EWM28236.1, cds2443 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28236.1 vs. NCBI_GenBank
Match: gi|585110581|gb|EWM28236.1| (30s ribosomal protein s5 [Nannochloropsis gaditana]) HSP 1 Score: 1865.89 bits (4832), Expect = 0.000e+0 Identity = 916/916 (100.00%), Postives = 916/916 (100.00%), Query Frame = 0 Query: 1 MMAVGRARSSSSLVGIARYSTWLHHHQALQGQTWNMYTKSATRASRRTPQQRWLSSHPKAASLGYTLRVEGHFDEAKAQALRPKDVVTLFGAFEPYNIVMRPPGAVGGGAKYQAKKGNSLPPPPLVLATFQVPSLKYAREIAHSFHHDESWGDRITVHQEQETFPVFISGLPEGVSGSELKKQIDRAGASDPKQRRVMGGSEPASESKGQSKSLLTETAIDAYDTYAVFRCPDKYSSMGLLQGSFQLAPVGPKARGNTGEKRLGAGAENGAGATEAEAQAEGNAGERMVEVEEAGQEGRGEGDGEDARGVLSYAAWKTYPVRVNGLPGDANEGEVMAVFSKYMPYDVEVLPVEASEAADGNEGGTRGAYLRFARRIQGVECASEMQDVSVRNNVLQVRRAWEKVYPLLIEAASGEGKVTADELEQVLAPLKRMKDSSLLDAELLEEGAAAVIRFGSQTGAEEGLGVLEAGAGSGRRKVRPAWKDFRVDVRNLPLEVTQEELREMVHLTTPSKVAVSLPVGGRYRTGSLSFTTREEADLAFSQLSGTGLPDLKLRKAWAVYRLRVKGLPADTREEDLREVLRGGYEPFQVDFPRSRKGNPKGEAVLRFRTYDQLVAAIGRLYGRDSPMDEVENQARWASAGEGMSFDDPAGSLEEELARLPPSASSPLSTETGMGLDALFDRHWKEERGPGEEGGGEAGMEGGEAAASKPGGLGVAEPGAKGSGKDVQEEEEEKEEESYAGRDVNPFAIHPEGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAKKNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSKARYLGL 916 MMAVGRARSSSSLVGIARYSTWLHHHQALQGQTWNMYTKSATRASRRTPQQRWLSSHPKAASLGYTLRVEGHFDEAKAQALRPKDVVTLFGAFEPYNIVMRPPGAVGGGAKYQAKKGNSLPPPPLVLATFQVPSLKYAREIAHSFHHDESWGDRITVHQEQETFPVFISGLPEGVSGSELKKQIDRAGASDPKQRRVMGGSEPASESKGQSKSLLTETAIDAYDTYAVFRCPDKYSSMGLLQGSFQLAPVGPKARGNTGEKRLGAGAENGAGATEAEAQAEGNAGERMVEVEEAGQEGRGEGDGEDARGVLSYAAWKTYPVRVNGLPGDANEGEVMAVFSKYMPYDVEVLPVEASEAADGNEGGTRGAYLRFARRIQGVECASEMQDVSVRNNVLQVRRAWEKVYPLLIEAASGEGKVTADELEQVLAPLKRMKDSSLLDAELLEEGAAAVIRFGSQTGAEEGLGVLEAGAGSGRRKVRPAWKDFRVDVRNLPLEVTQEELREMVHLTTPSKVAVSLPVGGRYRTGSLSFTTREEADLAFSQLSGTGLPDLKLRKAWAVYRLRVKGLPADTREEDLREVLRGGYEPFQVDFPRSRKGNPKGEAVLRFRTYDQLVAAIGRLYGRDSPMDEVENQARWASAGEGMSFDDPAGSLEEELARLPPSASSPLSTETGMGLDALFDRHWKEERGPGEEGGGEAGMEGGEAAASKPGGLGVAEPGAKGSGKDVQEEEEEKEEESYAGRDVNPFAIHPEGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAKKNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSKARYLGL Sbjct: 1 MMAVGRARSSSSLVGIARYSTWLHHHQALQGQTWNMYTKSATRASRRTPQQRWLSSHPKAASLGYTLRVEGHFDEAKAQALRPKDVVTLFGAFEPYNIVMRPPGAVGGGAKYQAKKGNSLPPPPLVLATFQVPSLKYAREIAHSFHHDESWGDRITVHQEQETFPVFISGLPEGVSGSELKKQIDRAGASDPKQRRVMGGSEPASESKGQSKSLLTETAIDAYDTYAVFRCPDKYSSMGLLQGSFQLAPVGPKARGNTGEKRLGAGAENGAGATEAEAQAEGNAGERMVEVEEAGQEGRGEGDGEDARGVLSYAAWKTYPVRVNGLPGDANEGEVMAVFSKYMPYDVEVLPVEASEAADGNEGGTRGAYLRFARRIQGVECASEMQDVSVRNNVLQVRRAWEKVYPLLIEAASGEGKVTADELEQVLAPLKRMKDSSLLDAELLEEGAAAVIRFGSQTGAEEGLGVLEAGAGSGRRKVRPAWKDFRVDVRNLPLEVTQEELREMVHLTTPSKVAVSLPVGGRYRTGSLSFTTREEADLAFSQLSGTGLPDLKLRKAWAVYRLRVKGLPADTREEDLREVLRGGYEPFQVDFPRSRKGNPKGEAVLRFRTYDQLVAAIGRLYGRDSPMDEVENQARWASAGEGMSFDDPAGSLEEELARLPPSASSPLSTETGMGLDALFDRHWKEERGPGEEGGGEAGMEGGEAAASKPGGLGVAEPGAKGSGKDVQEEEEEKEEESYAGRDVNPFAIHPEGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAKKNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSKARYLGL 916
BLAST of EWM28236.1 vs. NCBI_GenBank
Match: gi|553181524|ref|XP_005853580.1| (serine threonine protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295477|gb|EKU22776.1| serine threonine protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 712.99 bits (1839), Expect = 0.000e+0 Identity = 355/356 (99.72%), Postives = 356/356 (100.00%), Query Frame = 0 Query: 303 DGEDARGVLSYAAWKTYPVRVNGLPGDANEGEVMAVFSKYMPYDVEVLPVEASEAADGNEGGTRGAYLRFARRIQGVECASEMQDVSVRNNVLQVRRAWEKVYPLLIEAASGEGKVTADELEQVLAPLKRMKDSSLLDAELLEEGAAAVIRFGSQTGAEEGLGVLEAGAGSGRRKVRPAWKDFRVDVRNLPLEVTQEELREMVHLTTPSKVAVSLPVGGRYRTGSLSFTTREEADLAFSQLSGTGLPDLKLRKAWAVYRLRVKGLPADTREEDLREVLRGGYEPFQVDFPRSRKGNPKGEAVLRFRTYDQLVAAIGRLYGRDSPMDEVENQARWASAGEGMSFDDPAGSLEEELAR 658 DGEDARGVLSYAAWKTYPVRVNGLPGDANEGEVMAVFSKYMPYDVEVLPVEASEAADGNEGGTRGAYLRFARRIQGVECASEMQDVSVRNNVLQVRRAWEKVYPLLIEAASGEGKVTADELEQVLAPLKRMKDSSLLDAELL+EGAAAVIRFGSQTGAEEGLGVLEAGAGSGRRKVRPAWKDFRVDVRNLPLEVTQEELREMVHLTTPSKVAVSLPVGGRYRTGSLSFTTREEADLAFSQLSGTGLPDLKLRKAWAVYRLRVKGLPADTREEDLREVLRGGYEPFQVDFPRSRKGNPKGEAVLRFRTYDQLVAAIGRLYGRDSPMDEVENQARWASAGEGMSFDDPAGSLEEELAR Sbjct: 1 DGEDARGVLSYAAWKTYPVRVNGLPGDANEGEVMAVFSKYMPYDVEVLPVEASEAADGNEGGTRGAYLRFARRIQGVECASEMQDVSVRNNVLQVRRAWEKVYPLLIEAASGEGKVTADELEQVLAPLKRMKDSSLLDAELLKEGAAAVIRFGSQTGAEEGLGVLEAGAGSGRRKVRPAWKDFRVDVRNLPLEVTQEELREMVHLTTPSKVAVSLPVGGRYRTGSLSFTTREEADLAFSQLSGTGLPDLKLRKAWAVYRLRVKGLPADTREEDLREVLRGGYEPFQVDFPRSRKGNPKGEAVLRFRTYDQLVAAIGRLYGRDSPMDEVENQARWASAGEGMSFDDPAGSLEEELAR 356 HSP 2 Score: 380.563 bits (976), Expect = 1.321e-113 Identity = 189/191 (98.95%), Postives = 189/191 (98.95%), Query Frame = 0 Query: 126 VLATFQVPSLKYAREIAHSFHHDESWGDRITVHQEQETFPVFISGLPEGVSGSELKKQIDRAGASDPKQRRVMGGSEPASESKGQSKSLLTETAIDAYDTYAVFRCPDKYSSMGLLQGSFQLAPVGPKARGNTGEKRLGAGAENGAGATEAEAQAEGNAGERMVEVEEAGQEGRGEGDGEDARGVLSYAAW 316 VLATFQVPSLKYAREIAHSFHHDESWGDRITVHQEQETFPVFISGLPEGVSGSELKKQIDRAGASDPKQRRVMGGSEPASESKGQSKSLLTETAIDAYDTYAVFRCPDKYSSMGLLQGSFQLAPVGPKARGNTGEKR GAGAENGAGATEAEAQAEGNAGERMVEVEEAGQEGRGEGD EDARGVLSYAAW Sbjct: 369 VLATFQVPSLKYAREIAHSFHHDESWGDRITVHQEQETFPVFISGLPEGVSGSELKKQIDRAGASDPKQRRVMGGSEPASESKGQSKSLLTETAIDAYDTYAVFRCPDKYSSMGLLQGSFQLAPVGPKARGNTGEKRQGAGAENGAGATEAEAQAEGNAGERMVEVEEAGQEGRGEGDVEDARGVLSYAAW 559
BLAST of EWM28236.1 vs. NCBI_GenBank
Match: gi|298709705|emb|CBJ31510.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 141.739 bits (356), Expect = 6.006e-33 Identity = 67/162 (41.36%), Postives = 104/162 (64.20%), Query Frame = 0 Query: 751 EGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAK--KNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSK 910 +G+W ++LV TD K +KGG + YRALV VGNL G GG+ +GK T A A R AK NL++++ Y+ + DL GKHN ++YI + P + G++ D+L MG+ G + IGRRN YS++ A+F A++KH G+E+++R RG+R++S+ + Sbjct: 202 QGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQR 363
BLAST of EWM28236.1 vs. NCBI_GenBank
Match: gi|1210518988|dbj|GAX22149.1| (small subunit ribosomal protein S5 [Fistulifera solaris]) HSP 1 Score: 140.969 bits (354), Expect = 1.888e-32 Identity = 72/185 (38.92%), Postives = 113/185 (61.08%), Query Frame = 0 Query: 727 QEEEEEKEEESYAGRDVNPFAIHPEGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAKKNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSKA 911 Q+++EE + + D N A G+W +MLV D T K+ +GG + SYRALV+ GNL GCGG+G+GK A A R K+N+ +D Y+ +T+DL GK N+C++Y+++ + +I ++L+ G+ A+S G RNPY+V RA F A+ HE +E ++ KRG+RL+S+ +A Sbjct: 216 QDDDEEGDFDPEVFLDPNQLA---HGEWSEMLVTVDRTTKLWRGGRLESYRALVIGGNLNGCGGFGIGKSKDPINAVAVASRKCKRNIFFVDRYQGNGLTSDLAGKQNSCKVYLRSTDDG--LRGNHLIREILKRFGITNCVAKSHGNRNPYNVTRATFKALMTHESIEDIALKRGKRLVSIDRA 395
BLAST of EWM28236.1 vs. NCBI_GenBank
Match: gi|1210517931|dbj|GAX23188.1| (small subunit ribosomal protein S5 [Fistulifera solaris]) HSP 1 Score: 140.198 bits (352), Expect = 4.084e-32 Identity = 72/185 (38.92%), Postives = 113/185 (61.08%), Query Frame = 0 Query: 727 QEEEEEKEEESYAGRDVNPFAIHPEGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAKKNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSKA 911 Q+++EE + + D N A G+W +MLV D T K+ +GG + SYRALV+ GNL GCGG+G+GK A A R K+N+ +D Y+ +T+DL GK N+C++Y+++ + +I ++L+ G+ A+S G RNPY+V RA F A+ HE +E ++ KRG+RL+S+ +A Sbjct: 216 QDDDEEGDFDPEVFLDPNQLA---HGEWSEMLVTVDRTTKLWRGGRLESYRALVIGGNLNGCGGFGIGKSKDPINAVAVASRKCKRNIFFVDRYQGNGLTSDLAGKQNSCKVYLRSTDDG--LRGNHLIREILKRFGITNCVAKSHGNRNPYNVTRATFKALMTHESIEDIALKRGKRLVSIDRA 395
BLAST of EWM28236.1 vs. NCBI_GenBank
Match: gi|298709702|emb|CBJ31507.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 135.191 bits (339), Expect = 2.357e-31 Identity = 66/162 (40.74%), Postives = 103/162 (63.58%), Query Frame = 0 Query: 751 EGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAK--KNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSK 910 +G+W ++LV TD K +KGG + YRALV VGNL G GG+ +GK T A A R AK NL++++ Y+ + DL GKHN ++YI + + G++ D+L MG+ G + IGRRN YS++ A+F A++KH G+E+++R RG+R++S+ + Sbjct: 141 QGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWS-------RAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQR 295
BLAST of EWM28236.1 vs. NCBI_GenBank
Match: gi|1072223633|gb|OEU08388.1| (30S ribosomal protein S5 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 128.642 bits (322), Expect = 1.138e-30 Identity = 64/160 (40.00%), Postives = 104/160 (65.00%), Query Frame = 0 Query: 757 MLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAKKNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSKARYLGL 916 ML+ TD K+ +GG ++S+RALV+ GN KGCGG+G+GK E+A A R AK+N+ +D +RN IT DL G+ N+C++ ++ N + + ++L++ G+ A++ G RN Y+VVRA F A+ HE ++ ++ KRG RL+++ KA+ LG+ Sbjct: 1 MLIRTDRVSKMWRGGRVVSFRALVIGGNTKGCGGFGLGKAFEPEDAVEIACRMAKRNIFFVDRFRNMTITRDLVGRQNSCKVQLRV--TNNGLRGNPLCCEILKLFGITNVVAKAHGSRNHYNVVRATFKALLTHESLDDIAMKRGIRLVNLEKAKRLGI 158
BLAST of EWM28236.1 vs. NCBI_GenBank
Match: gi|219110018|ref|XP_002176761.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411296|gb|EEC51224.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 122.865 bits (307), Expect = 2.091e-26 Identity = 69/184 (37.50%), Postives = 107/184 (58.15%), Query Frame = 0 Query: 728 EEEEEKEEESYAGRDVNPFAIHPEGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAKKNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSKA 911 ++ + EEE D N H G+W +ML+ T K+ +GG + SYRALV+ GN GCGG+G+GK A A R KKN+ +D Y+N IT DL GK N+C + + + N H ++ ++L+ G+ ++ G RNP++VVRA F A+ HE +E ++ KRG+R++S+ +A Sbjct: 197 QKSDMNEEEPEVRLDPNQ---HVHGEWSEMLITVGRTTKLWRGGRLESYRALVIGGNTNGCGGFGIGKSWDPVLAVDVAGRNCKKNIFFVDRYQNDGITRDLVGKQNSCIAKVMS-RDNGLHGNP-LMREILKRFGITNASCKAHGNRNPFNVVRATFKALMTHESLEDIALKRGKRILSLDRA 375
BLAST of EWM28236.1 vs. NCBI_GenBank
Match: gi|397596461|gb|EJK56771.1| (hypothetical protein THAOC_23280 [Thalassiosira oceanica]) HSP 1 Score: 122.865 bits (307), Expect = 1.266e-25 Identity = 74/196 (37.76%), Postives = 115/196 (58.67%), Query Frame = 0 Query: 725 DVQEEEEEKEEESYA----GRDVNPFAIHPEGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAKKNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSKARYLGL 916 D ++E EEK +E G D N A G W + V D QK+ +GG + YRALV+ GN G G+G+GK + EA I+A + K+N+ ++D Y N +T DL G+HN+C++ I+A P+ +I ++L+ G+ +S G RNPY+VV A F A+ E +E ++ KRG++LI++ +AR LG+ Sbjct: 325 DHEKEREEKPDEILEMIKNGEDPNQEAF---GPWSECTVKVDRVQKVERGGTTVRYRALVIGGNGNGAAGFGIGKALSPNEAIIKAGKHCKRNVFYVDRYLNSGVTYDLAGRHNSCKVQIRAVTPDYGLHGHPLICEILKFSGISDASTKSHGNRNPYNVVYATFKALMTQESLEEVALKRGKKLINMQRARRLGI 517
BLAST of EWM28236.1 vs. NCBI_GenBank
Match: gi|676382031|ref|XP_009034294.1| (hypothetical protein AURANDRAFT_22111 [Aureococcus anophagefferens] >gi|323454834|gb|EGB10703.1| hypothetical protein AURANDRAFT_22111 [Aureococcus anophagefferens]) HSP 1 Score: 114.005 bits (284), Expect = 5.274e-25 Identity = 66/162 (40.74%), Postives = 99/162 (61.11%), Query Frame = 0 Query: 750 PEGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAKKNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSKA 911 PEG+W + +V D QK+++GG I+ YRALV VGNL G GG+ GKG + ++A RA R AK +L +D +R+ + D+ GKHNNC + I A P + G + ++ +G ++ GRR+PYS V A F A++ VE ++RKRGRR++ + A Sbjct: 41 PEGRWAETIVKIDRVQKVVRGGTIMRYRALVAVGNLMGAGGFAFGKGHSPQDAVARASRRAKTDLRFVDRHRDVALAHDVRGKHNNCTVDIYAVPPGKGMVGGALGRAIMTQLGFSSFTIKARGRRSPYSYVAATFDALANLASVEDIARKRGRRILEIEHA 202 The following BLAST results are available for this feature:
BLAST of EWM28236.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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