EWM28209.1, cds2396 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28209.1 vs. NCBI_GenBank
Match: gi|585110554|gb|EWM28209.1| (hypothetical protein Naga_100004g37 [Nannochloropsis gaditana]) HSP 1 Score: 1400.96 bits (3625), Expect = 0.000e+0 Identity = 689/689 (100.00%), Postives = 689/689 (100.00%), Query Frame = 0 Query: 1 MERQRRRRGNTGNSLGTAAVFSALLVASTAISNPSTRTQAQAAPHARDSSSLCSSLPHFLHTTRGGTSSIGIRERWEGQDIMSTVSRALTREGPELSLAPILFIGTSDESSRDILSELFEFTHPLDSAGSHVFVSPFGDAMAGEGDMEGDRQAIALVTTLVSSEEDAPTGAFARAAQDAAMAFTQGNDVVWSVAHADVLRGDLGGTSLFQAILEQFLAFEENGLVDVREAPKTLHLIVTDVGKEEAEELGLEKEMERLLTQIWRRLIVPVGSALKEEENEEEGVGLSAPAWTRLLNLNVIFAPSKVYAGSERARALASLKGALDEKLVSSDPFLPASTLRQSIAALLPVSQSFLSASTGPSLSRSIPKHDTLVSSFYLDKLVVRYTALFRQDARHLLEELNTGYDEDFGRTFTELIEKYLSDFHQEVYGQDAGPIHASLAGLNAGQVAAVVRTRKENLHRALLGLTEEGYVRQLQFLKQMAQEEFRKGISALKYQWELIPGFAKAIKAAKALFVDRAGKLACARSGPTWKSIADKELRSLSKVLETQADEVIERTRASGGFVPSKLRRPIGVQVNWLGANFFHFLRDSSVDPLSIRTDSGVALWERLGETWASRDGKDQRVSARYRAVYGEDIDGSVMDYLLTSPKGVGLNDRDPRIRFGWNKKVAYDLVRNHDDMTFQVPHAKAIASY 689 MERQRRRRGNTGNSLGTAAVFSALLVASTAISNPSTRTQAQAAPHARDSSSLCSSLPHFLHTTRGGTSSIGIRERWEGQDIMSTVSRALTREGPELSLAPILFIGTSDESSRDILSELFEFTHPLDSAGSHVFVSPFGDAMAGEGDMEGDRQAIALVTTLVSSEEDAPTGAFARAAQDAAMAFTQGNDVVWSVAHADVLRGDLGGTSLFQAILEQFLAFEENGLVDVREAPKTLHLIVTDVGKEEAEELGLEKEMERLLTQIWRRLIVPVGSALKEEENEEEGVGLSAPAWTRLLNLNVIFAPSKVYAGSERARALASLKGALDEKLVSSDPFLPASTLRQSIAALLPVSQSFLSASTGPSLSRSIPKHDTLVSSFYLDKLVVRYTALFRQDARHLLEELNTGYDEDFGRTFTELIEKYLSDFHQEVYGQDAGPIHASLAGLNAGQVAAVVRTRKENLHRALLGLTEEGYVRQLQFLKQMAQEEFRKGISALKYQWELIPGFAKAIKAAKALFVDRAGKLACARSGPTWKSIADKELRSLSKVLETQADEVIERTRASGGFVPSKLRRPIGVQVNWLGANFFHFLRDSSVDPLSIRTDSGVALWERLGETWASRDGKDQRVSARYRAVYGEDIDGSVMDYLLTSPKGVGLNDRDPRIRFGWNKKVAYDLVRNHDDMTFQVPHAKAIASY Sbjct: 1 MERQRRRRGNTGNSLGTAAVFSALLVASTAISNPSTRTQAQAAPHARDSSSLCSSLPHFLHTTRGGTSSIGIRERWEGQDIMSTVSRALTREGPELSLAPILFIGTSDESSRDILSELFEFTHPLDSAGSHVFVSPFGDAMAGEGDMEGDRQAIALVTTLVSSEEDAPTGAFARAAQDAAMAFTQGNDVVWSVAHADVLRGDLGGTSLFQAILEQFLAFEENGLVDVREAPKTLHLIVTDVGKEEAEELGLEKEMERLLTQIWRRLIVPVGSALKEEENEEEGVGLSAPAWTRLLNLNVIFAPSKVYAGSERARALASLKGALDEKLVSSDPFLPASTLRQSIAALLPVSQSFLSASTGPSLSRSIPKHDTLVSSFYLDKLVVRYTALFRQDARHLLEELNTGYDEDFGRTFTELIEKYLSDFHQEVYGQDAGPIHASLAGLNAGQVAAVVRTRKENLHRALLGLTEEGYVRQLQFLKQMAQEEFRKGISALKYQWELIPGFAKAIKAAKALFVDRAGKLACARSGPTWKSIADKELRSLSKVLETQADEVIERTRASGGFVPSKLRRPIGVQVNWLGANFFHFLRDSSVDPLSIRTDSGVALWERLGETWASRDGKDQRVSARYRAVYGEDIDGSVMDYLLTSPKGVGLNDRDPRIRFGWNKKVAYDLVRNHDDMTFQVPHAKAIASY 689
BLAST of EWM28209.1 vs. NCBI_GenBank
Match: gi|298709176|emb|CBJ31119.1| (RHD3b, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic [Ectocarpus siliculosus]) HSP 1 Score: 72.4034 bits (176), Expect = 1.567e-9 Identity = 101/420 (24.05%), Postives = 169/420 (40.24%), Query Frame = 0 Query: 176 AQDAAMAFTQGNDVVWSVAHADVLRGDLGGTSLFQAILEQFLAFEENGLVDVREAPKTLHLIVTDVGKEEAEELGLEKEMERLLTQIWRRLIVPVGSALKEEENEEEGVGLSAPAWTRLLNLNVIFAPSKVYAGSERARALASLKGALDEKLVSSDPFLPASTLRQSIAALLPVSQSFLSASTGPSLSRSIPKHDTLVSSFYLDKLVVRYTALFRQDARHL---LEELNTGYDEDFGRTFTELIEKYLSDFHQEVYGQDAGPIHASLAGLNAGQVAAVVRTRKENLHRALLGLTEEGYVRQLQFLKQMAQEEFRKGISALKYQWELIPGFAKAIKAAKALFVDRAGKLACARSGPTWKSIADKELRSLSKVLETQADEVIERTRASGGFVPSKLRRPIGVQVNW-LGANFFHFLRDSSVD 591 A A ++ + +++V D+ R D S Q LE+ L E+G+VD E PKT + V D E+ +E LEK + L IW +A+K E G + A + +L++ V P +A E LK ++ + + A L+Q + P ++S S + L +SF V+ A F+ + EELNT DFG +I+ L ++ + V G + V+ +K L R L + Q+ L+ A+ +F + +S L+ ++ AI+ A F + +R G + KELR + A E ++ +A GG V + R+P+G+ +W L F R+S +D Sbjct: 110 AGQAMVSLAVSDATIYNVLVHDLRRPD--ALSDVQPALEELLTLYEDGVVD-PEQPKTFVVAVRDC--EDGDEAELEKRVGERLQAIW-------AAAVKPE-------GFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMDGAAGTPAVEVARLLQQVSSYAGPATESVGS--------------NALTASFISSSAAVKCMASFKSLVGRMGAGFEELNT----DFGELCDGVIDTVLQEYDEAVDGVSGA--------------SGVLSRKKAELKRHCLRELGLRHADQVDLLRTAARAKFDETLSGLRVSPDVGKQMMDAIQEADKFFAKTVRGMN-SRHGSWPSNSVRKELRDEMREF---ASERLQLVQAQGGMVRMQKRKPVGMAFHWFLPKPFGQQARESRLD 474 The following BLAST results are available for this feature:
BLAST of EWM28209.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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