EWM28223.1, cds2444 (CDS) Nannochloropsis gaditana

Overview
NameEWM28223.1
Unique Namecds2444
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:416404..416406 -
Alignment locationCM002459.1:416247..416332 -
Alignment locationCM002459.1:415850..416030 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28223.1
Productsplicing factor 3b subunit 5
Orig transcript idgnl|cribi|Naga_100004g88.9154.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:416404..416406 -
CM002459.1supercontigCM002459.1:416247..416332 -
CM002459.1supercontigCM002459.1:415850..416030 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR017089Splicing_factor_3B_subunit_5
IPR009846SF3b5/RDS3-10
Homology
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|585110568|gb|EWM28223.1| (splicing factor 3b subunit 5 [Nannochloropsis gaditana])

HSP 1 Score: 189.504 bits (480), Expect = 4.290e-61
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDEDD 89
            MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDEDD
Sbjct:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDEDD 89          
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|298710928|emb|CBJ32239.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 152.91 bits (385), Expect = 3.010e-46
Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDED 88
            MAADRFN+NRSW+H+QNKYVGTGH D TK EW TNQHRD+ A+H+GH D L Y AVA+N+AVGRVRYQLLEKMLQPCGPPP AKDD+D
Sbjct:   35 MAADRFNMNRSWDHIQNKYVGTGHSDTTKFEWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLEKMLQPCGPPP-AKDDDD 121          
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|953487209|emb|CEG49271.1| (Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 145.591 bits (366), Expect = 9.706e-44
Identity = 64/87 (73.56%), Postives = 73/87 (83.91%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDE 87
            MAADRFNINR WEHLQ KYVGTGH D TK EW  NQHRDT A+HLGH D LAY AVA+N+++GRVRY +LEKMLQPCGPPP  +D++
Sbjct:    1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEDEQ 87          
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|695431047|ref|XP_009530587.1| (hypothetical protein PHYSODRAFT_259151 [Phytophthora sojae] >gi|348673339|gb|EGZ13158.1| hypothetical protein PHYSODRAFT_259151 [Phytophthora sojae])

HSP 1 Score: 144.821 bits (364), Expect = 1.613e-43
Identity = 64/86 (74.42%), Postives = 72/86 (83.72%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86
            MAADRFNINR WEHLQ KYVGTGH D TK EW  NQHRDT A+HLGH D LAY AVA+N+++GRVRY +LEKMLQPCGPPP  +D+
Sbjct:    1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEDE 86          
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|1173960953|gb|OQS07034.1| (hypothetical protein THRCLA_20235 [Thraustotheca clavata])

HSP 1 Score: 142.895 bits (359), Expect = 9.444e-43
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86
            MAADRFNINR WEHLQ KYVGTGH D +K EW  NQHRDT A+H+GH D LAY AVA+N+++GRVRY +LEKM+QPCGPPP  ++D
Sbjct:    1 MAADRFNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHKDMLAYFAVAENESIGRVRYAMLEKMVQPCGPPPIKEED 86          
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|570323273|gb|ETO71221.1| (hypothetical protein F444_12391 [Phytophthora parasitica P1976] >gi|570947084|gb|ETP12341.1| hypothetical protein F441_12279 [Phytophthora parasitica CJ01A1] >gi|970633375|gb|KUF79058.1| hypothetical protein AM587_10013184 [Phytophthora nicotianae])

HSP 1 Score: 141.739 bits (356), Expect = 2.925e-42
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86
            MAADRFNINR WEHLQ KYVGTGH D TK EW  NQ RDT A+HLGH D LAY AVA+N+++GRVRY +LEKMLQPCGPPP  +++
Sbjct:    1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQQRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 86          
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|1173926638|gb|OQR80818.1| (hypothetical protein ACHHYP_17189 [Achlya hypogyna])

HSP 1 Score: 141.354 bits (355), Expect = 3.603e-42
Identity = 60/86 (69.77%), Postives = 73/86 (84.88%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86
            MAADRFN+NR WEHLQ KYVGTGH D +K EW  NQHRDT A+H+GH+D LAY AVA+N+++GRVRY +LEKMLQPCGPPP  +++
Sbjct:    1 MAADRFNVNRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLAYFAVAENESLGRVRYTMLEKMLQPCGPPPIKEEE 86          
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|1214708950|gb|OWZ20177.1| (hypothetical protein PHMEG_0005437 [Phytophthora megakarya])

HSP 1 Score: 140.198 bits (352), Expect = 1.033e-41
Identity = 61/86 (70.93%), Postives = 71/86 (82.56%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86
            MAADRFNINR WEHLQ KYVGTGH D TK EW  NQHRDT A+HLGH D +AY AVA+N+++GRVR  +LEKMLQPCGPPP  +++
Sbjct:    1 MAADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQHRDTLASHLGHSDMMAYFAVAENESMGRVRSNMLEKMLQPCGPPPQKEEE 86          
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|675199437|ref|XP_008908603.1| (hypothetical protein PPTG_13892 [Phytophthora parasitica INRA-310] >gi|566019715|gb|ETI42626.1| hypothetical protein F443_12293 [Phytophthora parasitica P1569] >gi|567957024|gb|ETK82633.1| hypothetical protein L915_12012 [Phytophthora parasitica] >gi|567985684|gb|ETL36023.1| hypothetical protein L916_11937 [Phytophthora parasitica] >gi|568015072|gb|ETL89249.1| hypothetical protein L917_11783 [Phytophthora parasitica] >gi|568045373|gb|ETM42529.1| hypothetical protein L914_11846 [Phytophthora parasitica] >gi|568091277|gb|ETN06101.1| hypothetical protein PPTG_13892 [Phytophthora parasitica INRA-310] >gi|570979522|gb|ETP40446.1| hypothetical protein F442_12207 [Phytophthora parasitica P10297])

HSP 1 Score: 139.813 bits (351), Expect = 1.845e-41
Identity = 61/85 (71.76%), Postives = 70/85 (82.35%), Query Frame = 0
Query:    2 AADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86
            AADRFNINR WEHLQ KYVGTGH D TK EW  NQ RDT A+HLGH D LAY AVA+N+++GRVRY +LEKMLQPCGPPP  +++
Sbjct:    6 AADRFNINRQWEHLQAKYVGTGHADTTKFEWAVNQQRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLEKMLQPCGPPPQKEEE 90          
BLAST of EWM28223.1 vs. NCBI_GenBank
Match: gi|669165202|ref|XP_008618163.1| (splicing factor 3B subunit 5 [Saprolegnia diclina VS20] >gi|813198556|ref|XP_012208861.1| splicing factor 3B subunit 5 [Saprolegnia parasitica CBS 223.65] >gi|530730273|gb|EQC28515.1| splicing factor 3B subunit 5 [Saprolegnia diclina VS20] >gi|641526004|gb|KDO20404.1| splicing factor 3B subunit 5 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 138.658 bits (348), Expect = 4.751e-41
Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 0
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDD 86
            MAADR+NINR WEHLQ KYVGTGH D +K EW  NQHRDT A+H+GH+D L Y AVA+N+++GRVRY +LEKMLQPCGPPP  +++
Sbjct:    1 MAADRYNINRQWEHLQAKYVGTGHADTSKFEWAVNQHRDTLASHIGHNDMLTYFAVAENESLGRVRYTMLEKMLQPCGPPPFKEEE 86          
The following BLAST results are available for this feature:
BLAST of EWM28223.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110568|gb|EWM28223.1|4.290e-61100.00splicing factor 3b subunit 5 [Nannochloropsis gadi... [more]
gi|298710928|emb|CBJ32239.1|3.010e-4678.41conserved unknown protein [Ectocarpus siliculosus][more]
gi|953487209|emb|CEG49271.1|9.706e-4473.56Uncharacterized conserved protein [Plasmopara hals... [more]
gi|695431047|ref|XP_009530587.1|1.613e-4374.42hypothetical protein PHYSODRAFT_259151 [Phytophtho... [more]
gi|1173960953|gb|OQS07034.1|9.444e-4370.93hypothetical protein THRCLA_20235 [Thraustotheca c... [more]
gi|570323273|gb|ETO71221.1|2.925e-4272.09hypothetical protein F444_12391 [Phytophthora para... [more]
gi|1173926638|gb|OQR80818.1|3.603e-4269.77hypothetical protein ACHHYP_17189 [Achlya hypogyna... [more]
gi|1214708950|gb|OWZ20177.1|1.033e-4170.93hypothetical protein PHMEG_0005437 [Phytophthora m... [more]
gi|675199437|ref|XP_008908603.1|1.845e-4171.76hypothetical protein PPTG_13892 [Phytophthora para... [more]
gi|669165202|ref|XP_008618163.1|4.751e-4168.60splicing factor 3B subunit 5 [Saprolegnia diclina ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2452rna2452Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications