EWM28209.1, cds2396 (CDS) Nannochloropsis gaditana

Overview
NameEWM28209.1
Unique Namecds2396
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:302279..304348 -

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Properties
Property NameValue
Protein idEWM28209.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g37.9140.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:302279..304348 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28209.1 vs. NCBI_GenBank
Match: gi|585110554|gb|EWM28209.1| (hypothetical protein Naga_100004g37 [Nannochloropsis gaditana])

HSP 1 Score: 1400.96 bits (3625), Expect = 0.000e+0
Identity = 689/689 (100.00%), Postives = 689/689 (100.00%), Query Frame = 0
Query:    1 MERQRRRRGNTGNSLGTAAVFSALLVASTAISNPSTRTQAQAAPHARDSSSLCSSLPHFLHTTRGGTSSIGIRERWEGQDIMSTVSRALTREGPELSLAPILFIGTSDESSRDILSELFEFTHPLDSAGSHVFVSPFGDAMAGEGDMEGDRQAIALVTTLVSSEEDAPTGAFARAAQDAAMAFTQGNDVVWSVAHADVLRGDLGGTSLFQAILEQFLAFEENGLVDVREAPKTLHLIVTDVGKEEAEELGLEKEMERLLTQIWRRLIVPVGSALKEEENEEEGVGLSAPAWTRLLNLNVIFAPSKVYAGSERARALASLKGALDEKLVSSDPFLPASTLRQSIAALLPVSQSFLSASTGPSLSRSIPKHDTLVSSFYLDKLVVRYTALFRQDARHLLEELNTGYDEDFGRTFTELIEKYLSDFHQEVYGQDAGPIHASLAGLNAGQVAAVVRTRKENLHRALLGLTEEGYVRQLQFLKQMAQEEFRKGISALKYQWELIPGFAKAIKAAKALFVDRAGKLACARSGPTWKSIADKELRSLSKVLETQADEVIERTRASGGFVPSKLRRPIGVQVNWLGANFFHFLRDSSVDPLSIRTDSGVALWERLGETWASRDGKDQRVSARYRAVYGEDIDGSVMDYLLTSPKGVGLNDRDPRIRFGWNKKVAYDLVRNHDDMTFQVPHAKAIASY 689
            MERQRRRRGNTGNSLGTAAVFSALLVASTAISNPSTRTQAQAAPHARDSSSLCSSLPHFLHTTRGGTSSIGIRERWEGQDIMSTVSRALTREGPELSLAPILFIGTSDESSRDILSELFEFTHPLDSAGSHVFVSPFGDAMAGEGDMEGDRQAIALVTTLVSSEEDAPTGAFARAAQDAAMAFTQGNDVVWSVAHADVLRGDLGGTSLFQAILEQFLAFEENGLVDVREAPKTLHLIVTDVGKEEAEELGLEKEMERLLTQIWRRLIVPVGSALKEEENEEEGVGLSAPAWTRLLNLNVIFAPSKVYAGSERARALASLKGALDEKLVSSDPFLPASTLRQSIAALLPVSQSFLSASTGPSLSRSIPKHDTLVSSFYLDKLVVRYTALFRQDARHLLEELNTGYDEDFGRTFTELIEKYLSDFHQEVYGQDAGPIHASLAGLNAGQVAAVVRTRKENLHRALLGLTEEGYVRQLQFLKQMAQEEFRKGISALKYQWELIPGFAKAIKAAKALFVDRAGKLACARSGPTWKSIADKELRSLSKVLETQADEVIERTRASGGFVPSKLRRPIGVQVNWLGANFFHFLRDSSVDPLSIRTDSGVALWERLGETWASRDGKDQRVSARYRAVYGEDIDGSVMDYLLTSPKGVGLNDRDPRIRFGWNKKVAYDLVRNHDDMTFQVPHAKAIASY
Sbjct:    1 MERQRRRRGNTGNSLGTAAVFSALLVASTAISNPSTRTQAQAAPHARDSSSLCSSLPHFLHTTRGGTSSIGIRERWEGQDIMSTVSRALTREGPELSLAPILFIGTSDESSRDILSELFEFTHPLDSAGSHVFVSPFGDAMAGEGDMEGDRQAIALVTTLVSSEEDAPTGAFARAAQDAAMAFTQGNDVVWSVAHADVLRGDLGGTSLFQAILEQFLAFEENGLVDVREAPKTLHLIVTDVGKEEAEELGLEKEMERLLTQIWRRLIVPVGSALKEEENEEEGVGLSAPAWTRLLNLNVIFAPSKVYAGSERARALASLKGALDEKLVSSDPFLPASTLRQSIAALLPVSQSFLSASTGPSLSRSIPKHDTLVSSFYLDKLVVRYTALFRQDARHLLEELNTGYDEDFGRTFTELIEKYLSDFHQEVYGQDAGPIHASLAGLNAGQVAAVVRTRKENLHRALLGLTEEGYVRQLQFLKQMAQEEFRKGISALKYQWELIPGFAKAIKAAKALFVDRAGKLACARSGPTWKSIADKELRSLSKVLETQADEVIERTRASGGFVPSKLRRPIGVQVNWLGANFFHFLRDSSVDPLSIRTDSGVALWERLGETWASRDGKDQRVSARYRAVYGEDIDGSVMDYLLTSPKGVGLNDRDPRIRFGWNKKVAYDLVRNHDDMTFQVPHAKAIASY 689          
BLAST of EWM28209.1 vs. NCBI_GenBank
Match: gi|298709176|emb|CBJ31119.1| (RHD3b, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic [Ectocarpus siliculosus])

HSP 1 Score: 72.4034 bits (176), Expect = 1.567e-9
Identity = 101/420 (24.05%), Postives = 169/420 (40.24%), Query Frame = 0
Query:  176 AQDAAMAFTQGNDVVWSVAHADVLRGDLGGTSLFQAILEQFLAFEENGLVDVREAPKTLHLIVTDVGKEEAEELGLEKEMERLLTQIWRRLIVPVGSALKEEENEEEGVGLSAPAWTRLLNLNVIFAPSKVYAGSERARALASLKGALDEKLVSSDPFLPASTLRQSIAALLPVSQSFLSASTGPSLSRSIPKHDTLVSSFYLDKLVVRYTALFRQDARHL---LEELNTGYDEDFGRTFTELIEKYLSDFHQEVYGQDAGPIHASLAGLNAGQVAAVVRTRKENLHRALLGLTEEGYVRQLQFLKQMAQEEFRKGISALKYQWELIPGFAKAIKAAKALFVDRAGKLACARSGPTWKSIADKELRSLSKVLETQADEVIERTRASGGFVPSKLRRPIGVQVNW-LGANFFHFLRDSSVD 591
            A  A ++    +  +++V   D+ R D    S  Q  LE+ L   E+G+VD  E PKT  + V D   E+ +E  LEK +   L  IW        +A+K E       G +  A + +L++ V   P   +A  E       LK ++ +    +     A  L+Q  +   P ++S  S              + L +SF      V+  A F+     +    EELNT    DFG     +I+  L ++ + V G                  + V+  +K  L R  L      +  Q+  L+  A+ +F + +S L+   ++      AI+ A   F      +  +R G    +   KELR   +     A E ++  +A GG V  + R+P+G+  +W L   F    R+S +D
Sbjct:  110 AGQAMVSLAVSDATIYNVLVHDLRRPD--ALSDVQPALEELLTLYEDGVVD-PEQPKTFVVAVRDC--EDGDEAELEKRVGERLQAIW-------AAAVKPE-------GFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMDGAAGTPAVEVARLLQQVSSYAGPATESVGS--------------NALTASFISSSAAVKCMASFKSLVGRMGAGFEELNT----DFGELCDGVIDTVLQEYDEAVDGVSGA--------------SGVLSRKKAELKRHCLRELGLRHADQVDLLRTAARAKFDETLSGLRVSPDVGKQMMDAIQEADKFFAKTVRGMN-SRHGSWPSNSVRKELRDEMREF---ASERLQLVQAQGGMVRMQKRKPVGMAFHWFLPKPFGQQARESRLD 474          
The following BLAST results are available for this feature:
BLAST of EWM28209.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110554|gb|EWM28209.1|0.000e+0100.00hypothetical protein Naga_100004g37 [Nannochlorops... [more]
gi|298709176|emb|CBJ31119.1|1.567e-924.05RHD3b, RHD3/Sey1 family GTPase involved in the ER-... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2404rna2404Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications