EWM28275.1, cds2386 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28275.1 vs. NCBI_GenBank
Match: gi|585110620|gb|EWM28275.1| (hypothetical protein Naga_100004g25 [Nannochloropsis gaditana]) HSP 1 Score: 644.425 bits (1661), Expect = 0.000e+0 Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0
Query: 1 MTVKAFGFLIRPHFLKTLYRQTQLRRRVNCSVLSSWASVMQRAPLLPLLLLSLARLTGGSNLVTYKLQHAFGITGAFQDRGSVEVLVDSGALTLIPPPEEQRVLVPEASLDEIAREMKGFNGGMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPPLIAIRQEDQGGQPEAPKSFLQKYWIFIVLFFLLLNTGAAPPDEGGTGGAQTGQGGPATRRGGGGGRGGKEE 317
MTVKAFGFLIRPHFLKTLYRQTQLRRRVNCSVLSSWASVMQRAPLLPLLLLSLARLTGGSNLVTYKLQHAFGITGAFQDRGSVEVLVDSGALTLIPPPEEQRVLVPEASLDEIAREMKGFNGGMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPPLIAIRQEDQGGQPEAPKSFLQKYWIFIVLFFLLLNTGAAPPDEGGTGGAQTGQGGPATRRGGGGGRGGKEE
Sbjct: 1 MTVKAFGFLIRPHFLKTLYRQTQLRRRVNCSVLSSWASVMQRAPLLPLLLLSLARLTGGSNLVTYKLQHAFGITGAFQDRGSVEVLVDSGALTLIPPPEEQRVLVPEASLDEIAREMKGFNGGMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPPLIAIRQEDQGGQPEAPKSFLQKYWIFIVLFFLLLNTGAAPPDEGGTGGAQTGQGGPATRRGGGGGRGGKEE 317
BLAST of EWM28275.1 vs. NCBI_GenBank
Match: gi|1210523356|dbj|GAX17993.1| (hypothetical protein FisN_18Hh206 [Fistulifera solaris]) HSP 1 Score: 75.485 bits (184), Expect = 5.229e-12 Identity = 56/220 (25.45%), Postives = 106/220 (48.18%), Query Frame = 0
Query: 105 VPEASLDEIAREMKGFNGGMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIK---HPLD-QYHARVAEEVGRRTPGDKEDSV---SSPPAFMTWVKASVDDSGKSVPVLVPGQRPPLIAIRQEDQGGQPEAPKSFLQKYW-IFIVLFFLLLNTGAAPPDEGGTGGAQTGQGGPATRRGGGGGRGGKE 316
+P + +I +E Y+L+ +D S+P ++++V C + RA FR+ +TL + + I + Y P +S L+P++C + + H D +H+R++ E PG ++ PP +T++K + +++ PGQ ++D P F+++YW I + LF + + PP++GG GA +G P G RG ++
Sbjct: 94 IPPDFMQQILKE-----NAFYQLKLVPNDSRSAPSILSTVPACQLRRANFRDEFVVTLGSDAQAISMTYIPLVSPLAPASCSHYEAADHDKDFVFHSRLSAET--TVPGMTLKTILPDYQPPPGLTFLKGAHLHVKEAMGDQKPGQ--------EQDNS----FPYGFMRRYWYILLPLFLMNFMSAGPPPEQGGAEGA--SEGTPTAGAGAPKRRGKRD 292
BLAST of EWM28275.1 vs. NCBI_GenBank
Match: gi|1210523596|dbj|GAX17556.1| (hypothetical protein FisN_18Lh206 [Fistulifera solaris]) HSP 1 Score: 68.5514 bits (166), Expect = 1.183e-9 Identity = 54/209 (25.84%), Postives = 95/209 (45.45%), Query Frame = 0
Query: 124 MYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPP--LIAIR------QEDQGGQPEA-------PKSFLQKYWIFIVLFFLLLNTGAAP-PDEGGTGGAQTGQGGPATRRGGGGGRGGKE 316
Y+L+ +D S+P ++++V C + RA FR+ LTL + + I + Y P +S L+P++C H ++ DKE + F + + A G ++ ++P +PP L ++ QE G Q + P F+++YW ++ FL+ A P P++GG GA +G P G RG ++
Sbjct: 109 FYQLKLVPNDSGSTPSILSTVPACQLRRANFRDEFVLTLGSDAQAISMTYIPLVSPLAPASCS---------HYEASDH-------DKEFT------FHSRLSAETTVPGMTLKTILPEYQPPPGLSFLKGAHLHVQEAMGTQKQGQEQDNSFPYGFMRRYWYILLPLFLMNFMSAGPSPEQGGAEGA--SEGTPTAGAGAPKRRGKRD 293
BLAST of EWM28275.1 vs. NCBI_GenBank
Match: gi|298715649|emb|CBJ28175.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 64.6994 bits (156), Expect = 1.681e-8 Identity = 67/253 (26.48%), Postives = 110/253 (43.48%), Query Frame = 0
Query: 64 TYKLQHAFGITGAFQDRGSVEVLVDSGALTLIPPPEEQRVLVPEASLDEIAREMKGFNGGMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPP--LIAIRQE--DQGGQPEAPKSFLQKYWIFIVLFFLLLNTGAAPPDEGGTGGAQTGQGGPATRRGGGGGR 312
+ ++HAFG + RG +E+ +D + L + ++E+ N G+Y +R +D S+ V+ +V C + A FRE ITL ++ +G ++G++Y + L+ ST K P+ +Y V + V R S +SVP+ V PP L A++++ + + +S L KYW +I L +LL +AP QGG AT GGGR
Sbjct: 22 SLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLRDASQMEELIA-----NDGLYLIRV-ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSLVGPLA-STRNCTKMPVAEYSEVVTKVVVVRAA-----------------------SAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVKYW-YIFLPCVLLFMFSAP-----------DQGGAATPPAAGGGR 232
BLAST of EWM28275.1 vs. NCBI_GenBank
Match: gi|813164758|ref|XP_012203439.1| (hypothetical protein SPRG_08820 [Saprolegnia parasitica CBS 223.65] >gi|641531824|gb|KDO25878.1| hypothetical protein SPRG_08820 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 64.6994 bits (156), Expect = 2.164e-8 Identity = 68/250 (27.20%), Postives = 102/250 (40.80%), Query Frame = 0
Query: 64 TYKLQHAF---GITGAFQDRGSVEVLVDSGALTLIPPPEEQRVLVPEASLDEIAREMKGFNGGMYRLRAQESDGV-SSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGD---KEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPPLIAIRQEDQGGQPEAPKSFLQKYWIFIV-LFFLLLNTGAAPPDEGGTGGAQTGQGGPATR 305
T L+H+ G G F RG V + T I P ++ + E L + + G Y +RA+ G SP V+ SV C +V+A FRE++ ++ G LI +E+ R + TC ++ R +E + G D P +T K + PP +A + + +PE +SF +KYW IV L +LL G AP +G Q G PA R
Sbjct: 51 TLDLEHSIAKDGAIGTFSPRGDVNIDFAPTKPTAIFP---SKLTLNEQQLSAFQKLVA--QDGFYTIRARSEPGNPKSPFVVASVPACFLVKARFREDLAFHVNEVGHLISIEF--RTPFVDTKTCSDVAK-------RNLKEATFYSTGAIFGATDGPEVPRIVITATKVAA---------------PPGVAPVRSENDPEPEEQQSFFRKYWYIIVPLLIVLLQGGDAPAAQG-----QGGSAAPARR 266
BLAST of EWM28275.1 vs. NCBI_GenBank
Match: gi|397580198|gb|EJK51487.1| (hypothetical protein THAOC_29330 [Thalassiosira oceanica]) HSP 1 Score: 61.6178 bits (148), Expect = 3.556e-7 Identity = 68/214 (31.78%), Postives = 96/214 (44.86%), Query Frame = 0
Query: 98 PEEQRVLVPEASLDEIAR-EMKGFNG-----GMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPP--LIAIRQEDQ---------------GGQP----EAP----KSFLQKYWIFIVLFFLLL 280
P E+ VL + DE A ++ F+ +Y + A+ES G+ S V TSV C V R+ RE I L + G L+ + Y P +S L+P TC +K PL Q + GR +ED V+S F T V + ++P ++P QRPP L R+ GG P E P SF +YW +IVL L+
Sbjct: 51 PNEEGVLQATFTPDEGATLDVNNFDSMVESKDLYTIIARES-GMKS-AVSTSVPGCSVRRSNLREEINLYIGPTGNLLSVAYRPNISPLAPKTCATLK-PLAQKPDAI---FGR----GEEDGVASRMPFKTTVSYESNKPMMAIPTVLPHQRPPPGLKWFRRNSNNTPDPNIGGQTTHKDGGVPYPDEEQPSRWKSSFFYRYW-YIVLPMALM 253 The following BLAST results are available for this feature:
BLAST of EWM28275.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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