EWM28215.1, cds2378 (CDS) Nannochloropsis gaditana

Overview
NameEWM28215.1
Unique Namecds2378
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:261963..262569 -
Alignment locationCM002459.1:261782..261843 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28215.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g17.9146.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:261963..262569 -
CM002459.1supercontigCM002459.1:261782..261843 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28215.1 vs. NCBI_GenBank
Match: gi|585110560|gb|EWM28215.1| (hypothetical protein Naga_100004g17 [Nannochloropsis gaditana])

HSP 1 Score: 455.292 bits (1170), Expect = 5.009e-162
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0 
Query:    1 MGKAKKARASRHARHDPVGFPSGRTARSSSCADTEQETRQHAHQHQKAHKLLEELRSPDLARKEAAVVAMAQLLAAGDVDGDEEVAGLNGNERADRGPMRASKGSARFRALIHKLVDGGAVDLLMERMFDTASTVRLHGAGALRYVHIKNEVFGELESLMPESKGRKWPVHVSQGCNKIFATLEASRSSRLDDNLSTKIAETRIWRRCGTDASPPRWCKRAS 222
            MGKAKKARASRHARHDPVGFPSGRTARSSSCADTEQETRQHAHQHQKAHKLLEELRSPDLARKEAAVVAMAQLLAAGDVDGDEEVAGLNGNERADRGPMRASKGSARFRALIHKLVDGGAVDLLMERMFDTASTVRLHGAGALRYVHIKNEVFGELESLMPESKGRKWPVHVSQGCNKIFATLEASRSSRLDDNLSTKIAETRIWRRCGTDASPPRWCKRAS
Sbjct:    1 MGKAKKARASRHARHDPVGFPSGRTARSSSCADTEQETRQHAHQHQKAHKLLEELRSPDLARKEAAVVAMAQLLAAGDVDGDEEVAGLNGNERADRGPMRASKGSARFRALIHKLVDGGAVDLLMERMFDTASTVRLHGAGALRYVHIKNEVFGELESLMPESKGRKWPVHVSQGCNKIFATLEASRSSRLDDNLSTKIAETRIWRRCGTDASPPRWCKRAS 222
[Close]
BLAST of EWM28215.1 vs. NCBI_GenBank
Match: gi|553177231|ref|XP_005852445.1| (hypothetical protein NGA_0680300, partial [Nannochloropsis gaditana CCMP526] >gi|422296087|gb|EKU23386.1| hypothetical protein NGA_0680300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 290.812 bits (743), Expect = 5.534e-94
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 
Query:    1 MGKAKKARASRHARHDPVGFPSGRTARSSSCADTEQETRQHAHQHQKAHKLLEELRSPDLARKEAAVVAMAQLLAAGDVDGDEEVAGLNGNERADRGPMRASKGSARFRALIHKLVDGGAVDLLMERMFDTASTVRLHGAGALR 144
            MGKAKKARASRHARHDPVGFPSGRTARSSSCADTEQETRQHAHQHQKAHKLLEELRSPDLARKEAAVVAMAQLLAAGDVDGDEEVAGLNGNERADRGPMRASKGSARFRALIHKLVDGGAVDLLMERMFDTASTVRLHGAGALR
Sbjct:    1 MGKAKKARASRHARHDPVGFPSGRTARSSSCADTEQETRQHAHQHQKAHKLLEELRSPDLARKEAAVVAMAQLLAAGDVDGDEEVAGLNGNERADRGPMRASKGSARFRALIHKLVDGGAVDLLMERMFDTASTVRLHGAGALR 144
The following BLAST results are available for this feature:
BLAST of EWM28215.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110560|gb|EWM28215.1|5.009e-162100.00hypothetical protein Naga_100004g17 [Nannochlorops... [more]
gi|553177231|ref|XP_005852445.1|5.534e-94100.00hypothetical protein NGA_0680300, partial [Nannoch... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2386rna2386Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications