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Properties
| Property Name | Value |
|---|
| Product | 30s ribosomal protein s5 |
| Orig transcript id | gnl|cribi|Naga_100004g87.9167.mrna |
| Orig protein id | gnl|cribi|Naga_100004g87.9167 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:412614..416127 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2451 ID=rna2451|Name=rna2451|organism=Nannochloropsis gaditana|type=mRNA|length=1598bp
CGCGGTGCCCGCCAGGGATGATACCGATTTCAACTTGCCAGCGCCCGTGT
CGAAATGCGTCCAAGGGGGCTCTACATCTCGATGATCGTCAAGATAGTAA
GGGACTGCATGGCTTTCAGCGTAATGAGGGCAAGGCGTTCGTGGTGCCAT
TTTTTCGACGGACGAAATGTTGGCTTTCTCCGCTTGAGGCTGGTGCCTGA
AGTGATCCTAGTTCAGTGTCTCCCAAGCCGAACGGGTGTTGATCGGCAAC
TTGCCTTCCTTCTTTGTAATTGGGCAGTCATAGACAAACAAACACACACA
TGGTTGTAGAAGCAGGAGAGCACGGGAACGCTTTTACAGGCGCACGTTGA
CTCTTGCAGCAGAGTGTCCGGCAGAACGTCTTGATGGGTATGCGCCTGTT
GCGGCTCCCTGCTCTTACTCCTTGTGTGCAAGTGTTATCATGTCCAAAAG
ACAGACTGAGCATTCTCCCTGGAAGATCTAGCGTACAATGTTGAGTTCAA
GCTGCGAATTCTAACCCTTTTCCAAAATCTTGAAATTTTATGCATATACC
CTGCAGAATCCTCCGTCTCTCGAAATGATGCGCGCCGTTGTTTTGCTGGG
GCTGCTGTCCTCTGCCGCCGCTTTCATTCCTGCGACTTTCAACACAGGCA
AGAGCTCATACGCCCGCAAAAACTTGGTGGTGGCCTCGGTTTCTGACTTG
ATCGGAGCGGACACGGAGACGGGCGGGATCTGGGATCCTCTGGGCCTGAG
CCAGAACGAGGGTTCCCTCCGTAAGTACCGCGAGTGCGAGCTCAAGCACG
GGCGTGTAGCCATGGCTGCCATGCTCGGTATCTTTGTCCAAGGTCTCTAC
CACCTTCCGGATCCCGTCTTTAGCAACCCTCGCCCTCTGGCTGCCTTGCA
GCAGGTCTACGAGCAACGTCCCGAGGCCATTTGGCAGATCATCGTAGGAC
TGGGCGTGATCGAGTTCACGGGGGGCCGACAAAAGGAGGACCGTGCCCCT
GGCGACTTGAACTTTGGTTCTTCTTTCATCCCCAAGAGCGAGAAGGAGTT
CGAGGAATTGCAGCTGAAGGAGCTGAAAAACGGGCGCCTGGCGATGGTGG
CCTCCATGGGCGCCCTGCTCCAGGAATACCTGACAGGCCAGGGGCCGGTG
GAGCAAGTCTTGGCTGGCCACTTGAATCCCTTCGGTGACGGCCAAGGGTT
CTTCTAAACCCAGCCGACTTCTTGGCACCGCAAACGGGAGGGCCCATGGC
GAGAACAAGCTTGATTTTTCATTTCATCGGGCACACGGAGAACACTTCCG
GCGTAGAATAGGCTGGGGAGTCAGTGGATGTAAGGATTATCACCATCATG
AGCGTCCTGATTCATTGTGGGGAGGATAACTGATCGGATAAGAGATCGAA
AAGGAAATCAATCAAGATACCCGGAAATGACAGGCATGTGAATTTTCGTG
AGAGCTACCTCCGCTCCTCATCACTCGTGTAGTGTTATGCACTGCGTACA
GCTCGCAGTGTCTTCCGCCAAGTCGCACAAGATCAAATTTGTGTTAATAA
TGCTATTTACAATCAGTAGCTGGTACTTCTATATTAGGCACCCTCCCC back to topprotein sequence of rna2451 >rna2451-protein ID=rna2451-protein|Name=rna2451|organism=Nannochloropsis gaditana|type=polypeptide|length=916bp
MMAVGRARSSSSLVGIARYSTWLHHHQALQGQTWNMYTKSATRASRRTPQ
QRWLSSHPKAASLGYTLRVEGHFDEAKAQALRPKDVVTLFGAFEPYNIVM
RPPGAVGGGAKYQAKKGNSLPPPPLVLATFQVPSLKYAREIAHSFHHDES
WGDRITVHQEQETFPVFISGLPEGVSGSELKKQIDRAGASDPKQRRVMGG
SEPASESKGQSKSLLTETAIDAYDTYAVFRCPDKYSSMGLLQGSFQLAPV
GPKARGNTGEKRLGAGAENGAGATEAEAQAEGNAGERMVEVEEAGQEGRG
EGDGEDARGVLSYAAWKTYPVRVNGLPGDANEGEVMAVFSKYMPYDVEVL
PVEASEAADGNEGGTRGAYLRFARRIQGVECASEMQDVSVRNNVLQVRRA
WEKVYPLLIEAASGEGKVTADELEQVLAPLKRMKDSSLLDAELLEEGAAA
VIRFGSQTGAEEGLGVLEAGAGSGRRKVRPAWKDFRVDVRNLPLEVTQEE
LREMVHLTTPSKVAVSLPVGGRYRTGSLSFTTREEADLAFSQLSGTGLPD
LKLRKAWAVYRLRVKGLPADTREEDLREVLRGGYEPFQVDFPRSRKGNPK
GEAVLRFRTYDQLVAAIGRLYGRDSPMDEVENQARWASAGEGMSFDDPAG
SLEEELARLPPSASSPLSTETGMGLDALFDRHWKEERGPGEEGGGEAGME
GGEAAASKPGGLGVAEPGAKGSGKDVQEEEEEKEEESYAGRDVNPFAIHP
EGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLE
EAQIRAYRAAKKNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHK
EGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRK
RGRRLISVSKARYLGL back to topmRNA from alignment at CM002459.1:412614..416127+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2451 ID=rna2451|Name=rna2451|organism=Nannochloropsis gaditana|type=mRNA|length=3514bp|location=Sequence derived from alignment at CM002459.1:412614..416127+ (Nannochloropsis gaditana)
GTTTAGATCATCGCCGCCTTTCGTCTGCACATGCTCGCCACGCGGCTGTC
TCGTTGTCTTATCCACGCCGTCTGCTTATATCTTTTGACACCGCCTTGAA
CATCACGAGTCGAGTCTCTCACCCGATGTCCTTTGCAATCTTTAGTCTCG
TACATGCTTCATTAATCCCGGTCAAGTGTTTCCTCTGTAGAAACGCAGCT
CTTGTTTTTCACATCTTGACACAAACATCCCTAACCCATCACAAGAACAG
GGTTGGCGGCAGGCCATCGAGCTGGCTTGTGTCGTCAGCATGATGGCGGT
GGGGCGAGCgcgtagcagcagcagtctaGTTGGTATAGCAAGATATAGCA
CATGGCTCCATCATCATCAGGCGCTCCAGGGTCAAACGTGGAACATGTAC
ACAAAGAGTGCAACACGTGCCAGTCGGCGGACGCCACAGCAGCGATGGCT
GAGCAGTCATCCAAAGGCAGCGAGCCTTGGGTACACATTGCGCGTGGAGG
GCCATTTCGATGAAGCCAAAGCCCAGGCATTGCGGCCAAAGGACGTGGTA
ACCCTGTTCGGCGCCTTCGAGCCCTACAATATTGTCATGCGCCCCCCCGG
ggccgtcggggggggggccaaGTATCAGGCGAAGAAGGGCaactccctgc
ctccaccaccgcttGTTCTCGCCACATTTCAAGTCCCGAGCCTTAAATAC
GCCCGGGAAATTGCCCACTCGTTCCATCATGATGAGAGCTGGGGGGATCG
CATCACGGTGcaccaggagcaggagactTTCCCGGTGTTCATCTCGGGCT
TGCCAGAGGGCGTATCAGGATCGGAGCTGAAGAAGCAGATTGATCGGGCA
GGGGCGTCGGACCCCAAACAAAGACGTGTGATGGGGGGAAGTGAACCGGC
CTCCGAGTCGAAGGGTCAGTCCAAAAGCCTTCTGACAGAGACGGCCATCG
ACGCTTACGACACCTACGCTGTCTTCCGATGCCCCGACAAGTACTCGTCC
ATGGGGCTCTTGCAAGGCTCTTTCCAGCTAGCGCCGGTAGGGCCGAAGGC
TCGAGGCAacacgggggagaagagactaggggcgggcgcggagAATGGGG
CCGGCGCTaccgaggcggaggcacagGCGGAAGGCAACgcaggagaaagg
atggtggaggtggaggaagcggggcaggaggggcggggggaaggggatgg
ggaggatgccCGCGGCGTCCTTAGCTACGCGGCTTGGAAGACATACCCGG
TGCGCGTGAACGGGCTGCCGGGAGACGcgaacgagggggaggtgatggcg
gtCTTTTCGAAATACATGCCCTACGATGTGGAGGTCCTGCCCGTGGAGGC
GTCGGAGGCCGCGGACGGGAATGAGGGCGGGACTCGGGGGGCCTACCTGC
GCTTTGCCCGGCGCATACAGGGGGTGGAGTGCGCGAGCGAGATGCAGGAC
GTGAGCGTGCGCAACAATGTCCTGCAGGTGCGAAGGGCCTGGGAGAAGGT
CTACCCCCTGCTGATCGAGGCAGcttcgggggaggggaaagttACCGCGG
ACGAGCTTGAGCAAGTGCTCGCCCctttgaagaggatgaaggactcgtcc
ctcctcgacgccgagctcctggaggagggggcagcggcGGTGATCCGGTT
CGGGAGTCAGacaggcgcggaggaagggctgggcGTGTTGGAGGCCGGcg
cggggagcgggaggaggaaagtgcgGCCGGCGTGGAAGGACTTCCGGGTG
GACGTAAGAAACCTGCCACTGGAGGTgacgcaggaggagctgcgcgAGAT
GGTTCACCTGACGACCCCCTCCAAAGTGGCGGTGTCCTTGCCCGTGGGCG
GCCGGTACCGGACGGGAAGTCTCTCCTTTACCAcgcgggaagaggcagac
CTGGCCTTCTCGCAGCTCTCGGGGACGGGCTTGCCGGACCTGAAGCTCCG
GAAGGCGTGGGCCGTGTACCGGCTGAGGGTGAAGGGGCTGCCCGCggaca
cgagggaggaggacctgcgCGAGGTGCTGAGAGGCGGCTACGAGCCCTTC
CAGGTGGACTTCCCTCGGAGTCGGAAGGGGAACCCGAAAGGCGAGGCGGT
GCTCAGGTTCAGGACCTACGACCAGCTGGTGGCGGCGATCGGTCGCCTGT
ACGGGCGGGACTCGCCCATGGATGAGGTCGAGAACCAGGCGCGATGGGcg
tcggcgggggaggggatgagctTCGACGACCCGGCCGggagcttggagga
ggagctggcgagGTTGCCACCCTCagcctcttccccgctctcGACCGAGA
CGGGAATGGGGCTGGACGCACTCTTTGACAGGCactggaaggaagagagg
ggtcccggggaggagggggggggggaggcggggatggaggggggcgaggc
cgccGCGTCGAAGCCTGGGGGGCTCGGGGTGGCAGAGCcaggggcaaagg
ggagcgggaaagatgtccaggaagaagaggaggagaaagaggaagaaagt
tACGCGGGAAGAGACGTCAATCCCTTCGCCATCCATCCGGAGGGCAAGTG
GGTGAAGATGCTGGTGGACACAGACACGACGCAGAAGATCATCAAGGGGG
GGCACATTCTCTCCTATCGCGCTCTGGTGCTCGTAGGCAACCTGAAAGGC
TGCGGAGGCTGGGGCGTGGGGAAAGGCGcgaccctggaggaggcgcagat
ACGGGCCTATAGGGCTGCCAAGAAAAACCTCATCCACATCGATCTCTACC
GCAACCGGTGCATCACCACCGACCTGTACGGGAAGCACAACAATTGCCGC
ATCTATATCCAGGCGGGTCAACCCAACCGACCACATAAGGAGGGGCGAAT
GATAAACGACATGCTGAGGATTATGGGTGTGGAGTgcggggaggcgagga
gcatCGGAAGAAGGAACCCCTACTCGGTGGTCAGGGCCTTGTTCCATGCG
ATAAGCAAGCACGAGGGTGTGGAAGCGCTctccaggaagagggggaggcg
ttTGATCAGTGTATCTAAAGCGCGTTACTTGGGCTTGTAATCATTGGAAA
TTAtggccagggggaggaggcctgggaaGAAAACATTCGCCGTCAAGCAA
GACTCCTGTGTTCATCGAGGCCTGGCACGAAACAGCGACTTGGAAAAGTG
GAAGTCGAAATGTAGTGTTTTTTTTTACTTTCTTTTAAATTTACTCTACA
CGCGCCAGACGTTCTTCACGAGAACCCACTCCCTTCCTAGTCATCCTCAT
CATCTTTTGCTGCCGGGGGGGGACCGCAGGGCTGTAGCATTTTCTCGAGG
AGCTGGTAGCGCACACGACCTACCGCGTCGTTCTGCGCCACTGCAATGTA
GGCAAGCTGGTCGTGATGACCCAAATGAGTAGCGTAGGTGTCCCGATGCT
GGTTCGTCAACCATTCGCTGTCGAGAAAAGGAACGTGAGCAGAATGAGAC
ATGCAACGACATGCACATGCAGCTTGCATCATCCCTTCTGTAACAGTCGA
AACcgcaaaaaaaa back to topCoding sequence (CDS) from alignment at CM002459.1:412614..416127+ >rna2451 ID=rna2451|Name=rna2451|organism=Nannochloropsis gaditana|type=CDS|length=2751bp|location=Sequence derived from alignment at CM002459.1:412614..416127+ (Nannochloropsis gaditana)
ATGATGGCGGTGGGGCGAGCgcgtagcagcagcagtctaGTTGGTATAGC
AAGATATAGCACATGGCTCCATCATCATCAGGCGCTCCAGGGTCAAACGT
GGAACATGTACACAAAGAGTGCAACACGTGCCAGTCGGCGGACGCCACAG
CAGCGATGGCTGAGCAGTCATCCAAAGGCAGCGAGCCTTGGGTACACATT
GCGCGTGGAGGGCCATTTCGATGAAGCCAAAGCCCAGGCATTGCGGCCAA
AGGACGTGGTAACCCTGTTCGGCGCCTTCGAGCCCTACAATATTGTCATG
CGCCCCCCCGGggccgtcggggggggggccaaGTATCAGGCGAAGAAGGG
CaactccctgcctccaccaccgcttGTTCTCGCCACATTTCAAGTCCCGA
GCCTTAAATACGCCCGGGAAATTGCCCACTCGTTCCATCATGATGAGAGC
TGGGGGGATCGCATCACGGTGcaccaggagcaggagactTTCCCGGTGTT
CATCTCGGGCTTGCCAGAGGGCGTATCAGGATCGGAGCTGAAGAAGCAGA
TTGATCGGGCAGGGGCGTCGGACCCCAAACAAAGACGTGTGATGGGGGGA
AGTGAACCGGCCTCCGAGTCGAAGGGTCAGTCCAAAAGCCTTCTGACAGA
GACGGCCATCGACGCTTACGACACCTACGCTGTCTTCCGATGCCCCGACA
AGTACTCGTCCATGGGGCTCTTGCAAGGCTCTTTCCAGCTAGCGCCGGTA
GGGCCGAAGGCTCGAGGCAacacgggggagaagagactaggggcgggcgc
ggagAATGGGGCCGGCGCTaccgaggcggaggcacagGCGGAAGGCAACg
caggagaaaggatggtggaggtggaggaagcggggcaggaggggcggggg
gaaggggatggggaggatgccCGCGGCGTCCTTAGCTACGCGGCTTGGAA
GACATACCCGGTGCGCGTGAACGGGCTGCCGGGAGACGcgaacgaggggg
aggtgatggcggtCTTTTCGAAATACATGCCCTACGATGTGGAGGTCCTG
CCCGTGGAGGCGTCGGAGGCCGCGGACGGGAATGAGGGCGGGACTCGGGG
GGCCTACCTGCGCTTTGCCCGGCGCATACAGGGGGTGGAGTGCGCGAGCG
AGATGCAGGACGTGAGCGTGCGCAACAATGTCCTGCAGGTGCGAAGGGCC
TGGGAGAAGGTCTACCCCCTGCTGATCGAGGCAGcttcgggggaggggaa
agttACCGCGGACGAGCTTGAGCAAGTGCTCGCCCctttgaagaggatga
aggactcgtccctcctcgacgccgagctcctggaggagggggcagcggcG
GTGATCCGGTTCGGGAGTCAGacaggcgcggaggaagggctgggcGTGTT
GGAGGCCGGcgcggggagcgggaggaggaaagtgcgGCCGGCGTGGAAGG
ACTTCCGGGTGGACGTAAGAAACCTGCCACTGGAGGTgacgcaggaggag
ctgcgcgAGATGGTTCACCTGACGACCCCCTCCAAAGTGGCGGTGTCCTT
GCCCGTGGGCGGCCGGTACCGGACGGGAAGTCTCTCCTTTACCAcgcggg
aagaggcagacCTGGCCTTCTCGCAGCTCTCGGGGACGGGCTTGCCGGAC
CTGAAGCTCCGGAAGGCGTGGGCCGTGTACCGGCTGAGGGTGAAGGGGCT
GCCCGCggacacgagggaggaggacctgcgCGAGGTGCTGAGAGGCGGCT
ACGAGCCCTTCCAGGTGGACTTCCCTCGGAGTCGGAAGGGGAACCCGAAA
GGCGAGGCGGTGCTCAGGTTCAGGACCTACGACCAGCTGGTGGCGGCGAT
CGGTCGCCTGTACGGGCGGGACTCGCCCATGGATGAGGTCGAGAACCAGG
CGCGATGGGcgtcggcgggggaggggatgagctTCGACGACCCGGCCGgg
agcttggaggaggagctggcgagGTTGCCACCCTCagcctcttccccgct
ctcGACCGAGACGGGAATGGGGCTGGACGCACTCTTTGACAGGCactgga
aggaagagaggggtcccggggaggagggggggggggaggcggggatggag
gggggcgaggccgccGCGTCGAAGCCTGGGGGGCTCGGGGTGGCAGAGCc
aggggcaaaggggagcgggaaagatgtccaggaagaagaggaggagaaag
aggaagaaagttACGCGGGAAGAGACGTCAATCCCTTCGCCATCCATCCG
GAGGGCAAGTGGGTGAAGATGCTGGTGGACACAGACACGACGCAGAAGAT
CATCAAGGGGGGGCACATTCTCTCCTATCGCGCTCTGGTGCTCGTAGGCA
ACCTGAAAGGCTGCGGAGGCTGGGGCGTGGGGAAAGGCGcgaccctggag
gaggcgcagatACGGGCCTATAGGGCTGCCAAGAAAAACCTCATCCACAT
CGATCTCTACCGCAACCGGTGCATCACCACCGACCTGTACGGGAAGCACA
ACAATTGCCGCATCTATATCCAGGCGGGTCAACCCAACCGACCACATAAG
GAGGGGCGAATGATAAACGACATGCTGAGGATTATGGGTGTGGAGTgcgg
ggaggcgaggagcatCGGAAGAAGGAACCCCTACTCGGTGGTCAGGGCCT
TGTTCCATGCGATAAGCAAGCACGAGGGTGTGGAAGCGCTctccaggaag
agggggaggcgttTGATCAGTGTATCTAAAGCGCGTTACTTGGGCTTGTA
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