EWM28223.1, cds2444 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|585110568|gb|EWM28223.1| (splicing factor 3b subunit 5 [Nannochloropsis gaditana]) HSP 1 Score: 189.504 bits (480), Expect = 4.290e-61 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDEDD 89 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDEDD Sbjct: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDEDD 89
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|298710928|emb|CBJ32239.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 152.91 bits (385), Expect = 3.010e-46 Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDED 88 MAADRFN+NRSW+H+QNKYVGTGH D TK EW TNQHRD+ A+H+GH D L Y AVA+N+AVGRVRYQLLEKMLQPCGPPP AKDD+D Sbjct: 35 MAADRFNMNRSWDHIQNKYVGTGHSDTTKFEWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLEKMLQPCGPPP-AKDDDD 121
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|953487209|emb|CEG49271.1| (Uncharacterized conserved protein [Plasmopara halstedii]) HSP 1 Score: 145.591 bits (366), Expect = 9.706e-44 Identity = 64/87 (73.56%), Postives = 73/87 (83.91%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDE 87 MAADRFNINR WEHLQ KYVGTGH D TK EW NQHRDT A+HLGH D LAY AVA+N+++GRVRY +LEKMLQPCGPPP +D++ Sbjct: 1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEDEQ 87
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|695431047|ref|XP_009530587.1| (hypothetical protein PHYSODRAFT_259151 [Phytophthora sojae] >gi|348673339|gb|EGZ13158.1| hypothetical protein PHYSODRAFT_259151 [Phytophthora sojae]) HSP 1 Score: 144.821 bits (364), Expect = 1.613e-43 Identity = 64/86 (74.42%), Postives = 72/86 (83.72%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86 MAADRFNINR WEHLQ KYVGTGH D TK EW NQHRDT A+HLGH D LAY AVA+N+++GRVRY +LEKMLQPCGPPP +D+ Sbjct: 1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEDE 86
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|1173960953|gb|OQS07034.1| (hypothetical protein THRCLA_20235 [Thraustotheca clavata]) HSP 1 Score: 142.895 bits (359), Expect = 9.444e-43 Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86 MAADRFNINR WEHLQ KYVGTGH D +K EW NQHRDT A+H+GH D LAY AVA+N+++GRVRY +LEKM+QPCGPPP ++D Sbjct: 1 MAADRFNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHKDMLAYFAVAENESIGRVRYAMLEKMVQPCGPPPIKEED 86
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|570323273|gb|ETO71221.1| (hypothetical protein F444_12391 [Phytophthora parasitica P1976] >gi|570947084|gb|ETP12341.1| hypothetical protein F441_12279 [Phytophthora parasitica CJ01A1] >gi|970633375|gb|KUF79058.1| hypothetical protein AM587_10013184 [Phytophthora nicotianae]) HSP 1 Score: 141.739 bits (356), Expect = 2.925e-42 Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86 MAADRFNINR WEHLQ KYVGTGH D TK EW NQ RDT A+HLGH D LAY AVA+N+++GRVRY +LEKMLQPCGPPP +++ Sbjct: 1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQQRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 86
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|1173926638|gb|OQR80818.1| (hypothetical protein ACHHYP_17189 [Achlya hypogyna]) HSP 1 Score: 141.354 bits (355), Expect = 3.603e-42 Identity = 60/86 (69.77%), Postives = 73/86 (84.88%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86 MAADRFN+NR WEHLQ KYVGTGH D +K EW NQHRDT A+H+GH+D LAY AVA+N+++GRVRY +LEKMLQPCGPPP +++ Sbjct: 1 MAADRFNVNRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLAYFAVAENESLGRVRYTMLEKMLQPCGPPPIKEEE 86
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|1214708950|gb|OWZ20177.1| (hypothetical protein PHMEG_0005437 [Phytophthora megakarya]) HSP 1 Score: 140.198 bits (352), Expect = 1.033e-41 Identity = 61/86 (70.93%), Postives = 71/86 (82.56%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86 MAADRFNINR WEHLQ KYVGTGH D TK EW NQHRDT A+HLGH D +AY AVA+N+++GRVR +LEKMLQPCGPPP +++ Sbjct: 1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMMAYFAVAENESMGRVRSNMLEKMLQPCGPPPQKEEE 86
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|675199437|ref|XP_008908603.1| (hypothetical protein PPTG_13892 [Phytophthora parasitica INRA-310] >gi|566019715|gb|ETI42626.1| hypothetical protein F443_12293 [Phytophthora parasitica P1569] >gi|567957024|gb|ETK82633.1| hypothetical protein L915_12012 [Phytophthora parasitica] >gi|567985684|gb|ETL36023.1| hypothetical protein L916_11937 [Phytophthora parasitica] >gi|568015072|gb|ETL89249.1| hypothetical protein L917_11783 [Phytophthora parasitica] >gi|568045373|gb|ETM42529.1| hypothetical protein L914_11846 [Phytophthora parasitica] >gi|568091277|gb|ETN06101.1| hypothetical protein PPTG_13892 [Phytophthora parasitica INRA-310] >gi|570979522|gb|ETP40446.1| hypothetical protein F442_12207 [Phytophthora parasitica P10297]) HSP 1 Score: 139.813 bits (351), Expect = 1.845e-41 Identity = 61/85 (71.76%), Postives = 70/85 (82.35%), Query Frame = 0 Query: 2 AADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86 AADRFNINR WEHLQ KYVGTGH D TK EW NQ RDT A+HLGH D LAY AVA+N+++GRVRY +LEKMLQPCGPPP +++ Sbjct: 6 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQQRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 90
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|669165202|ref|XP_008618163.1| (splicing factor 3B subunit 5 [Saprolegnia diclina VS20] >gi|813198556|ref|XP_012208861.1| splicing factor 3B subunit 5 [Saprolegnia parasitica CBS 223.65] >gi|530730273|gb|EQC28515.1| splicing factor 3B subunit 5 [Saprolegnia diclina VS20] >gi|641526004|gb|KDO20404.1| splicing factor 3B subunit 5 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 138.658 bits (348), Expect = 4.751e-41 Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 0 Query: 1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86 MAADR+NINR WEHLQ KYVGTGH D +K EW NQHRDT A+H+GH+D L Y AVA+N+++GRVRY +LEKMLQPCGPPP +++ Sbjct: 1 MAADRYNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLTYFAVAENESLGRVRYTMLEKMLQPCGPPPFKEEE 86 The following BLAST results are available for this feature:
BLAST of EWM28223.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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