK G+ KARK  QWVKR
Sbjct:  118 QVDDKGRAYGTGRRKCSIARVWVQPGDGKFVVNDKEFDVYFPMLDHRAALLRPFSETKTLGMWDVSCTVKGGGVSGQVGAIQLGISRALQNWAPDLRPPLREGGFLTRDSRVVERKKPGKAKARKSFQWVKR 249          
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|113612054|dbj|BAF22432.1| (Os07g0658200 [Oryza sativa Japonica Group] >gi|937928108|dbj|BAT03025.1| Os07g0658200 [Oryza sativa Japonica Group])

HSP 1 Score: 154.836 bits (390), Expect = 6.383e-44
Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 0
Query:   80 RLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
            ++D   RAY TG+RK S+ARVW+  GDG+ +VN K+   YF    +R  L+ PF VT+++G++DV CTVKGGG +GQVGAI LGISRAL+ W+P  RP L      TRDSR VE KK G+ KARK  QWVKR
Sbjct:   78 QVDEKGRAYGTGKRKCSIARVWIQPGDGKFIVNDKQFDSYFPILDHRADLLRPFTVTKTLGRWDVTCTVKGGGVSGQVGAIRLGISRALQNWEPGLRPNLKAAGYLTRDSRVVERKKPGKAKARKSFQWVKR 209          
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|1214677699|gb|OWY98245.1| (Mitochondrial/chloroplast ribosomal protein S9 [Phytophthora megakarya])

HSP 1 Score: 157.918 bits (398), Expect = 8.097e-44
Identity = 80/135 (59.26%), Postives = 96/135 (71.11%), Query Frame = 0
Query:   81 LDSLNRAYATGRRKTSVARVWLLAG----DGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
            LDS  RAY TGRRKTSVARVW+        GR+ VN K++ +YF R  +R+++++PF V E +G FDV CTVKGGG TGQ GA+  GI+RAL+ +DP  RP L KE L TRD R VE KK GQ KARKK QWVKR
Sbjct:  186 LDSKGRAYGTGRRKTSVARVWVKPAAQPFTGRVQVNKKDLVDYFVRDTHREEVLKPFSVVEQIGGFDVYCTVKGGGMTGQAGAVRHGIARALQAFDPELRPALKKEGLLTRDPRMVERKKPGQAKARKKFQWVKR 320          
BLAST of EWM28115.1 vs. NCBI_GenBank
Match: gi|527197480|gb|EPS65971.1| (hypothetical protein M569_08805, partial [Genlisea aurea])

HSP 1 Score: 155.221 bits (391), Expect = 9.760e-44
Identity = 74/132 (56.06%), Postives = 92/132 (69.70%), Query Frame = 0
Query:   80 RLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
            ++D   RAY TG+RK S+ARVW+  G G+  VN +E   YF    +R  L+ PF  T+++G +DV+CTVKGGGT+GQVGAI LGISRAL+ W+P  RPPL      TRDSR VE KK G+ KARK  QWVKR
Sbjct:  101 QIDDKGRAYGTGKRKCSIARVWIQPGGGKFTVNEREFDVYFPTIDHRAALLRPFSETKTLGMWDVRCTVKGGGTSGQVGAIRLGISRALQNWEPEFRPPLKAAGFLTRDSRVVERKKPGKAKARKSFQWVKR 232          
The following BLAST results are available for this feature:
BLAST of EWM28115.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110459|gb|EWM28115.1|5.234e-154100.0030s ribosomal protein s9 [Nannochloropsis gaditana... [more]
gi|1088442766|gb|OHC79579.1|1.365e-4654.2330S ribosomal protein S9 [Rhodospirillales bacteri... [more]
gi|1109262811|ref|XP_019155536.1|4.725e-4559.09PREDICTED: 37S ribosomal protein S9, mitochondrial... [more]
gi|676397765|ref|XP_009042160.1|1.017e-4456.92hypothetical protein AURANDRAFT_59675 [Aureococcus... [more]
gi|325183358|emb|CCA17820.1|2.609e-4448.0730S ribosomal protein S9 putative [Albugo laibachi... [more]
gi|1086592846|emb|SDD73130.1|2.819e-4455.97small subunit ribosomal protein S9 [Rhodospira tru... [more]
gi|661878735|emb|CDP17534.1|5.107e-4458.33unnamed protein product [Coffea canephora][more]
gi|113612054|dbj|BAF22432.1|6.383e-4456.06Os07g0658200 [Oryza sativa Japonica Group] >gi|937... [more]
gi|1214677699|gb|OWY98245.1|8.097e-4459.26Mitochondrial/chloroplast ribosomal protein S9 [Ph... [more]
gi|527197480|gb|EPS65971.1|9.760e-4456.06hypothetical protein M569_08805, partial [Genlisea... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2574rna2574Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications