rna2539, rna2539 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2539
Unique Name	rna2539
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1144
Alignment location	CM002459.1:614152..616876 +

Link to JBrowse

Properties


Property Name	Value
Product	3-hydroxyisobutyrate dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100036g47.2553.mrna
Orig protein id	gnl\|cribi\|Naga_100036g47.2553
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:614152..616876 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100036g47	gene2427	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2539	rna2539-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28133.1	cds2531	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:614152..616876+
coding sequence from alignment at CM002459.1:614152..616876+

mRNA sequence

>rna2539 ID=rna2539|Name=rna2539|organism=Nannochloropsis gaditana|type=mRNA|length=1144bp
TCGCCGTTCGCACGCGACTTGCACAATGTTGCATATCGGTAGGTGGAATG
CCTGCCTGCATACCAGAGGGAGCTACGGCATCAACGGGCTCGGAAGTAAA
TCGAGATGGTCACGGGAGAGTCGCGCTGAAAGAACTCGATATTTTTGACC
TTCACTCCGGGGTGGAGAACCAAGGCCCGGCCAGACTTCCACATCGCGAA
AAGGGAGGACAAAGTGACGGTCTCTGATACCCCGCGCATTCAGCCAATTA
AGACATCGCTCGGCTTGAAGCGACTGGAGCTCTCTACTGAAAGCCGAGGC
CAAGGAAATCGCACTCCTCGACCATATCTTTATGGAGGAACGGAATGACG
AAAAAGCTCTACTATCGCCCTTACGCTTGCGTGGACTCCGAGTGGCGGTG
GAAGACAGTAGTAGCAAGAAGAAAGGATTTGGGTTCGTAGTAGCGGTGGC
CTTCACAGTGAACTACATCATGGGGACTGGCTTTTTGACCTTGCCTTACG
CGACAGCACAAACGGGATCTGTCCTTGCCATCGTCGCCCTATTTTCAATG
GCTGCTTTGAGTAATATAGCCAAAGATTACGTGCTGGAGAGCAGTGCACG
GGCTGAACTTATTGAAAATCCAAGCTGTTTTCTTACGGAAGGCCAAGCAG
GCGGGATTGTGACACCTGCCCTAGTCCGGCGAATACACATCTCGCAGGAC
TTGCCATTGCTATTGACTGTAAAGAAGCGTAAGTATGAAATGCCCACGCT
CTGTCAACTGTTTTTGGGCTACCATGGTAAGGTGCTCTACATGATATGCC
TTTCCATCTACATCTATGGAGCATTGCTGGCGTACGGCACAGTCTTCGCG
AATTCGGTGGCGGCTATGTTCCCCCTCCCCGCCCCTCACGCCGATGCCAC
TTATGGTGTGTACCTCGGCCTCTTCGCAGTCCTGGTAATACCGCTGAGCT
GTCTGGAATTAACAGAGCAGATCTCAGTCCAAATGGCCTTGGCCTCCTGT
CGGCTACTCATGGTCGCCTGCATGGTGGGCTCCGTGCTGGCTGCCTGCGC
CCACACCGGTGAGTCGTTTCCCGAGCAGCAAGAGCCGGTGGGGATCCCGC
TCTGGAGGTGGGATGGCATGCCTGTGTTCCTGCCCATCGCCTGC

protein sequence of rna2539

>rna2539-protein ID=rna2539-protein|Name=rna2539|organism=Nannochloropsis gaditana|type=polypeptide|length=272bp
MRAQSQSKMAVPMITRRLRTIKLSVHTLQISYSAATSAPMARTRTRLEVS
KARKGTLALIGCGKMGFAMGINFLKAGYPLMVYDKYNNENTRRLEAEGAS
IVKDIRILGSQAQIIVTMLPNDEVLEIVSQDIVPTLSPGALHISCSTVAP
STSRALASVHAAKAVGYVGAPVFARPEGVEEKQAFFVMGGTDVRAMKAAK
PVLLATGSDVFEFSRRDAGAGNVVKLCGNFLIASAIESIGEALALAENQG
LNRVKVMSMLSDTIFDCLIYKG

mRNA from alignment at CM002459.1:614152..616876+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2539 ID=rna2539|Name=rna2539|organism=Nannochloropsis gaditana|type=mRNA|length=2725bp|location=Sequence derived from alignment at CM002459.1:614152..616876+ (Nannochloropsis gaditana)
ATTCCTTCATCTACCACCACTCCATCGccggcctctcccaccccgtCCGC
GACAAGACCCTTCTTGGGCAAATCTTCCTGGCAACCTTCGTCATGAGCGG
CATTTTCTACGGAGTGATCGCTCTCTTGGTGGCTTATTACTTCGGTCCTG
GCATGGCGCAGTCGTCCAATCTGGAGTGGACGGGCTACGGGCACACCGGC
CTGGGGCGAGTTGTGGGGACCTACGTCCTGCTTTTCCCCGCACTCGATGT
GGCAAGTACGTCGACACTTGGGCTGTGGCTCGGGATGAAAGGAGACTGAA
GACAGGCACCTCATGATCAGCGAGTGTTCGACCGATTTAGGTGCACCACC
ATGAACAGAACAGGACAGAGAGCGGACTTTTTCGCACCCACACTCATTGT
CTTTTTTCATAATCTGCGACAGGTGCTTTCCCCCTGAACGCGATCACGCT
GGGCAACAACATGCTGGACATGGGAAACGATCAGAAGCGCCCGGACGGTA
GCCCAGACCATCCATCGAGGGTCACGACCGTCGCCTTCCGCCTCTTAGCC
GCGATCCCCCCCCTGGTGGCGGCTCTCTTCCTGCGAGACCTCGGCCGAAT
AAGCGAATATGCCGGCACGGTGGGCATTATCATCACCCTTGTGTTCCCAG
CTGTTCTTAATCTTCGCTCTCGTACTCGAATGAAGGATCTTTTCCAGCTA
GAATCTGCCCGGACATACTACAGCAACGAGCTCTCGCGCAAGCGCTACGG
ACCCGTGAATCTGGCCATTGGCATAGGGTTGTTCTTATACATTCTGATTA
ATCTGCTTATGGATTGAATAAAATCATGTGTTGACTGTAGCACGAAGGGA
TAGGTTAAGGCTTGCTGCACACGATAACGTCTTGTCCTGTCCATGTATAA
AGAACTGTCGTGCGGGGCATGACCGATCGCCGCCGTAAGTAATATCGGCG
CGCTTTATAGTACAAAATAAATGTCCGCAGTCATGCCGCTGTTTTGCATA
ACTTACGAGGCGTGTCAGGCTCGACACATCCTACCGGAATTGATTTGTGG
TTCCCGCGCTTCTCTCTGGTACTCATCTTATGTCTTCCTTCCATGCGAGC
ACAGTCACAGAGCAAGATGGCCGTGCCCATGATCACGCGCAGGCTGCGAA
CGATAAAGCTGTCAGTGCATACCCTCCAAATTTCTTACTCAGCAGCCACG
TCTGCGCCTATGGCTAGAACGCGTACGCGCCTTGAGGTATCTAAAGCTCG
GAAGGGAACACTCGCCTTGATTGGATGCGGGAAAATGGGGTTCGCTATGG
GAATAAATTTCTTGAAAGCCGGCTATCCGCTGATGGTTTACGACAAATAC
AATAACGAGAATACAAGACGACTTGAAGCAGAGGTGAGATGCCTTGGAAT
CCATTTTCAAAGAGCTGGCGTCGAGATTGATTGCATTGCCATTGTGCGCA
TAAAGTACCCATTGATAAGATGGAGTGAATCATACCACCTCCAGGGGGCA
TCTATCGTCAAGGACATTCGAATCCTAGGATCACAGGCACAAATAATTGT
GACGATGTTACCGAATGATGAAGTCTTGGAAATGTGAGCTCCGAGGGCGG
GCCGCGGGGCTTATGTGGAATCGTGCTCTGTCAGTAATATGAGATTCTGT
CTCAACATTGTTTAATTCTCATTGTTTGAACATTTTCAATTCTTTTAAAT
GAAGCGTGTCACAAGACATTGTGCCAACCCTTTCGCCAGGCGCGCTTCAT
ATCAGCTGTTCGACCGTCGCACCATCTACGTCTCGTGCGCTCGCCTCTGT
ACACGCTGCAAAAGCCGTTGGGTACGTGGGTGCTCCAGTCTTTGCTCGTC
ctgagggcgtggaggaaaaacAAGCTTTTTTTGTGATGGGAGGCACAGAT
GTTCGCGCGATGAAAGCTGCGAAACCTGTTCTCCTGGCCACTGGATCGGA
TGTTTTCGAGTTCAGTCGAAGAGATGCTGGGGCGGGCAATGTTGTGAAGC
TGTGCGGTAATTTTCTCATCGCCAGTGCCATCGAAAGCATTGGAGAAGCG
CTCGCTCTAGCCGAGAATCAAGGATTGAATCGAGTCAAGGTTATGTCTAT
GCTCAGCGACACGATTTTTGACTGCCTCATCTACAAAGGGTAAGTGGCCT
GTAAGGTGTCAGGAGATCGCTGGAAGGCTACCCGGTTCTTTTGGATGATG
CCTCAATGTAAGACGATTCACCAACCATGCCCGGTCCTTGGAAGCTATGG
CGAGCGTCTTTCACGGCGGGACCATCGACAGGGTGGTTTCGCTCTCAGCT
TGGGTCATAAAGACATCTCCTTGGTGCTGGACGCGGCTCGCCGTGGGAGG
GTTCCGATGCCGTTCGCTTCGCTGCTCCAGGATCGCCTGACAAGCACAAT
GAACCAAAAAGATTTGAATGGTATGGACTGGAGTGCCATTGGAGTTGAAA
TAAGTAGAAATGCTGGTACTCTTCTACATGTGGGAACGGACCCAAACCAG
CGAATTCGAAAGCGGAAGGCGAAGAacagaaaaaaggaagaagactgTGA
AGTTTCATCGCCCCAGAAGTGACGAGGATTTTGCAAAATGCTATCTTTTC
ATTCATTGCTTATTACTTCGCAGAAAAGACAACCAAGCAACTAAAGATAC
CCCGCAAGTATTAATAGACGGACAGTCGAACAGGGTGTGCCGTCCAGAGA
AAAGGCGTGTACGTTGCTGAGCATC

Coding sequence (CDS) from alignment at CM002459.1:614152..616876+

>rna2539 ID=rna2539|Name=rna2539|organism=Nannochloropsis gaditana|type=CDS|length=2457bp|location=Sequence derived from alignment at CM002459.1:614152..616876+ (Nannochloropsis gaditana)
ATGCGAGCACAGTCACAGAGCAAGATGGCCGTGCCCATGATCACGCGCAG
GCTGCGAACGATAAAGCTGTCAGTGCATACCCTCCAAATTTCTTACTCAG
CAGCCACGTCTGCGCCTATGGCTAGAACGCGTACGCGCCTTGAGGTATCT
AAAGCTCGGAAGGGAACACTCGCCTTGATTGGATGCGGGAAAATGGGGTT
CGCTATGGGAATAAATTTCTTGAAAGCCGGCTATCCGCTGATGGTTTACG
ACAAATACAATAACGAGAATACAAGACGACTTGAAGCAGAGGGGGCATCT
ATCGTCAAGGACATTCGAATCCTAGGATCACAGGCACAAATAATTGTGAC
GATGTTACCGAATGATGAAGTCTTGGAAATCGTGTCACAAGACATTGTGC
CAACCCTTTCGCCAGGCGCGCTTCATATCAGCTGTTCGACCGTCGCACCA
TCTACGTCTCGTGCGCTCGCCTCTGTACACGCTGCAAAAGCCGTTGGGTA
CGTGGGTGCTCCAGTCTTTGCTCGTCctgagggcgtggaggaaaaacAAG
CTTTTTTTGTGATGGGAGGCACAGATGTTCGCGCGATGAAAGCTGCGAAA
CCTGTTCTCCTGGCCACTGGATCGGATGTTTTCGAGTTCAGTCGAAGAGA
TGCTGGGGCGGGCAATGTTGTGAAGCTGTGCGGTAATTTTCTCATCGCCA
GTGCCATCGAAAGCATTGGAGAAGCGCTCGCTCTAGCCGAGAATCAAGGA
TTGAATCGAGTCAAGGTTATGTCTATGCTCAGCGACACGATTTTTGACTG
CCTCATCTACAAAGGGTAAATGCGAGCACAGTCACAGAGCAAGATGGCCG
TGCCCATGATCACGCGCAGGCTGCGAACGATAAAGCTGTCAGTGCATACC
CTCCAAATTTCTTACTCAGCAGCCACGTCTGCGCCTATGGCTAGAACGCG
TACGCGCCTTGAGGTATCTAAAGCTCGGAAGGGAACACTCGCCTTGATTG
GATGCGGGAAAATGGGGTTCGCTATGGGAATAAATTTCTTGAAAGCCGGC
TATCCGCTGATGGTTTACGACAAATACAATAACGAGAATACAAGACGACT
TGAAGCAGAGGGGGCATCTATCGTCAAGGACATTCGAATCCTAGGATCAC
AGGCACAAATAATTGTGACGATGTTACCGAATGATGAAGTCTTGGAAATC
GTGTCACAAGACATTGTGCCAACCCTTTCGCCAGGCGCGCTTCATATCAG
CTGTTCGACCGTCGCACCATCTACGTCTCGTGCGCTCGCCTCTGTACACG
CTGCAAAAGCCGTTGGGTACGTGGGTGCTCCAGTCTTTGCTCGTCctgag
ggcgtggaggaaaaacAAGCTTTTTTTGTGATGGGAGGCACAGATGTTCG
CGCGATGAAAGCTGCGAAACCTGTTCTCCTGGCCACTGGATCGGATGTTT
TCGAGTTCAGTCGAAGAGATGCTGGGGCGGGCAATGTTGTGAAGCTGTGC
GGTAATTTTCTCATCGCCAGTGCCATCGAAAGCATTGGAGAAGCGCTCGC
TCTAGCCGAGAATCAAGGATTGAATCGAGTCAAGGTTATGTCTATGCTCA
GCGACACGATTTTTGACTGCCTCATCTACAAAGGGTAAATGCGAGCACAG
TCACAGAGCAAGATGGCCGTGCCCATGATCACGCGCAGGCTGCGAACGAT
AAAGCTGTCAGTGCATACCCTCCAAATTTCTTACTCAGCAGCCACGTCTG
CGCCTATGGCTAGAACGCGTACGCGCCTTGAGGTATCTAAAGCTCGGAAG
GGAACACTCGCCTTGATTGGATGCGGGAAAATGGGGTTCGCTATGGGAAT
AAATTTCTTGAAAGCCGGCTATCCGCTGATGGTTTACGACAAATACAATA
ACGAGAATACAAGACGACTTGAAGCAGAGGGGGCATCTATCGTCAAGGAC
ATTCGAATCCTAGGATCACAGGCACAAATAATTGTGACGATGTTACCGAA
TGATGAAGTCTTGGAAATCGTGTCACAAGACATTGTGCCAACCCTTTCGC
CAGGCGCGCTTCATATCAGCTGTTCGACCGTCGCACCATCTACGTCTCGT
GCGCTCGCCTCTGTACACGCTGCAAAAGCCGTTGGGTACGTGGGTGCTCC
AGTCTTTGCTCGTCctgagggcgtggaggaaaaacAAGCTTTTTTTGTGA
TGGGAGGCACAGATGTTCGCGCGATGAAAGCTGCGAAACCTGTTCTCCTG
GCCACTGGATCGGATGTTTTCGAGTTCAGTCGAAGAGATGCTGGGGCGGG
CAATGTTGTGAAGCTGTGCGGTAATTTTCTCATCGCCAGTGCCATCGAAA
GCATTGGAGAAGCGCTCGCTCTAGCCGAGAATCAAGGATTGAATCGAGTC
AAGGTTATGTCTATGCTCAGCGACACGATTTTTGACTGCCTCATCTACAA
AGGGTAA

Synonyms

Publications