EWM28275.1, cds2386 (CDS) Nannochloropsis gaditana

Overview
NameEWM28275.1
Unique Namecds2386
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:277884..278690 -
Alignment locationCM002459.1:277592..277738 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28275.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g25.9206.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:277884..278690 -
CM002459.1supercontigCM002459.1:277592..277738 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28275.1 vs. NCBI_GenBank
Match: gi|585110620|gb|EWM28275.1| (hypothetical protein Naga_100004g25 [Nannochloropsis gaditana])

HSP 1 Score: 644.425 bits (1661), Expect = 0.000e+0
Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0
Query:    1 MTVKAFGFLIRPHFLKTLYRQTQLRRRVNCSVLSSWASVMQRAPLLPLLLLSLARLTGGSNLVTYKLQHAFGITGAFQDRGSVEVLVDSGALTLIPPPEEQRVLVPEASLDEIAREMKGFNGGMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPPLIAIRQEDQGGQPEAPKSFLQKYWIFIVLFFLLLNTGAAPPDEGGTGGAQTGQGGPATRRGGGGGRGGKEE 317
            MTVKAFGFLIRPHFLKTLYRQTQLRRRVNCSVLSSWASVMQRAPLLPLLLLSLARLTGGSNLVTYKLQHAFGITGAFQDRGSVEVLVDSGALTLIPPPEEQRVLVPEASLDEIAREMKGFNGGMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPPLIAIRQEDQGGQPEAPKSFLQKYWIFIVLFFLLLNTGAAPPDEGGTGGAQTGQGGPATRRGGGGGRGGKEE
Sbjct:    1 MTVKAFGFLIRPHFLKTLYRQTQLRRRVNCSVLSSWASVMQRAPLLPLLLLSLARLTGGSNLVTYKLQHAFGITGAFQDRGSVEVLVDSGALTLIPPPEEQRVLVPEASLDEIAREMKGFNGGMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPPLIAIRQEDQGGQPEAPKSFLQKYWIFIVLFFLLLNTGAAPPDEGGTGGAQTGQGGPATRRGGGGGRGGKEE 317          
BLAST of EWM28275.1 vs. NCBI_GenBank
Match: gi|1210523356|dbj|GAX17993.1| (hypothetical protein FisN_18Hh206 [Fistulifera solaris])

HSP 1 Score: 75.485 bits (184), Expect = 5.229e-12
Identity = 56/220 (25.45%), Postives = 106/220 (48.18%), Query Frame = 0
Query:  105 VPEASLDEIAREMKGFNGGMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIK---HPLD-QYHARVAEEVGRRTPGDKEDSV---SSPPAFMTWVKASVDDSGKSVPVLVPGQRPPLIAIRQEDQGGQPEAPKSFLQKYW-IFIVLFFLLLNTGAAPPDEGGTGGAQTGQGGPATRRGGGGGRGGKE 316
            +P   + +I +E        Y+L+   +D  S+P ++++V  C + RA FR+   +TL  + + I + Y P +S L+P++C + +   H  D  +H+R++ E     PG    ++     PP  +T++K +     +++    PGQ        ++D       P  F+++YW I + LF +   +   PP++GG  GA   +G P    G    RG ++
Sbjct:   94 IPPDFMQQILKE-----NAFYQLKLVPNDSRSAPSILSTVPACQLRRANFRDEFVVTLGSDAQAISMTYIPLVSPLAPASCSHYEAADHDKDFVFHSRLSAET--TVPGMTLKTILPDYQPPPGLTFLKGAHLHVKEAMGDQKPGQ--------EQDNS----FPYGFMRRYWYILLPLFLMNFMSAGPPPEQGGAEGA--SEGTPTAGAGAPKRRGKRD 292          
BLAST of EWM28275.1 vs. NCBI_GenBank
Match: gi|1210523596|dbj|GAX17556.1| (hypothetical protein FisN_18Lh206 [Fistulifera solaris])

HSP 1 Score: 68.5514 bits (166), Expect = 1.183e-9
Identity = 54/209 (25.84%), Postives = 95/209 (45.45%), Query Frame = 0
Query:  124 MYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPP--LIAIR------QEDQGGQPEA-------PKSFLQKYWIFIVLFFLLLNTGAAP-PDEGGTGGAQTGQGGPATRRGGGGGRGGKE 316
             Y+L+   +D  S+P ++++V  C + RA FR+   LTL  + + I + Y P +S L+P++C          H   ++        DKE +      F + + A     G ++  ++P  +PP  L  ++      QE  G Q +        P  F+++YW  ++  FL+    A P P++GG  GA   +G P    G    RG ++
Sbjct:  109 FYQLKLVPNDSGSTPSILSTVPACQLRRANFRDEFVLTLGSDAQAISMTYIPLVSPLAPASCS---------HYEASDH-------DKEFT------FHSRLSAETTVPGMTLKTILPEYQPPPGLSFLKGAHLHVQEAMGTQKQGQEQDNSFPYGFMRRYWYILLPLFLMNFMSAGPSPEQGGAEGA--SEGTPTAGAGAPKRRGKRD 293          
BLAST of EWM28275.1 vs. NCBI_GenBank
Match: gi|298715649|emb|CBJ28175.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 64.6994 bits (156), Expect = 1.681e-8
Identity = 67/253 (26.48%), Postives = 110/253 (43.48%), Query Frame = 0
Query:   64 TYKLQHAFGITGAFQDRGSVEVLVDSGALTLIPPPEEQRVLVPEASLDEIAREMKGFNGGMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPP--LIAIRQE--DQGGQPEAPKSFLQKYWIFIVLFFLLLNTGAAPPDEGGTGGAQTGQGGPATRRGGGGGR 312
            +  ++HAFG    +  RG +E+ +D           +   L   + ++E+       N G+Y +R   +D  S+  V+ +V  C +  A FRE ITL ++ +G ++G++Y   +  L+ ST    K P+ +Y   V + V  R                         S +SVP+ V    PP  L A++++   +  +    +S L KYW +I L  +LL   +AP            QGG AT    GGGR
Sbjct:   22 SLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLRDASQMEELIA-----NDGLYLIRV-ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSLVGPLA-STRNCTKMPVAEYSEVVTKVVVVRAA-----------------------SAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVKYW-YIFLPCVLLFMFSAP-----------DQGGAATPPAAGGGR 232          
BLAST of EWM28275.1 vs. NCBI_GenBank
Match: gi|813164758|ref|XP_012203439.1| (hypothetical protein SPRG_08820 [Saprolegnia parasitica CBS 223.65] >gi|641531824|gb|KDO25878.1| hypothetical protein SPRG_08820 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 64.6994 bits (156), Expect = 2.164e-8
Identity = 68/250 (27.20%), Postives = 102/250 (40.80%), Query Frame = 0
Query:   64 TYKLQHAF---GITGAFQDRGSVEVLVDSGALTLIPPPEEQRVLVPEASLDEIAREMKGFNGGMYRLRAQESDGV-SSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGD---KEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPPLIAIRQEDQGGQPEAPKSFLQKYWIFIV-LFFLLLNTGAAPPDEGGTGGAQTGQGGPATR 305
            T  L+H+    G  G F  RG V +       T I P    ++ + E  L    + +     G Y +RA+   G   SP V+ SV  C +V+A FRE++   ++  G LI +E+  R   +   TC ++         R  +E    + G      D    P   +T  K +                PP +A  + +   +PE  +SF +KYW  IV L  +LL  G AP  +G     Q G   PA R
Sbjct:   51 TLDLEHSIAKDGAIGTFSPRGDVNIDFAPTKPTAIFP---SKLTLNEQQLSAFQKLVA--QDGFYTIRARSEPGNPKSPFVVASVPACFLVKARFREDLAFHVNEVGHLISIEF--RTPFVDTKTCSDVAK-------RNLKEATFYSTGAIFGATDGPEVPRIVITATKVAA---------------PPGVAPVRSENDPEPEEQQSFFRKYWYIIVPLLIVLLQGGDAPAAQG-----QGGSAAPARR 266          
BLAST of EWM28275.1 vs. NCBI_GenBank
Match: gi|397580198|gb|EJK51487.1| (hypothetical protein THAOC_29330 [Thalassiosira oceanica])

HSP 1 Score: 61.6178 bits (148), Expect = 3.556e-7
Identity = 68/214 (31.78%), Postives = 96/214 (44.86%), Query Frame = 0
Query:   98 PEEQRVLVPEASLDEIAR-EMKGFNG-----GMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVSSPPAFMTWVKASVDDSGKSVPVLVPGQRPP--LIAIRQEDQ---------------GGQP----EAP----KSFLQKYWIFIVLFFLLL 280
            P E+ VL    + DE A  ++  F+       +Y + A+ES G+ S  V TSV  C V R+  RE I L +   G L+ + Y P +S L+P TC  +K PL Q    +    GR     +ED V+S   F T V    +    ++P ++P QRPP  L   R+                  GG P    E P     SF  +YW +IVL   L+
Sbjct:   51 PNEEGVLQATFTPDEGATLDVNNFDSMVESKDLYTIIARES-GMKS-AVSTSVPGCSVRRSNLREEINLYIGPTGNLLSVAYRPNISPLAPKTCATLK-PLAQKPDAI---FGR----GEEDGVASRMPFKTTVSYESNKPMMAIPTVLPHQRPPPGLKWFRRNSNNTPDPNIGGQTTHKDGGVPYPDEEQPSRWKSSFFYRYW-YIVLPMALM 253          
The following BLAST results are available for this feature:
BLAST of EWM28275.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585110620|gb|EWM28275.1|0.000e+0100.00hypothetical protein Naga_100004g25 [Nannochlorops... [more]
gi|1210523356|dbj|GAX17993.1|5.229e-1225.45hypothetical protein FisN_18Hh206 [Fistulifera sol... [more]
gi|1210523596|dbj|GAX17556.1|1.183e-925.84hypothetical protein FisN_18Lh206 [Fistulifera sol... [more]
gi|298715649|emb|CBJ28175.1|1.681e-826.48conserved unknown protein [Ectocarpus siliculosus][more]
gi|813164758|ref|XP_012203439.1|2.164e-827.20hypothetical protein SPRG_08820 [Saprolegnia paras... [more]
gi|397580198|gb|EJK51487.1|3.556e-731.78hypothetical protein THAOC_29330 [Thalassiosira oc... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2394rna2394Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications