EWM28173.1, cds2440 (CDS) Nannochloropsis gaditana

Overview
NameEWM28173.1
Unique Namecds2440
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:408563..408605 -
Alignment locationCM002459.1:407975..408264 -
Alignment locationCM002459.1:407639..407884 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28173.1
Productgtp-binding protein sar1
Orig transcript idgnl|cribi|Naga_100004g84.9104.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:408563..408605 -
CM002459.1supercontigCM002459.1:407975..408264 -
CM002459.1supercontigCM002459.1:407639..407884 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0005783endoplasmic reticulum
GO:0016020membrane
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR024156Small_GTPase_ARF
IPR006687Small_GTPase_SAR1
IPR006689Small_GTPase_ARF/SAR
Homology
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|585110518|gb|EWM28173.1| (gtp-binding protein sar1 [Nannochloropsis gaditana])

HSP 1 Score: 397.897 bits (1021), Expect = 2.306e-140
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query:    1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192
            MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL
Sbjct:    1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192          
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|553181537|ref|XP_005853584.1| (GTP-binding protein SAR1 [Nannochloropsis gaditana CCMP526] >gi|422295481|gb|EKU22780.1| GTP-binding protein SAR1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 390.578 bits (1002), Expect = 2.520e-137
Identity = 192/202 (95.05%), Postives = 192/202 (95.05%), Query Frame = 0
Query:    1 MFLLDWVYSALASL----------GLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192
            MFLLDWVYSALASL          GLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL
Sbjct:    1 MFLLDWVYSALASLVLSAPSVHLAGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 202          
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|1210517417|dbj|GAX23674.1| (GTP-binding protein SAR1 [Fistulifera solaris] >gi|1210526137|dbj|GAX15055.1| GTP-binding protein SAR1 [Fistulifera solaris])

HSP 1 Score: 329.717 bits (844), Expect = 2.576e-113
Identity = 156/192 (81.25%), Postives = 176/192 (91.67%), Query Frame = 0
Query:    1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192
            MFLLDW YSALASLGLYHK+AKILFLGLDNAGKTTLLHMLKENRVQVHQPT+HPNTDELIIG I+FKTFDLGGHETARRLW+DY TTVDGVV++VD++D+ERFPEAK ELD+LLTS+EL  VPFLVLGNKIDVP A SEE+L+YALG+ +TYGKD  G +    VRPIELYMCSV+++MGYADGFKWL+QFL
Sbjct:    1 MFLLDWWYSALASLGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNTDELIIGNIKFKTFDLGGHETARRLWQDYFTTVDGVVYLVDSIDRERFPEAKAELDALLTSEELQDVPFLVLGNKIDVPTAASEEELKYALGLMDTYGKD-KGPDANGTVRPIELYMCSVLRKMGYADGFKWLSQFL 191          
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|219118115|ref|XP_002179839.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408892|gb|EEC48825.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 327.405 bits (838), Expect = 1.662e-112
Identity = 155/192 (80.73%), Postives = 175/192 (91.15%), Query Frame = 0
Query:    1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192
            MFLLDW YSALASLGLYHK+AKILFLGLDNAGKTTLLHMLKENRVQVH PT+HPNTDELIIG I+FKTFDLGGHETARRLW+DY TTVDGVV++VDA+D+ RFPEAK+ELD+LLTS+EL  VPFLVLGNKID+P A SEE+L+YALG+ +TYGKD  G +    VRPIELYMCSVI+RMGY+DGFKWL+QFL
Sbjct:    1 MFLLDWWYSALASLGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQVHVPTLHPNTDELIIGNIKFKTFDLGGHETARRLWQDYFTTVDGVVYLVDAIDRGRFPEAKKELDALLTSEELQDVPFLVLGNKIDMPTAASEEELKYALGLMDTYGKD-KGPDSSSSVRPIELYMCSVIRRMGYSDGFKWLSQFL 191          
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|298711080|emb|CBJ26475.1| (Sar1A, Ras superfamily GTPase [Ectocarpus siliculosus])

HSP 1 Score: 324.709 bits (831), Expect = 2.088e-111
Identity = 151/192 (78.65%), Postives = 174/192 (90.62%), Query Frame = 0
Query:    1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192
            MFL+DW Y  LASLG YHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPT+HPN DELI+GK+RFKTFDLGGHETAR+LWKDY TTVDGVVF+VDALD++RFPEAK+ELDSLLT + L  VPFLVLGNKID+  AVSE++LRYA+G+ +T+GK +S  +  PGVRPIELYMCSV+KRMGY+DGFKWL+QF+
Sbjct:    1 MFLVDWFYGILASLGFYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTLHPNQDELIVGKVRFKTFDLGGHETARKLWKDYFTTVDGVVFLVDALDRQRFPEAKKELDSLLTDENLQTVPFLVLGNKIDMQAAVSEDELRYAMGLYDTFGK-ASKPDSNPGVRPIELYMCSVVKRMGYSDGFKWLSQFI 191          
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|695390903|ref|XP_009519860.1| (COPII GTPase subunit SAR1 [Phytophthora sojae] >gi|348684757|gb|EGZ24572.1| COPII GTPase subunit SAR1 [Phytophthora sojae])

HSP 1 Score: 322.398 bits (825), Expect = 2.093e-110
Identity = 146/192 (76.04%), Postives = 173/192 (90.10%), Query Frame = 0
Query:    1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192
            MF+ DW Y+ L  LGLYHK+AKILFLGLDNAGKTTLLHMLK++RV VH+PT+HPN++ELIIGK+R +TFDLGGHETARRLW+DY  TVDGVVF+VDALD+ERFPE+KRELD+LL  DELA+VPFLVLGNKIDVPRA SEE+LR ALG+  T+GK+SS G+K   +RPIELYMCSV++RMGYADGF+W+AQFL
Sbjct:    1 MFVFDWFYNVLGYLGLYHKNAKILFLGLDNAGKTTLLHMLKDDRVAVHEPTLHPNSEELIIGKLRLRTFDLGGHETARRLWRDYFATVDGVVFVVDALDRERFPESKRELDTLLGYDELANVPFLVLGNKIDVPRAASEEELRSALGLYETFGKESSSGDKDASIRPIELYMCSVVRRMGYADGFRWMAQFL 192          
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|1072234216|gb|OEU18946.1| (small GTP-binding protein sar1 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 318.161 bits (814), Expect = 8.818e-109
Identity = 151/191 (79.06%), Postives = 171/191 (89.53%), Query Frame = 0
Query:    2 FLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192
            F LDW+YSALASLGLYHK+AKILFLGLDNAGKTTLLHMLKENRVQVH PT+HPNTDELIIG I+FKTFDLGGHETARRLW DY TTVDGVV+IVD++D+ RFPEAK+ELD+LLT++EL  VPFLVLGNKID+P A SEE+L++ALG+ +TYGKD   G    G RPIELYMCSVI+RMGYADGFKWL+ FL
Sbjct:    4 FSLDWMYSALASLGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQVHVPTLHPNTDELIIGNIKFKTFDLGGHETARRLWADYFTTVDGVVYIVDSIDRGRFPEAKKELDALLTTEELQDVPFLVLGNKIDMPTAASEEELKFALGLGDTYGKDK--GPDGTGTRPIELYMCSVIRRMGYADGFKWLSAFL 192          
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|223996269|ref|XP_002287808.1| (arf-type small G protein [Thalassiosira pseudonana CCMP1335] >gi|220976924|gb|EED95251.1| arf-type small G protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 317.39 bits (812), Expect = 2.093e-108
Identity = 146/192 (76.04%), Postives = 173/192 (90.10%), Query Frame = 0
Query:    1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192
            MFL++W Y  LASLGLYHK+AKILFLGLDNAGKTTLLHMLKENRVQ H PT+HPNTDELI+G+++ KTFDLGGHETARRLW+DY TTVDGVV++VDA+D+ RFPEAKRELD+LLTSDEL  VPFLVLGNKID+P A SEE+L+YALG+ +TYGKD+   +K  GVRPIE++MCSV++RMGY DGF+WL+QFL
Sbjct:    1 MFLVNWFYDTLASLGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQAHVPTLHPNTDELIVGQLKLKTFDLGGHETARRLWQDYFTTVDGVVYLVDAIDRGRFPEAKRELDALLTSDELVDVPFLVLGNKIDMPSAASEEELKYALGLLDTYGKDTK-PDKNSGVRPIEVFMCSVVRRMGYKDGFQWLSQFL 191          
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|301118623|ref|XP_002907039.1| (GTP-binding protein SAR1 [Phytophthora infestans T30-4] >gi|301121987|ref|XP_002908720.1| GTP-binding protein SAR1 [Phytophthora infestans T30-4] >gi|675201731|ref|XP_008909750.1| hypothetical protein PPTG_14584 [Phytophthora parasitica INRA-310] >gi|23394386|gb|AAN31482.1| GTP binding protein [Phytophthora infestans] >gi|262099482|gb|EEY57534.1| GTP-binding protein SAR1 [Phytophthora infestans T30-4] >gi|262105551|gb|EEY63603.1| GTP-binding protein SAR1 [Phytophthora infestans T30-4] >gi|566017497|gb|ETI40408.1| hypothetical protein F443_14183 [Phytophthora parasitica P1569] >gi|567954879|gb|ETK80512.1| hypothetical protein L915_13826 [Phytophthora parasitica] >gi|567983546|gb|ETL33936.1| hypothetical protein L916_13723 [Phytophthora parasitica] >gi|568013033|gb|ETL87210.1| hypothetical protein L917_13529 [Phytophthora parasitica] >gi|568043097|gb|ETM40398.1| hypothetical protein L914_13636 [Phytophthora parasitica] >gi|568089976|gb|ETN04813.1| hypothetical protein PPTG_14584 [Phytophthora parasitica INRA-310] >gi|570321165|gb|ETO69113.1| hypothetical protein F444_14204 [Phytophthora parasitica P1976] >gi|570944973|gb|ETP10230.1| hypothetical protein F441_14083 [Phytophthora parasitica CJ01A1] >gi|570976539|gb|ETP38327.1| hypothetical protein F442_14025 [Phytophthora parasitica P10297] >gi|970632741|gb|KUF78827.1| GTP binding protein [Phytophthora nicotianae] >gi|970652734|gb|KUF91342.1| PLAC8 family protein [Phytophthora nicotianae])

HSP 1 Score: 314.694 bits (805), Expect = 2.043e-107
Identity = 144/192 (75.00%), Postives = 172/192 (89.58%), Query Frame = 0
Query:    1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192
            MF+ DW Y+ L  LGLYHK+AKILFLGLDNAGKTTLLHMLK++RV VH+PT+HPN++ELIIGK+R +TFDLGGHETARRLW+DY  TVDGVVF+VDALD+ERFPE+KRELD+LL  DELA+VPFLVLGNKIDVPRA SE++LR ALG+  TYGK++  G+K   +RPIELYMCSV++RMGYADGF+W+AQFL
Sbjct:    1 MFVFDWFYNVLGYLGLYHKNAKILFLGLDNAGKTTLLHMLKDDRVAVHEPTLHPNSEELIIGKLRLRTFDLGGHETARRLWRDYFATVDGVVFVVDALDRERFPESKRELDTLLGYDELANVPFLVLGNKIDVPRAASEDELRSALGLYETYGKEAR-GDKDASIRPIELYMCSVVRRMGYADGFRWMAQFL 191          
BLAST of EWM28173.1 vs. NCBI_GenBank
Match: gi|397607007|gb|EJK59511.1| (hypothetical protein THAOC_20252 [Thalassiosira oceanica])

HSP 1 Score: 314.309 bits (804), Expect = 2.692e-107
Identity = 145/192 (75.52%), Postives = 172/192 (89.58%), Query Frame = 0
Query:    1 MFLLDWVYSALASLGLYHKSAKILFLGLDNAGKTTLLHMLKENRVQVHQPTIHPNTDELIIGKIRFKTFDLGGHETARRLWKDYLTTVDGVVFIVDALDQERFPEAKRELDSLLTSDELAHVPFLVLGNKIDVPRAVSEEQLRYALGMQNTYGKDSSGGEKQPGVRPIELYMCSVIKRMGYADGFKWLAQFL 192
            MFL++W Y  LASLGLYHK+AKILFLGLDNAGKTTLLHMLKENRVQ H PT+HPNTDELI+G+++ KTFDLGGHETARRLW+DY TTVDGVV++VDA+D+ RFPEAK+ELD+LLTSDEL  VPFLVLGNKID+P A SEE+L+YALG+ +TYGKD+   +K  GVRPIE++MCSV++RMGY DGF WL+QFL
Sbjct:    1 MFLVNWFYDTLASLGLYHKNAKILFLGLDNAGKTTLLHMLKENRVQAHVPTLHPNTDELIVGQLKLKTFDLGGHETARRLWQDYFTTVDGVVYLVDAIDRGRFPEAKKELDALLTSDELTDVPFLVLGNKIDMPSAASEEELKYALGLLDTYGKDTK-PDKNSGVRPIEVFMCSVVRRMGYKDGFLWLSQFL 191          
The following BLAST results are available for this feature:
BLAST of EWM28173.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110518|gb|EWM28173.1|2.306e-140100.00gtp-binding protein sar1 [Nannochloropsis gaditana... [more]
gi|553181537|ref|XP_005853584.1|2.520e-13795.05GTP-binding protein SAR1 [Nannochloropsis gaditana... [more]
gi|1210517417|dbj|GAX23674.1|2.576e-11381.25GTP-binding protein SAR1 [Fistulifera solaris] >gi... [more]
gi|219118115|ref|XP_002179839.1|1.662e-11280.73predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|298711080|emb|CBJ26475.1|2.088e-11178.65Sar1A, Ras superfamily GTPase [Ectocarpus siliculo... [more]
gi|695390903|ref|XP_009519860.1|2.093e-11076.04COPII GTPase subunit SAR1 [Phytophthora sojae] >gi... [more]
gi|1072234216|gb|OEU18946.1|8.818e-10979.06small GTP-binding protein sar1 [Fragilariopsis cyl... [more]
gi|223996269|ref|XP_002287808.1|2.093e-10876.04arf-type small G protein [Thalassiosira pseudonana... [more]
gi|301118623|ref|XP_002907039.1|2.043e-10775.00GTP-binding protein SAR1 [Phytophthora infestans T... [more]
gi|397607007|gb|EJK59511.1|2.692e-10775.52hypothetical protein THAOC_20252 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2448rna2448Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications