rna2452, rna2452 (mRNA) Nannochloropsis gaditana

Overview
Namerna2452
Unique Namerna2452
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3514
Alignment locationCM002459.1:415769..416570 -

Link to JBrowse

Properties
Property NameValue
Productsplicing factor 3b subunit 5
Orig transcript idgnl|cribi|Naga_100004g88.9154.mrna
Orig protein idgnl|cribi|Naga_100004g88.9154
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:415769..416570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g88gene2345Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2452rna2452-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28223.1cds2444Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2452 ID=rna2452|Name=rna2452|organism=Nannochloropsis gaditana|type=mRNA|length=3514bp
GTTTAGATCATCGCCGCCTTTCGTCTGCACATGCTCGCCACGCGGCTGTC
TCGTTGTCTTATCCACGCCGTCTGCTTATATCTTTTGACACCGCCTTGAA
CATCACGAGTCGAGTCTCTCACCCGATGTCCTTTGCAATCTTTAGTCTCG
TACATGCTTCATTAATCCCGGTCAAGTGTTTCCTCTGTAGAAACGCAGCT
CTTGTTTTTCACATCTTGACACAAACATCCCTAACCCATCACAAGAACAG
GGTTGGCGGCAGGCCATCGAGCTGGCTTGTGTCGTCAGCATGATGGCGGT
GGGGCGAGCGCGTAGCAGCAGCAGTCTAGTTGGTATAGCAAGATATAGCA
CATGGCTCCATCATCATCAGGCGCTCCAGGGTCAAACGTGGAACATGTAC
ACAAAGAGTGCAACACGTGCCAGTCGGCGGACGCCACAGCAGCGATGGCT
GAGCAGTCATCCAAAGGCAGCGAGCCTTGGGTACACATTGCGCGTGGAGG
GCCATTTCGATGAAGCCAAAGCCCAGGCATTGCGGCCAAAGGACGTGGTA
ACCCTGTTCGGCGCCTTCGAGCCCTACAATATTGTCATGCGCCCCCCCGG
GGCCGTCGGGGGGGGGGCCAAGTATCAGGCGAAGAAGGGCAACTCCCTGC
CTCCACCACCGCTTGTTCTCGCCACATTTCAAGTCCCGAGCCTTAAATAC
GCCCGGGAAATTGCCCACTCGTTCCATCATGATGAGAGCTGGGGGGATCG
CATCACGGTGCACCAGGAGCAGGAGACTTTCCCGGTGTTCATCTCGGGCT
TGCCAGAGGGCGTATCAGGATCGGAGCTGAAGAAGCAGATTGATCGGGCA
GGGGCGTCGGACCCCAAACAAAGACGTGTGATGGGGGGAAGTGAACCGGC
CTCCGAGTCGAAGGGTCAGTCCAAAAGCCTTCTGACAGAGACGGCCATCG
ACGCTTACGACACCTACGCTGTCTTCCGATGCCCCGACAAGTACTCGTCC
ATGGGGCTCTTGCAAGGCTCTTTCCAGCTAGCGCCGGTAGGGCCGAAGGC
TCGAGGCAACACGGGGGAGAAGAGACTAGGGGCGGGCGCGGAGAATGGGG
CCGGCGCTACCGAGGCGGAGGCACAGGCGGAAGGCAACGCAGGAGAAAGG
ATGGTGGAGGTGGAGGAAGCGGGGCAGGAGGGGCGGGGGGAAGGGGATGG
GGAGGATGCCCGCGGCGTCCTTAGCTACGCGGCTTGGAAGACATACCCGG
TGCGCGTGAACGGGCTGCCGGGAGACGCGAACGAGGGGGAGGTGATGGCG
GTCTTTTCGAAATACATGCCCTACGATGTGGAGGTCCTGCCCGTGGAGGC
GTCGGAGGCCGCGGACGGGAATGAGGGCGGGACTCGGGGGGCCTACCTGC
GCTTTGCCCGGCGCATACAGGGGGTGGAGTGCGCGAGCGAGATGCAGGAC
GTGAGCGTGCGCAACAATGTCCTGCAGGTGCGAAGGGCCTGGGAGAAGGT
CTACCCCCTGCTGATCGAGGCAGCTTCGGGGGAGGGGAAAGTTACCGCGG
ACGAGCTTGAGCAAGTGCTCGCCCCTTTGAAGAGGATGAAGGACTCGTCC
CTCCTCGACGCCGAGCTCCTGGAGGAGGGGGCAGCGGCGGTGATCCGGTT
CGGGAGTCAGACAGGCGCGGAGGAAGGGCTGGGCGTGTTGGAGGCCGGCG
CGGGGAGCGGGAGGAGGAAAGTGCGGCCGGCGTGGAAGGACTTCCGGGTG
GACGTAAGAAACCTGCCACTGGAGGTGACGCAGGAGGAGCTGCGCGAGAT
GGTTCACCTGACGACCCCCTCCAAAGTGGCGGTGTCCTTGCCCGTGGGCG
GCCGGTACCGGACGGGAAGTCTCTCCTTTACCACGCGGGAAGAGGCAGAC
CTGGCCTTCTCGCAGCTCTCGGGGACGGGCTTGCCGGACCTGAAGCTCCG
GAAGGCGTGGGCCGTGTACCGGCTGAGGGTGAAGGGGCTGCCCGCGGACA
CGAGGGAGGAGGACCTGCGCGAGGTGCTGAGAGGCGGCTACGAGCCCTTC
CAGGTGGACTTCCCTCGGAGTCGGAAGGGGAACCCGAAAGGCGAGGCGGT
GCTCAGGTTCAGGACCTACGACCAGCTGGTGGCGGCGATCGGTCGCCTGT
ACGGGCGGGACTCGCCCATGGATGAGGTCGAGAACCAGGCGCGATGGGCG
TCGGCGGGGGAGGGGATGAGCTTCGACGACCCGGCCGGGAGCTTGGAGGA
GGAGCTGGCGAGGTTGCCACCCTCAGCCTCTTCCCCGCTCTCGACCGAGA
CGGGAATGGGGCTGGACGCACTCTTTGACAGGCACTGGAAGGAAGAGAGG
GGTCCCGGGGAGGAGGGGGGGGGGGAGGCGGGGATGGAGGGGGGCGAGGC
CGCCGCGTCGAAGCCTGGGGGGCTCGGGGTGGCAGAGCCAGGGGCAAAGG
GGAGCGGGAAAGATGTCCAGGAAGAAGAGGAGGAGAAAGAGGAAGAAAGT
TACGCGGGAAGAGACGTCAATCCCTTCGCCATCCATCCGGAGGGCAAGTG
GGTGAAGATGCTGGTGGACACAGACACGACGCAGAAGATCATCAAGGGGG
GGCACATTCTCTCCTATCGCGCTCTGGTGCTCGTAGGCAACCTGAAAGGC
TGCGGAGGCTGGGGCGTGGGGAAAGGCGCGACCCTGGAGGAGGCGCAGAT
ACGGGCCTATAGGGCTGCCAAGAAAAACCTCATCCACATCGATCTCTACC
GCAACCGGTGCATCACCACCGACCTGTACGGGAAGCACAACAATTGCCGC
ATCTATATCCAGGCGGGTCAACCCAACCGACCACATAAGGAGGGGCGAAT
GATAAACGACATGCTGAGGATTATGGGTGTGGAGTGCGGGGAGGCGAGGA
GCATCGGAAGAAGGAACCCCTACTCGGTGGTCAGGGCCTTGTTCCATGCG
ATAAGCAAGCACGAGGGTGTGGAAGCGCTCTCCAGGAAGAGGGGGAGGCG
TTTGATCAGTGTATCTAAAGCGCGTTACTTGGGCTTGTAATCATTGGAAA
TTATGGCCAGGGGGAGGAGGCCTGGGAAGAAAACATTCGCCGTCAAGCAA
GACTCCTGTGTTCATCGAGGCCTGGCACGAAACAGCGACTTGGAAAAGTG
GAAGTCGAAATGTAGTGTTTTTTTTTACTTTCTTTTAAATTTACTCTACA
CGCGCCAGACGTTCTTCACGAGAACCCACTCCCTTCCTAGTCATCCTCAT
CATCTTTTGCTGCCGGGGGGGGACCGCAGGGCTGTAGCATTTTCTCGAGG
AGCTGGTAGCGCACACGACCTACCGCGTCGTTCTGCGCCACTGCAATGTA
GGCAAGCTGGTCGTGATGACCCAAATGAGTAGCGTAGGTGTCCCGATGCT
GGTTCGTCAACCATTCGCTGTCGAGAAAAGGAACGTGAGCAGAATGAGAC
ATGCAACGACATGCACATGCAGCTTGCATCATCCCTTCTGTAACAGTCGA
AACCGCAAAAAAAA
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protein sequence of rna2452

>rna2452-protein ID=rna2452-protein|Name=rna2452|organism=Nannochloropsis gaditana|type=polypeptide|length=89bp
MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQ
LAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDEDD
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mRNA from alignment at CM002459.1:415769..416570-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2452 ID=rna2452|Name=rna2452|organism=Nannochloropsis gaditana|type=mRNA|length=802bp|location=Sequence derived from alignment at CM002459.1:415769..416570- (Nannochloropsis gaditana)
CGCCTTGCGCCTTAGGGCTAGTTCTCACGGTGTAATCGACTGGGTTGCGA
TCCTCCCTTTGATAAGGCATCACATCCATTGTATCTTCTATATTACAGAG
CAGATACGAGAGCGGACACACGTAGGGAGAAGGCCCCACCTGGCACACGT
AGCCGGCATCGATCATGGTGAGACGCCCCCCCGAACTAGTGGAGGCGGCA
CCGATCCCTTTTAATCCGTGATGTGCAATTTCTTACAGGCAGCCGACCGA
TTCAATATCAATCGGAGCTGGGAGCATCTTCAAAATAAATATGTCGGGAC
AGGTCATCCCGACCTGACCAAACAGTAAGTGCAGAGGACAACTTCTAGGC
TTCGAATAGTGATGAAATACCCCATTCGGCATTTCACACTTGCGACAGAA
ACAATCTACGTATTTCACCAGAACGCCGTGTACATTCGATTTTTTTTTTT
TGCGGTTTCGACTGTTACAGAAGGGATGATGCAAGCTGCATGTGCATGTC
GTTGCATGTCTCATTCTGCTCACGTTCCTTTTCTCGACAGCGAATGGTTG
ACGAACCAGCATCGGGACACCTACGCTACTCATTTGGGTCATCACGACCA
GCTTGCCTACATTGCAGTGGCGCAGAACGACGCGGTAGGTCGTGTGCGCT
ACCAGCTCCTCGAGAAAATGCTACAGCCCTGCGGTCCCCCCCCGGCAGCA
AAAGATGATGAGGATGACTAGGAAGGGAGTGGGTTCTCGTGAAGAACGTC
TGGCGCGTGTAGAGTAAATTTAAAAGAAAGTAAAAAAAAACACTACATTT
CG
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Coding sequence (CDS) from alignment at CM002459.1:415769..416570-

>rna2452 ID=rna2452|Name=rna2452|organism=Nannochloropsis gaditana|type=CDS|length=810bp|location=Sequence derived from alignment at CM002459.1:415769..416570- (Nannochloropsis gaditana)
CGAATGGTTGACGAACCAGCATCGGGACACCTACGCTACTCATTTGGGTC
ATCACGACCAGCTTGCCTACATTGCAGTGGCGCAGAACGACGCGGTAGGT
CGTGTGCGCTACCAGCTCCTCGAGAAAATGCTACAGCCCTGCGGTCCCCC
CCCGGCAGCAAAAGATGATGAGGATGACTAGGCAGCCGACCGATTCAATA
TCAATCGGAGCTGGGAGCATCTTCAAAATAAATATGTCGGGACAGGTCAT
CCCGACCTGACCAAACAATGCGAATGGTTGACGAACCAGCATCGGGACAC
CTACGCTACTCATTTGGGTCATCACGACCAGCTTGCCTACATTGCAGTGG
CGCAGAACGACGCGGTAGGTCGTGTGCGCTACCAGCTCCTCGAGAAAATG
CTACAGCCCTGCGGTCCCCCCCCGGCAGCAAAAGATGATGAGGATGACTA
GGCAGCCGACCGATTCAATATCAATCGGAGCTGGGAGCATCTTCAAAATA
AATATGTCGGGACAGGTCATCCCGACCTGACCAAACAATGCGAATGGTTG
ACGAACCAGCATCGGGACACCTACGCTACTCATTTGGGTCATCACGACCA
GCTTGCCTACATTGCAGTGGCGCAGAACGACGCGGTAGGTCGTGTGCGCT
ACCAGCTCCTCGAGAAAATGCTACAGCCCTGCGGTCCCCCCCCGGCAGCA
AAAGATGATGAGGATGACTAGGCAGCCGACCGATTCAATATCAATCGGAG
CTGGGAGCATCTTCAAAATAAATATGTCGGGACAGGTCATCCCGACCTGA
CCAAACAATG
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Synonyms
Publications