rna2394, rna2394 (mRNA) Nannochloropsis gaditana

Overview
Namerna2394
Unique Namerna2394
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1828
Alignment locationCM002459.1:277592..278690 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g25.9206.mrna
Orig protein idgnl|cribi|Naga_100004g25.9206
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:277592..278690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g25gene2288Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2394rna2394-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28275.1cds2386Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2394 ID=rna2394|Name=rna2394|organism=Nannochloropsis gaditana|type=mRNA|length=1828bp
TCATAGCTCATTTTTTAATGGTTTGCAGATTGAGACAGGGTCTGGTGGCA
ACGTATTCGTCAAGCAGGCAGACGTAGGACGCCCGTAGGCGAAAAGCCGC
CTTTTCTACTACATCGCATCTACCATGACTATCGGCAACCCATTCTTCAA
GTGGGTCAGTCAATACCTGCGGCCCTTTCTACGTGACCGATTAAAACCCC
TCATTGACACGTATGCTCCCAACAAGATTGCCACATTGGAGGGTCCATCG
CCCGTGTCAGTCGCGTCGGGAGTCCCTGCAACTCGTACTCTTCAACCCCT
GTTTAACGATCTTAGGGCAAATGTCGCAACAAAAAGTAAGGTTAAAAGCA
CTGTACATAGAATGAGAGCGGGCGAAAGCAGCGCTTGCGGTAGTATGTCG
GCCAATTCCCTCCTTATCGAGCAGCAACAAGCTGCACTCCTGACTTCTGC
CCTCGTGGCAGCACAGCGCAAGAAGGCGACGAGTACTTGCACGTCACAGC
CTGGTCTCTCAGAAAAGACGCTCCCTTCATGTCTTCAACATCACCAGCAG
CAACAGCTGCAGCTGCAGCAAAATCAGCGGGAGCACCCCCACTTGCCTGA
AAAGGAAGTGGAAAAAGCGGCCTTGGCATCGACGACAGAGGAAGCGTCCG
CGCCGCCCTCCTCTACAGGCGAACCACGCGTCACCTTGTCTTCACAGCAA
CAATTGGAAGACGTACAGCGTGGAGAGCAGCGCAAGTTGAACCCTGTAGA
CCGGGGAGGGGCACGGACCAAGGTTGAAGTTAATGCGCCGAGTAGCAGTG
GAGCCGCATCCTCCCCCCGTTTCAAGCGTTGCTACTACGTCCCTGTGATC
AATCCCTTGCCCGACCTGAAGGAAAAGCAACTCGCCGTCCTTGACATGCG
CCTGTACGGGGTCCGGGACATGCCAACCTTCCGCGAGCTCGCCCCCTCCC
TTCCGCCATCCGTGCTGTCCACAGCCAAGCTCCGAGGTCTCACTCTGACT
CAGGCTCCCGAGATGGTCGCTGGCATGGCAGAACAAGAGACGTCGGCTTT
CCTCTCGGTGGCCGATGTCTTCCCCATGCAAGAGAGAGAGGAAACGGGAG
TGGGCGAGGCGGAGAAGGAGGAAGAGGGAGGCGAGGAAGGTGAGAGGGCG
CAGAAAGAGGATCGGTGGGACGGGAAAAGTCCTTGTTGATATCACATTGA
TGGTACGCGAAGAAAATGCACAAATCCGGAAGGAAAGCGGGCCTGGAAAA
GGGCAGAGGAAACATGAAATGCACAAATGAAGAGAACTAGGGTCAGAAAG
GACGCATTAGAAGAAAGGAGGAGGAAGAGACCGCGAAAGAAGAGTTCTTT
CCTGTGGATGTGGTAGCAAGGTTGCGGTTGGGAGCGAATGTTTCGCAGTT
AGATGACGTCTCCGAGGGCGCACCACCGCTCCGTCTGGGAAAGGGTGGGA
CATGTACAGTACAGTAGGGAAACGGCCTAGTGAGAGCCCACACCAGTATC
ATGCCACAGGTGGCGACTATTTACGAATCGTTATCGGATCTCTAAAGACA
GCGTCGGGCAGCCGGCGGAAAAGGATTGCCTCGATTGTCCGCGGATGGAC
GACTGCGGACATGGAATGATGCCTCGCGTACCCCGCGCGGGTCGAGGCCT
GAAATTGACCCCACAAGTGCCATCCCACGGGCTTTGAAAGCCCAGAAAAC
AAATTTCTGGTCTACCCCTACCTTCACATTGCATGGCAGAGGAGGCTAAA
ACTTGGCGGCAAGAAAAACAGAGGTGCAGGGGGGGCAAAAGCATTGTTTA
AGGACGAAGGTCGTTATTCCTGGCCGCC
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protein sequence of rna2394

>rna2394-protein ID=rna2394-protein|Name=rna2394|organism=Nannochloropsis gaditana|type=polypeptide|length=317bp
MTVKAFGFLIRPHFLKTLYRQTQLRRRVNCSVLSSWASVMQRAPLLPLLL
LSLARLTGGSNLVTYKLQHAFGITGAFQDRGSVEVLVDSGALTLIPPPEE
QRVLVPEASLDEIAREMKGFNGGMYRLRAQESDGVSSPVVMTSVHLCDVV
RAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVA
EEVGRRTPGDKEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPPLIAI
RQEDQGGQPEAPKSFLQKYWIFIVLFFLLLNTGAAPPDEGGTGGAQTGQG
GPATRRGGGGGRGGKEE
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mRNA from alignment at CM002459.1:277592..278690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2394 ID=rna2394|Name=rna2394|organism=Nannochloropsis gaditana|type=mRNA|length=1099bp|location=Sequence derived from alignment at CM002459.1:277592..278690- (Nannochloropsis gaditana)
ATGACCGTGAAGGCGTTTGGTTTTCTAATACGACCGCATTTCCTAAAAAC
CCTTTACAGACAGACTCAGCTGCGACGTCGGGTGAATTGCTCCGTCTTAT
CGTCTTGGGCCTCAGTAATGCAGCGAGCTCCTCTCCTCCCTCTCCTATTG
CTTTCCCTCGCACGGCTCACGGGTGGCAGCAATTTGGTGACTTATAAATT
GCAACATGCATTTGGAATTACTGGAGCATTTCAAGATCGCGGAAGTGTAG
AGGTGTTGGTAGATAGTGGGGCGCTTACCCTCATTCCTCCGCCGGAGGAG
CAGCGCGTTCTGGTGCCGGAAGCCAGTCTTGACGAGATCGCTCGGGAAAT
GAAAGGGTTCAACGGTGGCATGTACCGCCTTCGTGCCCAAGAAAGCGATG
GTGTATCCTCACCTGTCGTCATGACCAGCGTACACCTTTGCGACGTGGTG
CGGGCGGGTTTCCGTGAGAACATCACTTTGACCCTGGACGTCGAAGGGCG
CCTGATTGGATTAGAGTACACCCCGCGCATGAGTCGCCTCTCGCCGAGTA
CCTGCAAGAACATAAAACATCCCCTCGACCAATATCATGCCCGGGTGGCT
GAGGAGGTTGGAAGGAGGACCCCGGGGGATAAGGAAGATTCGGTGTCATC
GCCACCGGCCTTCATGACATGGGTGAAGGCATCAGTGGATGATTCAGGCA
AGAGCGTGCCCGTGCTGGTGCCGGGTCAACGACCGCCCTTGATAGCGATC
CGACAGGAGGATCAAGGAGGACAACCGGAGGCACCCAAGAGTTTTTTACA
AAAATATGTGGGTAATGGAGGGCGAGCTGTACGGGAAAGGGGAGGGGGGG
GAGAGACGCTCACATGCCGACTTTCTTATGCAGGGGGGCACAGAGAGGGT
GTCGATGTACTGTCCTTCACCTCTCCTCATTTTTGAAACCCTCCACACAC
AGTGGATCTTCATCGTGCTGTTTTTCCTCCTGCTCAACACGGGGGCTGCC
CCCCCGGACGAGGGAGGGACCGGCGGGGCCCAGACGGGCCAAGGAGGACC
GGCCACGAGACGGGGAGGGGGAGGGGGGAGGGGAGGGAAAGAGGAATAA
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Coding sequence (CDS) from alignment at CM002459.1:277592..278690-

>rna2394 ID=rna2394|Name=rna2394|organism=Nannochloropsis gaditana|type=CDS|length=1908bp|location=Sequence derived from alignment at CM002459.1:277592..278690- (Nannochloropsis gaditana)
TGGATCTTCATCGTGCTGTTTTTCCTCCTGCTCAACACGGGGGCTGCCCC
CCCGGACGAGGGAGGGACCGGCGGGGCCCAGACGGGCCAAGGAGGACCGG
CCACGAGACGGGGAGGGGGAGGGGGGAGGGGAGGGAAAGAGGAATAAATG
ACCGTGAAGGCGTTTGGTTTTCTAATACGACCGCATTTCCTAAAAACCCT
TTACAGACAGACTCAGCTGCGACGTCGGGTGAATTGCTCCGTCTTATCGT
CTTGGGCCTCAGTAATGCAGCGAGCTCCTCTCCTCCCTCTCCTATTGCTT
TCCCTCGCACGGCTCACGGGTGGCAGCAATTTGGTGACTTATAAATTGCA
ACATGCATTTGGAATTACTGGAGCATTTCAAGATCGCGGAAGTGTAGAGG
TGTTGGTAGATAGTGGGGCGCTTACCCTCATTCCTCCGCCGGAGGAGCAG
CGCGTTCTGGTGCCGGAAGCCAGTCTTGACGAGATCGCTCGGGAAATGAA
AGGGTTCAACGGTGGCATGTACCGCCTTCGTGCCCAAGAAAGCGATGGTG
TATCCTCACCTGTCGTCATGACCAGCGTACACCTTTGCGACGTGGTGCGG
GCGGGTTTCCGTGAGAACATCACTTTGACCCTGGACGTCGAAGGGCGCCT
GATTGGATTAGAGTACACCCCGCGCATGAGTCGCCTCTCGCCGAGTACCT
GCAAGAACATAAAACATCCCCTCGACCAATATCATGCCCGGGTGGCTGAG
GAGGTTGGAAGGAGGACCCCGGGGGATAAGGAAGATTCGGTGTCATCGCC
ACCGGCCTTCATGACATGGGTGAAGGCATCAGTGGATGATTCAGGCAAGA
GCGTGCCCGTGCTGGTGCCGGGTCAACGACCGCCCTTGATAGCGATCCGA
CAGGAGGATCAAGGAGGACAACCGGAGGCACCCAAGAGTTTTTTACAAAA
ATATTGGATCTTCATCGTGCTGTTTTTCCTCCTGCTCAACACGGGGGCTG
CCCCCCCGGACGAGGGAGGGACCGGCGGGGCCCAGACGGGCCAAGGAGGA
CCGGCCACGAGACGGGGAGGGGGAGGGGGGAGGGGAGGGAAAGAGGAATA
AATGACCGTGAAGGCGTTTGGTTTTCTAATACGACCGCATTTCCTAAAAA
CCCTTTACAGACAGACTCAGCTGCGACGTCGGGTGAATTGCTCCGTCTTA
TCGTCTTGGGCCTCAGTAATGCAGCGAGCTCCTCTCCTCCCTCTCCTATT
GCTTTCCCTCGCACGGCTCACGGGTGGCAGCAATTTGGTGACTTATAAAT
TGCAACATGCATTTGGAATTACTGGAGCATTTCAAGATCGCGGAAGTGTA
GAGGTGTTGGTAGATAGTGGGGCGCTTACCCTCATTCCTCCGCCGGAGGA
GCAGCGCGTTCTGGTGCCGGAAGCCAGTCTTGACGAGATCGCTCGGGAAA
TGAAAGGGTTCAACGGTGGCATGTACCGCCTTCGTGCCCAAGAAAGCGAT
GGTGTATCCTCACCTGTCGTCATGACCAGCGTACACCTTTGCGACGTGGT
GCGGGCGGGTTTCCGTGAGAACATCACTTTGACCCTGGACGTCGAAGGGC
GCCTGATTGGATTAGAGTACACCCCGCGCATGAGTCGCCTCTCGCCGAGT
ACCTGCAAGAACATAAAACATCCCCTCGACCAATATCATGCCCGGGTGGC
TGAGGAGGTTGGAAGGAGGACCCCGGGGGATAAGGAAGATTCGGTGTCAT
CGCCACCGGCCTTCATGACATGGGTGAAGGCATCAGTGGATGATTCAGGC
AAGAGCGTGCCCGTGCTGGTGCCGGGTCAACGACCGCCCTTGATAGCGAT
CCGACAGGAGGATCAAGGAGGACAACCGGAGGCACCCAAGAGTTTTTTAC
AAAAATAT
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Synonyms
Publications