rna2404, rna2404 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2404
Unique Name	rna2404
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	731
Alignment location	CM002459.1:302060..304538 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100004g37.9140.mrna
Orig protein id	gnl\|cribi\|Naga_100004g37.9140
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:302060..304538 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g37	gene2298	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28209.1	cds2396	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2404	rna2404-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:302060..304538-
coding sequence from alignment at CM002459.1:302060..304538-

mRNA sequence

>rna2404 ID=rna2404|Name=rna2404|organism=Nannochloropsis gaditana|type=mRNA|length=731bp
CGCCCGACGACGAATTTCAACACGTATATCTTGCCAACTCCAGGTCAATT
GATCGTCACACCAAATAGTGTGCACAACCTCGATGCCAACCAAACACTAC
TCATTATCCTTTTTGAACCTGCTCGGGGTCCCGCTCTCTCCTCATTCCCC
TCTCCTGCTCTGCTTTCCTAAGCCCTCTAGCCCTGCTCCTCCATTATGAT
GTCTTCGTGGCTGGGTAGTCTCGTATTGCGTCGCGCCGCCACGGTGGCCA
CTATACGGGCGGGTTCACAACCTGACGCTGTGTATGGTGGAATTGCTTCA
ATCCCCTGCCTTTTGAAAGGCCCCTTTCTTCAACCATCGCGGTCCCTGGC
CAACCATCGGCATAAGAAAATCGTCAAAATGGCAAAAGGCTACCGAGGAC
GGACCAATTGCTTTCGTATTGCAGTGCAACGTGTCGAAAAAGCATTGCAG
TACGCATATCGAGACCGTAAAGTTAAAAAGAGGGAATTCCGCTCCCTCTG
GATTCAACGGATTGGTGCCGCTGTCCAACAGTACGGCATGAACTACTCCC
GCTTTATCCCTGGATTGCGGCGTGCAAACATCACACTCAATCGCAAGGTT
CTGGCAGACCTGGCGGTTTCGGAACCTTATTCATTCAAAGCGGTTGTTGA
GACTGTTCGAAGCCAGAGATGACGCGGAGATCGGGACCTGACCATGTACA
TGAAAAGAACAAAGACAACAGCAATAGCACT

protein sequence of rna2404

>rna2404-protein ID=rna2404-protein|Name=rna2404|organism=Nannochloropsis gaditana|type=polypeptide|length=689bp
MERQRRRRGNTGNSLGTAAVFSALLVASTAISNPSTRTQAQAAPHARDSS
SLCSSLPHFLHTTRGGTSSIGIRERWEGQDIMSTVSRALTREGPELSLAP
ILFIGTSDESSRDILSELFEFTHPLDSAGSHVFVSPFGDAMAGEGDMEGD
RQAIALVTTLVSSEEDAPTGAFARAAQDAAMAFTQGNDVVWSVAHADVLR
GDLGGTSLFQAILEQFLAFEENGLVDVREAPKTLHLIVTDVGKEEAEELG
LEKEMERLLTQIWRRLIVPVGSALKEEENEEEGVGLSAPAWTRLLNLNVI
FAPSKVYAGSERARALASLKGALDEKLVSSDPFLPASTLRQSIAALLPVS
QSFLSASTGPSLSRSIPKHDTLVSSFYLDKLVVRYTALFRQDARHLLEEL
NTGYDEDFGRTFTELIEKYLSDFHQEVYGQDAGPIHASLAGLNAGQVAAV
VRTRKENLHRALLGLTEEGYVRQLQFLKQMAQEEFRKGISALKYQWELIP
GFAKAIKAAKALFVDRAGKLACARSGPTWKSIADKELRSLSKVLETQADE
VIERTRASGGFVPSKLRRPIGVQVNWLGANFFHFLRDSSVDPLSIRTDSG
VALWERLGETWASRDGKDQRVSARYRAVYGEDIDGSVMDYLLTSPKGVGL
NDRDPRIRFGWNKKVAYDLVRNHDDMTFQVPHAKAIASY

mRNA from alignment at CM002459.1:302060..304538-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2404 ID=rna2404|Name=rna2404|organism=Nannochloropsis gaditana|type=mRNA|length=2479bp|location=Sequence derived from alignment at CM002459.1:302060..304538- (Nannochloropsis gaditana)
TGTATGTGGGTGTTTTCTGTCTTTGACATTTCTGGGAGTGATTGTTTCTT
TCAGTTTACATAAGAAGATATTGTACCGGCGATGGGGCCGGGCGGCTGTC
TTCAAGGGTTCTCAACCATCAAGAAGCCTCAACTCTCCCAACAGCAACTT
ACCGTACCATCCTGAATAACTATCTCGACACACAGAGCCCATGGAGCGAC
AAAGAAGGAGAAGGGGGAATACCGGTAATTCGCTGGGCACAGCTGCAGTT
TTTAGTGCTTTACTGGTAGCCTCAACAGCGATTTCCAACCCATCAACAAG
GACCCAAGCACAAGCCGCACCTCACGCACGCGATAGCTCCTCTCTCTGCT
CTTCCTTGCCCCATTTCCTACACACCACGCGGGGTGGGACATCCTCGATA
GGCATCCGGGAAAGATGGGAAGGCCAAGATATCATGTCCACCGTCTCCAG
GGCTCTCACGAGAGAAGGCCCTGAACTCAGCCTCGCCCCTATCCTTTTCA
TTGGCACAAGCGACGAATCCTCTCGCGATATTCTCTCGGAGCTTTTTGAA
TTCACACACCCTCTCGACTCTGCTGGTTCACACGTGTTTGTGTCCCCGTT
TGGTGACGCGATGGCAGGAGAGGGCGACATGGAAGGGGATCGACAAGCAA
TTGCCCTGGTCACCACCCTGGTTTCCAGTGAGGAGGACGCGCCCACTGGG
GCATTTGCAAGAGCAGCGCAAGACGCTGCCATGGCTTTTACACAGGGAAA
TGACGTGGTTTGGAGTGTGGCACATGCCGACGTCCTGCGAGGCGACCTGG
GCGGGACCAGCCTGTTCCAAGCCATCCTCGAGCAGTTTCTGGCCTTCGAG
GAAAATGGATTGGTGGACGTAAGAGAGGCGCCGAAAACGCTGCATTTGAT
AGTGACAGATGTTGGGAAAGAGGAAGCAGAAGAGCTGGGCTTGGAGAAGG
AAATGGAGAGGCTGTTGACTCAGATATGGCGGAGGTTGATCGTGCCTGTA
GGGAGCGCCTTGAAGGAGGAAGAGAACGAGGAGGAAGGAGTAGGTTTGTC
GGCTCCAGCCTGGACCCGTCTATTGAATTTAAACGTCATATTTGCACCCT
CCAAGGTGTACGCGGGGAGCGAGCGTGCCCGTGCTCTGGCCTCCCTCAAA
GGCGCTTTGGACGAGAAGCTGGTCAGCTCGGATCCTTTCCTCCCCGCCTC
CACCCTCCGCCAGTCGATAGCTGCTTTGCTACCGGTGTCTCAAAGCTTTC
TGAGCGCCTCCACGGGTCCCTCGCTGTCCCGCTCCATTCCCAAGCACGAC
ACGCTTGTCTCGTCTTTCTACCTGGACAAGCTGGTGGTCCGCTACACGGC
CCTCTTCCGTCAAGACGCGCGTCACTTATTGGAGGAATTGAACACGGGCT
ACGACGAAGATTTTGGCCGCACGTTTACCGAGTTGATTGAGAAATATCTG
TCAGACTTTCACCAGGAGGTGTACGGGCAGGACGCGGGCCCCATCCACGC
TTCTCTGGCGGGCCTGAATGCGGGCCAGGTGGCGGCGGTGGTGAGGACCA
GGAAAGAGAACTTGCATCGAGCCCTGCTAGGCCTGACGGAGGAAGGCTAC
GTCAGACAGCTGCAATTTTTGAAGCAAATGGCACAGGAGGAGTTTCGAAA
GGGCATTTCGGCTCTGAAGTATCAGTGGGAGTTGATCCCCGGTTTTGCCA
AGGCAATCAAAGCGGCGAAAGCCTTGTTTGTGGACCGAGCGGGCAAGTTA
GCCTGTGCTAGGAGCGGCCCCACGTGGAAATCCATCGCCGACAAGGAGCT
CAGGAGCCTGAGCAAGGTCTTAGAAACCCAGGCGGACGAGGTGATCGAGC
GGACGCGGGCGAGCGGGGGCTTCGTTCCTTCCAAGCTGCGGCGGCCCATC
GGCGTGCAAGTGAATTGGCTGGGGGCGAATTTCTTCCATTTCCTCCGGGA
CTCTTCGGTGGACCCTCTCAGCATCCGGACCGACTCCGGCGTGGCACTGT
GGGAGCGCCTGGGAGAAACGTGGGCAAGCCGGGATGGGAAGGATCAGCGC
GTCTCGGCCAGGTACCGGGCGGTGTACGGGGAAGATATCGACGGTTCGGT
GATGGACTATCTGCTCACGAGCCCCAAGGGCGTCGGGCTCAACGACCGCG
ACCCGCGGATCCGCTTCGGATGGAACAAAAAGGTGGCCTATGACTTGGTC
AGGAACCATGACGACATGACTTTTCAGGTTCCTCACGCGAAAGCCATTGC
CTCGTACTAGTTTGGGGCGCGAAGGGGAAACCATGCCAGGGGATATGGGA
GACGGTGGTGGGAGGATGGCCCTTAGCAAAGACTACCGACGGCATGTCAC
CCCAGACATAGGCAACACTGCCAAGCGGCAAAGCCACATGCACATCGTGT
GGAAGATGACAGCCCTTTATGACAAAGAAATGATCACACGCGGGCAGGTG
ACCTGGAGTGCTATTGCTGTTGTCTTTGT

Coding sequence (CDS) from alignment at CM002459.1:302060..304538-

>rna2404 ID=rna2404|Name=rna2404|organism=Nannochloropsis gaditana|type=CDS|length=2070bp|location=Sequence derived from alignment at CM002459.1:302060..304538- (Nannochloropsis gaditana)
ATGGAGCGACAAAGAAGGAGAAGGGGGAATACCGGTAATTCGCTGGGCAC
AGCTGCAGTTTTTAGTGCTTTACTGGTAGCCTCAACAGCGATTTCCAACC
CATCAACAAGGACCCAAGCACAAGCCGCACCTCACGCACGCGATAGCTCC
TCTCTCTGCTCTTCCTTGCCCCATTTCCTACACACCACGCGGGGTGGGAC
ATCCTCGATAGGCATCCGGGAAAGATGGGAAGGCCAAGATATCATGTCCA
CCGTCTCCAGGGCTCTCACGAGAGAAGGCCCTGAACTCAGCCTCGCCCCT
ATCCTTTTCATTGGCACAAGCGACGAATCCTCTCGCGATATTCTCTCGGA
GCTTTTTGAATTCACACACCCTCTCGACTCTGCTGGTTCACACGTGTTTG
TGTCCCCGTTTGGTGACGCGATGGCAGGAGAGGGCGACATGGAAGGGGAT
CGACAAGCAATTGCCCTGGTCACCACCCTGGTTTCCAGTGAGGAGGACGC
GCCCACTGGGGCATTTGCAAGAGCAGCGCAAGACGCTGCCATGGCTTTTA
CACAGGGAAATGACGTGGTTTGGAGTGTGGCACATGCCGACGTCCTGCGA
GGCGACCTGGGCGGGACCAGCCTGTTCCAAGCCATCCTCGAGCAGTTTCT
GGCCTTCGAGGAAAATGGATTGGTGGACGTAAGAGAGGCGCCGAAAACGC
TGCATTTGATAGTGACAGATGTTGGGAAAGAGGAAGCAGAAGAGCTGGGC
TTGGAGAAGGAAATGGAGAGGCTGTTGACTCAGATATGGCGGAGGTTGAT
CGTGCCTGTAGGGAGCGCCTTGAAGGAGGAAGAGAACGAGGAGGAAGGAG
TAGGTTTGTCGGCTCCAGCCTGGACCCGTCTATTGAATTTAAACGTCATA
TTTGCACCCTCCAAGGTGTACGCGGGGAGCGAGCGTGCCCGTGCTCTGGC
CTCCCTCAAAGGCGCTTTGGACGAGAAGCTGGTCAGCTCGGATCCTTTCC
TCCCCGCCTCCACCCTCCGCCAGTCGATAGCTGCTTTGCTACCGGTGTCT
CAAAGCTTTCTGAGCGCCTCCACGGGTCCCTCGCTGTCCCGCTCCATTCC
CAAGCACGACACGCTTGTCTCGTCTTTCTACCTGGACAAGCTGGTGGTCC
GCTACACGGCCCTCTTCCGTCAAGACGCGCGTCACTTATTGGAGGAATTG
AACACGGGCTACGACGAAGATTTTGGCCGCACGTTTACCGAGTTGATTGA
GAAATATCTGTCAGACTTTCACCAGGAGGTGTACGGGCAGGACGCGGGCC
CCATCCACGCTTCTCTGGCGGGCCTGAATGCGGGCCAGGTGGCGGCGGTG
GTGAGGACCAGGAAAGAGAACTTGCATCGAGCCCTGCTAGGCCTGACGGA
GGAAGGCTACGTCAGACAGCTGCAATTTTTGAAGCAAATGGCACAGGAGG
AGTTTCGAAAGGGCATTTCGGCTCTGAAGTATCAGTGGGAGTTGATCCCC
GGTTTTGCCAAGGCAATCAAAGCGGCGAAAGCCTTGTTTGTGGACCGAGC
GGGCAAGTTAGCCTGTGCTAGGAGCGGCCCCACGTGGAAATCCATCGCCG
ACAAGGAGCTCAGGAGCCTGAGCAAGGTCTTAGAAACCCAGGCGGACGAG
GTGATCGAGCGGACGCGGGCGAGCGGGGGCTTCGTTCCTTCCAAGCTGCG
GCGGCCCATCGGCGTGCAAGTGAATTGGCTGGGGGCGAATTTCTTCCATT
TCCTCCGGGACTCTTCGGTGGACCCTCTCAGCATCCGGACCGACTCCGGC
GTGGCACTGTGGGAGCGCCTGGGAGAAACGTGGGCAAGCCGGGATGGGAA
GGATCAGCGCGTCTCGGCCAGGTACCGGGCGGTGTACGGGGAAGATATCG
ACGGTTCGGTGATGGACTATCTGCTCACGAGCCCCAAGGGCGTCGGGCTC
AACGACCGCGACCCGCGGATCCGCTTCGGATGGAACAAAAAGGTGGCCTA
TGACTTGGTCAGGAACCATGACGACATGACTTTTCAGGTTCCTCACGCGA
AAGCCATTGCCTCGTACTAG

Synonyms

Publications