rna2386, rna2386 (mRNA) Nannochloropsis gaditana

Overview
Namerna2386
Unique Namerna2386
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length588
Alignment locationCM002459.1:261782..262569 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g17.9146.mrna
Orig protein idgnl|cribi|Naga_100004g17.9146
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:261782..262569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g17gene2280Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2386rna2386-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28215.1cds2378Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2386 ID=rna2386|Name=rna2386|organism=Nannochloropsis gaditana|type=mRNA|length=588bp
ATGCTCCAAAGGAACTCCTCGTTCGAAGTGCGCGTGAATGTGGCGGGGCT
GTTGGGGGGGTGTTGTCCAGTAGGGGCGGCGCCCCGCGTGGGGAAGGTGT
TGAAAGAGGCGCTAGGGACAGAAACGCATGTCTTAGCTTCCGCCAGCCTC
CTGAACGCCCTCATGGACCTATTTGGCAGGGACGAGCTGGATGCCGTGTT
CCAAGAGCTGAAGATGTTGCCCATGCTGACGAAAGTGTTGCCGGCATTCC
GCCTCAAGGCCAAGACGGAGGCGGGGAAGCATGGACGCGATGCGGTCGGT
CACGTGAAAGAAACGGCTTTGAATCTAGCGCGCTTCATCAAGTATAAACA
GAGCATCACGGAGTCTTACTCGAAAGTCGTTGACCGATACGCCGGGTGGT
CGCACGTCGTGGGAAGCCGGGGGGAAACGTGGCGAATGTCTCCCTCGGAG
ACGGCACGCACCGTCGAAGACCAGGAGGAGTTTACTATGTACGCATTTGC
TTGTATAAGGAGAGATGGGAATAATCAATGCGACGGAACAAGCGCTCCTA
TCACGAAAAGCACCTCAATTGTGAGAGCATGGTTTTGA
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protein sequence of rna2386

>rna2386-protein ID=rna2386-protein|Name=rna2386|organism=Nannochloropsis gaditana|type=polypeptide|length=222bp
MGKAKKARASRHARHDPVGFPSGRTARSSSCADTEQETRQHAHQHQKAHK
LLEELRSPDLARKEAAVVAMAQLLAAGDVDGDEEVAGLNGNERADRGPMR
ASKGSARFRALIHKLVDGGAVDLLMERMFDTASTVRLHGAGALRYVHIKN
EVFGELESLMPESKGRKWPVHVSQGCNKIFATLEASRSSRLDDNLSTKIA
ETRIWRRCGTDASPPRWCKRAS
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mRNA from alignment at CM002459.1:261782..262569-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2386 ID=rna2386|Name=rna2386|organism=Nannochloropsis gaditana|type=mRNA|length=788bp|location=Sequence derived from alignment at CM002459.1:261782..262569- (Nannochloropsis gaditana)
ATGGGGAAAGCCAAAAAGGCGCGCGCCTCGCGTCACGCCCGGCATGACCC
CGTAGGATTTCCCTCAGGCCGGACCGCGCGTTCTTCTTCCTGTGCGGATA
CAGAACAGGAAACAAGACAACATGCGCATCAACATCAAAAAGCACATAAG
CTCTTGGAGGAACTCCGGAGTCCTGATTTGGCAAGAAAGGAAGCGGCGGT
CGTAGCCATGGCTCAATTGCTTGCTGCAGGAGATGTGGATGGAGATGAGG
AGGTGGCGGGCCTAAACGGGAACGAAAGGGCGGACCGAGGGCCAATGAGG
GCTTCCAAAGGGAGTGCTCGCTTTCGGGCCCTGATTCACAAACTGGTGGA
CGGAGGCGCGGTTGATTTATTGATGGAGCGCATGTTTGATACGGCATCCA
CAGTCAGGCTGCACGGGGCAGGAGCATTACGGTACGTCCACATCAAGAAT
GAGGTTTTTGGGGAATTGGAATCCCTCATGCCTGAAAGCAAAGGGCGGAA
ATGGCCTGTGCACGTGAGTCAAGGATGCAACAAGATATTTGCTACTCTTG
AAGCGTCTCGTTCGAGTCGCCTTGATGACAACCTATCCACCAAGATCGCT
GAGACACGTGCCTCACCCGTCGCATTTCTCCTTTTCGTCTTCCACCTGAG
CACCCCTTCTCGTTCCATCCATGCTTTTCACTTATCTCCCTTCGCCCTTG
TCCCCCCCCCACCTTTGATCGGGAAGGAATATGGCGTCGCTGCGGGACCG
ACGCGTCACCTCCCAGATGGTGCAAGCGGGCGTCTTAA
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Coding sequence (CDS) from alignment at CM002459.1:261782..262569-

