EWM28133.1, cds2531 (CDS) Nannochloropsis gaditana

Overview
NameEWM28133.1
Unique Namecds2531
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:615244..615534 +
Alignment locationCM002459.1:615646..615734 +
Alignment locationCM002459.1:615856..616294 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28133.1
Product3-hydroxyisobutyrate dehydrogenase
Orig transcript idgnl|cribi|Naga_100036g47.2553.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:615244..615534 +
CM002459.1supercontigCM002459.1:615646..615734 +
CM002459.1supercontigCM002459.1:615856..616294 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0016491oxidoreductase activity
GO:0004616phosphogluconate dehydrogenase (decarboxylating) activity
Vocabulary: INTERPRO
TermDefinition
IPR0089276-PGluconate_DH_C-like
IPR0133286PGD_dom_2
IPR0061156PGDH_NADP-bd
IPR016040NAD(P)-bd_dom
Homology
BLAST of EWM28133.1 vs. NCBI_GenBank
Match: gi|585110477|gb|EWM28133.1| (3-hydroxyisobutyrate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 556.214 bits (1432), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query:    1 MRAQSQSKMAVPMITRRLRTIKLSVHTLQISYSAATSAPMARTRTRLEVSKARKGTLALIGCGKMGFAMGINFLKAGYPLMVYDKYNNENTRRLEAEGASIVKDIRILGSQAQIIVTMLPNDEVLEIVSQDIVPTLSPGALHISCSTVAPSTSRALASVHAAKAVGYVGAPVFARPEGVEEKQAFFVMGGTDVRAMKAAKPVLLATGSDVFEFSRRDAGAGNVVKLCGNFLIASAIESIGEALALAENQGLNRVKVMSMLSDTIFDCLIYKG 272
            MRAQSQSKMAVPMITRRLRTIKLSVHTLQISYSAATSAPMARTRTRLEVSKARKGTLALIGCGKMGFAMGINFLKAGYPLMVYDKYNNENTRRLEAEGASIVKDIRILGSQAQIIVTMLPNDEVLEIVSQDIVPTLSPGALHISCSTVAPSTSRALASVHAAKAVGYVGAPVFARPEGVEEKQAFFVMGGTDVRAMKAAKPVLLATGSDVFEFSRRDAGAGNVVKLCGNFLIASAIESIGEALALAENQGLNRVKVMSMLSDTIFDCLIYKG
Sbjct:    1 MRAQSQSKMAVPMITRRLRTIKLSVHTLQISYSAATSAPMARTRTRLEVSKARKGTLALIGCGKMGFAMGINFLKAGYPLMVYDKYNNENTRRLEAEGASIVKDIRILGSQAQIIVTMLPNDEVLEIVSQDIVPTLSPGALHISCSTVAPSTSRALASVHAAKAVGYVGAPVFARPEGVEEKQAFFVMGGTDVRAMKAAKPVLLATGSDVFEFSRRDAGAGNVVKLCGNFLIASAIESIGEALALAENQGLNRVKVMSMLSDTIFDCLIYKG 272          
BLAST of EWM28133.1 vs. NCBI_GenBank
Match: gi|922854995|gb|KOO23484.1| (3-hydroxyisobutyrate dehydrogenase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 185.267 bits (469), Expect = 1.864e-53
Identity = 105/221 (47.51%), Postives = 140/221 (63.35%), Query Frame = 0
Query:   56 TLALIGCGKMGFAMGINFLKAGYPLMVYDKYNNENTRRLEAEGASIVKDIRILGSQAQIIVTMLPNDEVLEIVS----QDIVPTLSPGALHISCSTVAPSTSRALASVHAAKAVGYVGAPVFARPEGVEEKQAFFVMGGTDVRAMKAAKPVLLATGSDVFEFSRRDAGAGNVVKLCGNFLIASAIESIGEALALAENQGLNRVKVMSMLSDTIFDCLIYKG 272
             +ALIG G MG  M  NF+ AGY + VYD  N    +   A+GA          + A  +VTM+PND VL  V+      I+  + PG++H+SCSTV P TSR LA +HA     +VGAP+FAR +GV  + A F +GG +  A+  A+P+L A  + +FEF   D GAGNVVK+CGN++IAS I++  EAL+LAE  GL+R  VM ML+ TIFDCLIY+G
Sbjct:   14 NVALIGLGAMGLPMLDNFIAAGYKMRVYD-VNASAMKEAAAKGADGAASPAEAAAGADAVVTMVPNDSVLRKVTCAPETGILHAMRPGSVHVSCSTVHPDTSRELARLHATAGSAFVGAPIFARADGVARRLASFCVGG-EAGAIAMARPLLEANANGIFEFGD-DPGAGNVVKICGNYMIASTIQTCAEALSLAEKSGLDRQAVMRMLNTTIFDCLIYRG 231          
BLAST of EWM28133.1 vs. NCBI_GenBank
Match: gi|570319411|gb|ETO67359.1| (hypothetical protein F444_15716 [Phytophthora parasitica P1976])

HSP 1 Score: 177.563 bits (449), Expect = 3.782e-50
Identity = 98/232 (42.24%), Postives = 134/232 (57.76%), Query Frame = 0
Query:   50 SKARKGTLALIGCGKMGFAMGINFLKAGYPLMVYDKYNNENTRRLEAEGASIVKDIRILGSQAQIIVTMLPNDEVLEIVS--------QDIVPTLSPGALHISCSTVAPSTSRALASVHAAKAVGYVGAPVFARPEGVEEKQAFFVMGGTDVRAMKAAKPVLL-ATGSDVFEFSRRDAGAGNVVKLCGNFLIASAIESIGEALALAENQGLNRVKVMSMLSDTIFDCLIYKG 272
            S A    +  IG G MGF M  N LKAG  ++ +D  N  N  RL   GA     +  + +Q   I ++LP DE++  V+          ++ T++PGALH+ CST+ P+TSR+L   H      YV AP+FARP+G+E  QA FV+ G+D  A++ A   L   T   V  FS  D+GA N VKL GNFLIASAIES+ EAL+L E  G++RV+ M   S T  + +I+KG
Sbjct:   19 SAASSNAVGFIGLGNMGFPMAHNLLKAGVDVLCFDT-NRANIDRLVVLGAKPAASVEEVAAQTNTIFSVLPRDEIIRSVALGDKGKHGSGLLATMTPGALHVGCSTIHPNTSRSLDVKHREAKTKYVAAPIFARPDGMEAMQANFVVSGSDAAAVEQASQWLHKCTNGQVASFSTEDSGAANAVKLSGNFLIASAIESMAEALSLLEANGVDRVQAMQFYSSTFMNSVIHKG 249          
BLAST of EWM28133.1 vs. NCBI_GenBank
Match: gi|567953132|gb|ETK78791.1| (hypothetical protein L915_15280 [Phytophthora parasitica] >gi|567981785|gb|ETL32221.1| hypothetical protein L916_15172 [Phytophthora parasitica] >gi|568011300|gb|ETL85478.1| hypothetical protein L917_15001 [Phytophthora parasitica] >gi|568041203|gb|ETM38622.1| hypothetical protein L914_15135 [Phytophthora parasitica])

HSP 1 Score: 176.792 bits (447), Expect = 6.965e-50
Identity = 98/232 (42.24%), Postives = 134/232 (57.76%), Query Frame = 0
Query:   50 SKARKGTLALIGCGKMGFAMGINFLKAGYPLMVYDKYNNENTRRLEAEGASIVKDIRILGSQAQIIVTMLPNDEVLEIVS--------QDIVPTLSPGALHISCSTVAPSTSRALASVHAAKAVGYVGAPVFARPEGVEEKQAFFVMGGTDVRAMKAAKPVLL-ATGSDVFEFSRRDAGAGNVVKLCGNFLIASAIESIGEALALAENQGLNRVKVMSMLSDTIFDCLIYKG 272
            S A    +  IG G MGF M  N LKAG  ++ +D  N  N  RL   GA     +  + +Q   I ++LP DE++  V+          ++ T++PGALH+ CST+ P+TSR+L   H      YV AP+FARP+G+E  QA FV+ G+D  A++ A   L   T   V  FS  D+GA N VKL GNFLIASAIES+ EAL+L E  G++RV+ M   S T  + +I+KG
Sbjct:   19 SAASSNAVGFIGLGNMGFPMAHNLLKAGVDVLCFDT-NRANIDRLVVLGAKPAASVEEVAAQTNTIFSVLPRDEIIRSVALGDKGKHGSGLLATMTPGALHVGCSTIHPNTSRSLDVKHREAKTKYVAAPIFARPDGMEAMQANFVVSGSDAAAVEQASQWLHKCTNGRVASFSTEDSGAANAVKLSGNFLIASAIESMAEALSLLEANGVDRVQAMQFYSSTFMNSVIHKG 249          
BLAST of EWM28133.1 vs. NCBI_GenBank
Match: gi|675172823|ref|XP_008895296.1| (hypothetical protein PPTG_04760 [Phytophthora parasitica INRA-310] >gi|568104800|gb|ETN19445.1| hypothetical protein PPTG_04760 [Phytophthora parasitica INRA-310])

HSP 1 Score: 175.637 bits (444), Expect = 1.819e-49
Identity = 97/230 (42.17%), Postives = 133/230 (57.83%), Query Frame = 0
Query:   52 ARKGTLALIGCGKMGFAMGINFLKAGYPLMVYDKYNNENTRRLEAEGASIVKDIRILGSQAQIIVTMLPNDEVLEIVS--------QDIVPTLSPGALHISCSTVAPSTSRALASVHAAKAVGYVGAPVFARPEGVEEKQAFFVMGGTDVRAMKAAKPVLL-ATGSDVFEFSRRDAGAGNVVKLCGNFLIASAIESIGEALALAENQGLNRVKVMSMLSDTIFDCLIYKG 272
            A    +  IG G MGF M  N LKAG  ++ +D  N  N  RL   GA     +  + +Q   I ++LP DE++  V+          ++ T++PGALH+ CST+ P+TSR+L   H      YV AP+FARP+G+E  QA FV+ G+D  A++ A   L   T   V  FS  D+GA N VKL GNFLIASAIES+ EAL+L E  G++RV+ M   S T  + +I+KG
Sbjct:   20 ASSNAVGFIGLGNMGFPMAHNLLKAGVDVLCFDT-NRANIDRLVVLGAKPAASVEEVAAQTNTIFSVLPRDEIIRSVALGDKGKHGSGLLATMTPGALHVGCSTIHPNTSRSLDVKHREAKTKYVAAPIFARPDGMEAMQANFVVSGSDAAAVEQASQWLHKCTNGRVASFSTEDSGAANAVKLSGNFLIASAIESMAEALSLLEANGVDRVQAMQFYSSTFMNSVIHKG 248          
BLAST of EWM28133.1 vs. NCBI_GenBank
Match: gi|566015677|gb|ETI38588.1| (hypothetical protein F443_15738 [Phytophthora parasitica P1569] >gi|570943238|gb|ETP08495.1| hypothetical protein F441_15558 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 175.637 bits (444), Expect = 2.003e-49
Identity = 97/230 (42.17%), Postives = 133/230 (57.83%), Query Frame = 0
Query:   52 ARKGTLALIGCGKMGFAMGINFLKAGYPLMVYDKYNNENTRRLEAEGASIVKDIRILGSQAQIIVTMLPNDEVLEIVS--------QDIVPTLSPGALHISCSTVAPSTSRALASVHAAKAVGYVGAPVFARPEGVEEKQAFFVMGGTDVRAMKAAKPVLL-ATGSDVFEFSRRDAGAGNVVKLCGNFLIASAIESIGEALALAENQGLNRVKVMSMLSDTIFDCLIYKG 272
            A    +  IG G MGF M  N LKAG  ++ +D  N  N  RL   GA     +  + +Q   I ++LP DE++  V+          ++ T++PGALH+ CST+ P+TSR+L   H      YV AP+FARP+G+E  QA FV+ G+D  A++ A   L   T   V  FS  D+GA N VKL GNFLIASAIES+ EAL+L E  G++RV+ M   S T  + +I+KG
Sbjct:   20 ASSNAVGFIGLGNMGFPMAHNLLKAGVDVLCFDT-NRANIDRLVVLGAKPAASVEEVAAQTNTIFSVLPRDEIIRSVALGDKGKHGSGLLATMTPGALHVGCSTIHPNTSRSLDVKHREAKTKYVAAPIFARPDGMEAMQANFVVSGSDAAAVEQASQWLHKCTNGRVASFSTEDSGAANAVKLSGNFLIASAIESMAEALSLLEANGVDRVQAMQFYSSTFMNSVIHKG 248          
BLAST of EWM28133.1 vs. NCBI_GenBank
Match: gi|695463627|ref|XP_009538766.1| (hypothetical protein PHYSODRAFT_258132 [Phytophthora sojae] >gi|348666077|gb|EGZ05905.1| hypothetical protein PHYSODRAFT_258132 [Phytophthora sojae])

HSP 1 Score: 168.318 bits (425), Expect = 5.449e-47
Identity = 94/217 (43.32%), Postives = 126/217 (58.06%), Query Frame = 0
Query:   65 MGFAMGINFLKAGYPLMVYDKYNNENTRRLEAEGASIVKDIRILGSQAQIIVTMLPNDEVLEIV--------SQDIVPTLSPGALHISCSTVAPSTSRALASVHAAKAVGYVGAPVFARPEGVEEKQAFFVMGGTDVRAMKAAKPVLL-ATGSDVFEFSRRDAGAGNVVKLCGNFLIASAIESIGEALALAENQGLNRVKVMSMLSDTIFDCLIYKG 272
            MGF M  N LKAG  ++ +D  N  N  RL   GA     +  + +Q   I ++LP DEV+  V           ++  L+PGALH+ CST+ P+TSRAL + H      YV AP+FARP+G+E  QA FV+ G+   A++ A   L   T   V  FS  D GA + VKLCGNFLIA+AIES+ EALAL E  G++RV+ M   S T  + +I+KG
Sbjct:    1 MGFPMAHNLLKAGVDVLCFDA-NRSNVDRLALLGAKPTDSVEQVAAQTNTIFSVLPRDEVVTSVVLGDEAKPGSGLLANLAPGALHVGCSTIHPNTSRALDAKHREVKTRYVAAPIFARPDGMEAMQANFVLSGSAADAVEQASQWLHKCTNGRVAPFSNEDPGAASAVKLCGNFLIATAIESMAEALALLEANGVDRVQAMQFYSSTFLNSVIHKG 216          
BLAST of EWM28133.1 vs. NCBI_GenBank
Match: gi|1129184689|gb|OLP91220.1| (putative oxidoreductase YfjR [Symbiodinium microadriaticum])

HSP 1 Score: 176.022 bits (445), Expect = 1.864e-46
Identity = 98/219 (44.75%), Postives = 138/219 (63.01%), Query Frame = 0
Query:   57 LALIGCGKMGFAMGINFLKAGYPLMVYDKYNNENTRRLEAEGASIVKDIRILGSQAQIIVTMLPNDEVLEIVSQDIVPTLSPGA---LHISCSTVAPSTSRALASVHAAKAVGYVGAPVFARPEGVEEKQAFFVMGGTDVRAMKAAKPVLLATGSDVFEFSRRDAGAGNVVKLCGNFLIASAIESIGEALALAENQGLNRVKVMSMLSDTIFDCLIYKG 272
            L  +G GK+G  M  N  KAG  L+++DK ++     +  E       +  +   A+++ + LP+D VL+ VS +++P L+      +H+SCSTV+PS SR+L+  + A+AVG+V APVFARP+G+   +A F + G D  A     P+L  T   V +F   DAGA NVVKL GNFLIA+AIES+ EA ALAE   ++R K MS++S TIFDCLIYKG
Sbjct:   23 LGFVGLGKIGSGMVTNLTKAGESLIIFDK-SHAAAEAVAGEAVRAATSVAEVAQNAEVVFSALPDDNVLQAVSSELLPALAARGGRPIHVSCSTVSPSISRSLSEAYEARAVGFVSAPVFARPDGMRRGEATFPVSGPDW-AKSRVVPLLQKTALGVHDFGE-DAGAANVVKLGGNFLIAAAIESMAEASALAEGYDVDREKFMSLMSSTIFDCLIYKG 238          
BLAST of EWM28133.1 vs. NCBI_GenBank
Match: gi|301115438|ref|XP_002905448.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110237|gb|EEY68289.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 163.696 bits (413), Expect = 2.679e-45
Identity = 92/217 (42.40%), Postives = 123/217 (56.68%), Query Frame = 0
Query:   65 MGFAMGINFLKAGYPLMVYDKYNNENTRRLEAEGASIVKDIRILGSQAQIIVTMLPNDEVLEIV--------SQDIVPTLSPGALHISCSTVAPSTSRALASVHAAKAVGYVGAPVFARPEGVEEKQAFFVMGGTDVRAMKAAKPVLL-ATGSDVFEFSRRDAGAGNVVKLCGNFLIASAIESIGEALALAENQGLNRVKVMSMLSDTIFDCLIYKG 272
            MGF M  N LKAG  ++ +D  N  N  RL   GA     +  + +Q   I ++LP DE++  V           ++ +++PGALH+ CST+ P+TSR L   H      YV AP+FARP+G+E  QA FV+ G+D  A++ A   L   T   V  FS  D GA N VKL GNFLIASAIES+ EAL L E  G++RV+ M   S T    +I+KG
Sbjct:    1 MGFPMAHNLLKAGVDVLCFDA-NRANVDRLVLLGAKPAASVEEVAAQTSTIFSVLPRDEIVTSVVIGNETKHGSGLLASMAPGALHVGCSTIHPNTSRTLDIKHLEAKTKYVAAPIFARPDGMEAMQANFVVSGSDASAVEQASQWLHKCTNGRVASFSSEDPGAANAVKLSGNFLIASAIESMAEALTLLEANGVDRVQAMEFYSSTFLKSVIHKG 216          
BLAST of EWM28133.1 vs. NCBI_GenBank
Match: gi|970635364|gb|KUF80266.1| (putative oxidoreductase YfjR [Phytophthora nicotianae])

HSP 1 Score: 162.155 bits (409), Expect = 1.008e-44
Identity = 90/213 (42.25%), Postives = 125/213 (58.69%), Query Frame = 0
Query:   69 MGINFLKAGYPLMVYDKYNNENTRRLEAEGASIVKDIRILGSQAQIIVTMLPNDEVLEIVS--------QDIVPTLSPGALHISCSTVAPSTSRALASVHAAKAVGYVGAPVFARPEGVEEKQAFFVMGGTDVRAMKAAKPVLL-ATGSDVFEFSRRDAGAGNVVKLCGNFLIASAIESIGEALALAENQGLNRVKVMSMLSDTIFDCLIYKG 272
            M  N LKAG  ++ +D  N  N  RL   GA     +  + +Q   I ++LP DE++  V+          ++ T++PGALH+ CST+ P+TSR+L   H      YV AP+FARP+G+E  QA FV+ G+D  A++ A   L   T   V  FS  D+GA N VKL GNFLIASAIES+ EAL+L E  G++RV+ M   S T  + +I+KG
Sbjct:    1 MAHNLLKAGVDVLCFDT-NRANIDRLVVLGAKPAASVEEVAAQTNTIFSVLPRDEIIRSVALGDKGKHGSGLLATMTPGALHVGCSTIHPNTSRSLDVKHREAKTKYVAAPIFARPDGMEAMQANFVVSGSDAAAVEQASQWLHKCTNGRVASFSTEDSGAANAVKLSGNFLIASAIESMAEALSLLEANGVDRVQAMQFYSSTFMNSVIHKG 212          
The following BLAST results are available for this feature:
BLAST of EWM28133.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110477|gb|EWM28133.1|0.000e+0100.003-hydroxyisobutyrate dehydrogenase [Nannochloropsi... [more]
gi|922854995|gb|KOO23484.1|1.864e-5347.513-hydroxyisobutyrate dehydrogenase [Chrysochromuli... [more]
gi|570319411|gb|ETO67359.1|3.782e-5042.24hypothetical protein F444_15716 [Phytophthora para... [more]
gi|567953132|gb|ETK78791.1|6.965e-5042.24hypothetical protein L915_15280 [Phytophthora para... [more]
gi|675172823|ref|XP_008895296.1|1.819e-4942.17hypothetical protein PPTG_04760 [Phytophthora para... [more]
gi|566015677|gb|ETI38588.1|2.003e-4942.17hypothetical protein F443_15738 [Phytophthora para... [more]
gi|695463627|ref|XP_009538766.1|5.449e-4743.32hypothetical protein PHYSODRAFT_258132 [Phytophtho... [more]
gi|1129184689|gb|OLP91220.1|1.864e-4644.75putative oxidoreductase YfjR [Symbiodinium microad... [more]
gi|301115438|ref|XP_002905448.1|2.679e-4542.40conserved hypothetical protein [Phytophthora infes... [more]
gi|970635364|gb|KUF80266.1|1.008e-4442.25putative oxidoreductase YfjR [Phytophthora nicotia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2539rna2539Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications