EWM28147.1, cds2435 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|585110492|gb|EWM28147.1| (hypothetical protein Naga_100004g78 [Nannochloropsis gaditana]) HSP 1 Score: 501.13 bits (1289), Expect = 1.874e-179 Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0 Query: 1 MADRKACGWRTAVGGVAVALAIVNQACAFVRPAFLHASTNVIHSVARDQVREKGVRTVRTRGLSSAQLQDGMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFEQVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDEDD 243 MADRKACGWRTAVGGVAVALAIVNQACAFVRPAFLHASTNVIHSVARDQVREKGVRTVRTRGLSSAQLQDGMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFEQVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDEDD Sbjct: 1 MADRKACGWRTAVGGVAVALAIVNQACAFVRPAFLHASTNVIHSVARDQVREKGVRTVRTRGLSSAQLQDGMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFEQVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDEDD 243
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|219112745|ref|XP_002178124.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411009|gb|EEC50938.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 134.806 bits (338), Expect = 1.101e-35 Identity = 73/186 (39.25%), Postives = 108/186 (58.06%), Query Frame = 0 Query: 63 LSSAQLQDG--MHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGE--HDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFE---QVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDE 241 LS+ +G +HG S FL ++QL D PRI+ +AG YPG+T +E S + G+W+Y+FSDP+GPQVGTVA S LV C DPV +IA + ++G+DL E ++ +VLVDR + F F P+ V++R + ++P G +LG+V V +P+ K+G+ME DE Sbjct: 8 LSATATDNGGSIHGQNSCFLPLRQLDQDYYAPRIVQIAGAYPGLTKEEFYGVQSEEAAEVGQWSYDFSDPEGPQVGTVAMDGSELVSFCPDPVAIIAEHSSVGVDLPKEITEPVDLIVLVDRSRKGFSERTFLVVDTPEEGVLIRAYGAKVEIPDGSEILGQVLLVQIPWLPSMAPTKTGFMEADE 193
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|223995713|ref|XP_002287530.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976646|gb|EED94973.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 128.257 bits (321), Expect = 1.184e-32 Identity = 81/237 (34.18%), Postives = 125/237 (52.74%), Query Frame = 0 Query: 12 AVGGVAVALAIVNQACAFVRPAFLHASTNVIHSVARDQVREKGVRTVRTRGLSSAQLQDGMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGE--HDIEAMVLVDRGDRFFQTNKFYAF--AAPDGSVVMRWF---EQVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDE 241 AV A + + AF PAF + V+ D+ T T L+ + +HG S FL + Q + + PR++ +AG YPG+TA+E +A TS P G+WAY+F+DP+GPQ+GTVA P T V+ DPVV+IA + LG+ L + ++ +VL DR R F KF+ F G + + F +++P +LG+V +V +P+ + KSG+ E D+ Sbjct: 10 AVAITATTSTLTSPCHAFATPAFTTSRRAVL-----DKTSRASPATASTTRLN--EKTGNLHGESSCFLPLLQNDDEYIAPRVVQIAGAYPGVTAEEFLAVTSEPPAELGQWAYDFTDPNGPQMGTVALPGMTSVYETDDPVVIIAEHPTLGVTLHEKVVDPVDLVVLCDRSKRTFAERKFFVFDDGNKGGELTIGAFTSKDEIPESVTILGQVTFVQIPWLPMMQKKKSGFSEDDD 239
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|1072230593|gb|OEU15326.1| (hypothetical protein FRACYDRAFT_240009 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 125.946 bits (315), Expect = 4.394e-32 Identity = 68/176 (38.64%), Postives = 99/176 (56.25%), Query Frame = 0 Query: 71 GMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDL--AGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFE---QVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDE 241 +HG S +L ++QL D PRI+ +AG YPGIT +E A S P P G+W Y+FSDPDGPQ+GTVA S +V C DPVV+IA + +L I L + + ++ +VLVDR F KF + ++++ F +P +LG+ +P+ KSG++E DE Sbjct: 39 SLHGDNSCYLPLKQLDQDYYGPRIVQIAGAYPGITREEFYATQSEPPPEPGQWNYDFSDPDGPQLGTVAIEGSNVVAVCEDPVVIIAEHTSLSIPLPESIKEPVDIVVLVDRDLNRFAERKFLVLDVGEDALIIAAFPFKTDLPPNCEILGQAVLCQVPWLPSMKPTKSGFLEADE 214
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|922866068|gb|KOO32998.1| (hypothetical protein Ctob_014310 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 109.383 bits (272), Expect = 6.174e-25 Identity = 62/179 (34.64%), Postives = 95/179 (53.07%), Query Frame = 0 Query: 70 DGMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGD------RFFQTNKFYAFAAPDGSVVMRWFEQVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDED 242 +G H TG RF+ + + D P ++ +AG +PG++ D+L+ P P P G W Y + G V P S L+ + D V V+ + ALGI+ + E + L+DRGD R F FYAF +G V +RW +VPAGW +LGR+ Y +P+ + G + G+ E D++ Sbjct: 119 EGSHSTGYRFMPLSTVSKDS-APALVCLAGFFPGLSTDDLLRPQPLPFPPPGTWNYHVLTGEACSSGVVCLPGSALLDSHPDTVGVVCASTALGIEFPDRSEHEVIALIDRGDVATLDRREFDNQAFYAFGDEEGRVQIRWIAEVPAGWRILGRLLYAQMPFVSRAGTNR-GFAENDDE 295
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|298712879|emb|CBJ33396.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 99.7525 bits (247), Expect = 1.165e-22 Identity = 50/115 (43.48%), Postives = 66/115 (57.39%), Query Frame = 0 Query: 59 RTRGLSSAQLQDGMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIE 173 RT LS A +G HG SRFL + Q+ + PRI+ VAG P IT ++MA TP+P G W Y+FSDP+GPQ+GTVA P V +PV ++ ND L I + + E Sbjct: 43 RTGSLSMAAPLEGSHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTE 157
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|298712881|emb|CBJ33398.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 91.6633 bits (226), Expect = 2.744e-19 Identity = 51/134 (38.06%), Postives = 72/134 (53.73%), Query Frame = 0 Query: 93 RIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFEQVPA-GWVLLGRVHYVTLPY 225 R+ VAG P IT +MA TP+P G W Y+FSDP+GPQ+GTVA P V +PV ++ ND L I + + E +R F+ KF+ + P +V+R+FE P G+ +GRV V P+ Sbjct: 6 RMEQVAGALPEITVAYIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKTEM-------NREFEFGKFFLWDTPSEGLVVRYFEGEPTPGFACVGRVGIVLAPF 132
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|546300154|ref|XP_005711030.1| (unnamed protein product [Chondrus crispus] >gi|507107217|emb|CDF40736.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 68.5514 bits (166), Expect = 4.312e-10 Identity = 55/178 (30.90%), Postives = 85/178 (47.75%), Query Frame = 0 Query: 71 GMHGTGSRFLSIQQLKGDELMPRIIPVAGVYPGITADELMA--PTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALG---IDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFEQVPA--GWVLLGRVHYVTLPYTEKTGRFKSGWMEVDE 241 G HG GSRFLS+ ++ +E PRI+ VAG P +T E M P P + P G Q +A ++ C+DPV V+ + L + ++ + DI +V + F KFYA+A G V + W +++P+ LG+V + L E+ + KS W E +E Sbjct: 103 GKHGEGSRFLSMSAVEAEEHFPRILTVAGRVPELTVKEFMETPPVLQNRPPNAGNMFVTMLPPGYQGQIIAMQGLEVIAKCMDPVAVLIPAEELSAAQLSISDDADIAVVVERNVSKLDFDKTKFYAWAV-GGRVKVGWVKEMPSPDNAKCLGQVVFGMLEEKEELRKKKSCWEEENE 279
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|972343293|ref|WP_058999353.1| (hypothetical protein [Leptolyngbya sp. NIES-2104] >gi|944517212|dbj|GAP97053.1| hypothetical protein NIES2104_36000 [Leptolyngbya sp. NIES-2104]) HSP 1 Score: 63.1586 bits (152), Expect = 4.986e-8 Identity = 47/165 (28.48%), Postives = 82/165 (49.70%), Query Frame = 0 Query: 80 LSIQQLKGDELMPRIIPVAGVYPGITADELMAPTSTPSPSYGRWAYEFSDPDGPQVGT---VAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFEQVPAGWVLLGRVHYVTLPYTEKTGRFKSGWMEVDE 241 L + +L+ D+ +PRI+PVAG P +D P + + + +FS GT + P ++ + DP+ ++ +D L L G + E +V+VDR R +Q + ++A A D + ++WFE+ P+ LLGRV V P + + ++DE Sbjct: 198 LPVYRLESDDQLPRILPVAGKLPLTVSDLNAVPITEETGVFA--IIQFS-------GTGAWMTIPGWQVIRSAEDPIAMLCDSDRLPNPLPGGTE-EVIVVVDRAQRDWQMDSYFAVANED-QLELQWFEEAPSI-ALLGRVILVMRPKKVLDEDYSTELWQIDE 350
BLAST of EWM28147.1 vs. NCBI_GenBank
Match: gi|554669806|ref|WP_023171953.1| (hypothetical protein [Gloeobacter kilaueensis] >gi|553881470|gb|AGY56912.1| hypothetical protein GKIL_0666 [Gloeobacter kilaueensis JS1]) HSP 1 Score: 60.077 bits (144), Expect = 5.943e-7 Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 0 Query: 80 LSIQQLKGDELMPRIIPVAGVYPGITADELM-APTSTPSPSYGRWAYEFSDPDGPQVGTVAFPASTLVHACVDPVVVIATNDALGIDLAGEHDIEAMVLVDRGDRFFQTNKFYAFAAPDGSVVMRWFE---QVPAGWVLLGRVHYVTLP 224 L + + + +EL PRI+PVAG P + A+ L AP + P +G A P G G A P ++ DPV V+ + LG D + E + +V++DR + + +++ F +G +V+ WFE QVP LLG++ V LP Sbjct: 202 LPVYRPEAEELQPRILPVAGALP-LAAEALKDAPQARPEGPFGVIA-----PAG-TGGWAAVPGWQVIEQATDPVAVLCRGNQLG-DASLERLPQVLVVIDRAVQQWDASRYVGFEQ-EGQLVIDWFESPPQVP----LLGQIILVLLP 337 The following BLAST results are available for this feature:
BLAST of EWM28147.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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