>rna2386 ID=rna2386|Name=rna2386|organism=Nannochloropsis gaditana|type=CDS|length=1338bp|location=Sequence derived from alignment at CM002459.1:261782..262569- (Nannochloropsis gaditana)
GAATATGGCGTCGCTGCGGGACCGACGCGTCACCTCCCAGATGGTGCAAG
CGGGCGTCTTAAATGGGGAAAGCCAAAAAGGCGCGCGCCTCGCGTCACGC
CCGGCATGACCCCGTAGGATTTCCCTCAGGCCGGACCGCGCGTTCTTCTT
CCTGTGCGGATACAGAACAGGAAACAAGACAACATGCGCATCAACATCAA
AAAGCACATAAGCTCTTGGAGGAACTCCGGAGTCCTGATTTGGCAAGAAA
GGAAGCGGCGGTCGTAGCCATGGCTCAATTGCTTGCTGCAGGAGATGTGG
ATGGAGATGAGGAGGTGGCGGGCCTAAACGGGAACGAAAGGGCGGACCGA
GGGCCAATGAGGGCTTCCAAAGGGAGTGCTCGCTTTCGGGCCCTGATTCA
CAAACTGGTGGACGGAGGCGCGGTTGATTTATTGATGGAGCGCATGTTTG
ATACGGCATCCACAGTCAGGCTGCACGGGGCAGGAGCATTACGGTACGTC
CACATCAAGAATGAGGTTTTTGGGGAATTGGAATCCCTCATGCCTGAAAG
CAAAGGGCGGAAATGGCCTGTGCACGTGAGTCAAGGATGCAACAAGATAT
TTGCTACTCTTGAAGCGTCTCGTTCGAGTCGCCTTGATGACAACCTATCC
ACCAAGATCGCTGAGACACGAATATGGCGTCGCTGCGGGACCGACGCGTC
ACCTCCCAGATGGTGCAAGCGGGCGTCTTAAATGGGGAAAGCCAAAAAGG
CGCGCGCCTCGCGTCACGCCCGGCATGACCCCGTAGGATTTCCCTCAGGC
CGGACCGCGCGTTCTTCTTCCTGTGCGGATACAGAACAGGAAACAAGACA
ACATGCGCATCAACATCAAAAAGCACATAAGCTCTTGGAGGAACTCCGGA
GTCCTGATTTGGCAAGAAAGGAAGCGGCGGTCGTAGCCATGGCTCAATTG
CTTGCTGCAGGAGATGTGGATGGAGATGAGGAGGTGGCGGGCCTAAACGG
GAACGAAAGGGCGGACCGAGGGCCAATGAGGGCTTCCAAAGGGAGTGCTC
GCTTTCGGGCCCTGATTCACAAACTGGTGGACGGAGGCGCGGTTGATTTA
TTGATGGAGCGCATGTTTGATACGGCATCCACAGTCAGGCTGCACGGGGC
AGGAGCATTACGGTACGTCCACATCAAGAATGAGGTTTTTGGGGAATTGG
AATCCCTCATGCCTGAAAGCAAAGGGCGGAAATGGCCTGTGCACGTGAGT
CAAGGATGCAACAAGATATTTGCTACTCTTGAAGCGTCTCGTTCGAGTCG
CCTTGATGACAACCTATCCACCAAGATCGCTGAGACAC
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Synonyms
Publications