rna2379, rna2379 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2379
Unique Name	rna2379
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1599
Alignment location	CM002459.1:244364..245949 -

Link to JBrowse

Properties


Property Name	Value
Product	dimethyl-8-ribityllumazine synthase
Orig transcript id	gnl\|cribi\|Naga_100004g9.9184.mrna
Orig protein id	gnl\|cribi\|Naga_100004g9.9184
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:244364..245949 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g9	gene2274	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2379	rna2379-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28253.1	cds2371	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:244364..245949-
coding sequence from alignment at CM002459.1:244364..245949-

mRNA sequence

>rna2379 ID=rna2379|Name=rna2379|organism=Nannochloropsis gaditana|type=mRNA|length=1599bp
TGATATGTCACTTGTGCGACGGCGAGTGGTGGTATCAGGTATAGGGATTA
TAAGCCCGCTGGGGATAGGTAGGAAGGCAACATGGGATGCCCTGCTAGCC
GGTCGAATCGGGGTCCGTGCATTGGACGCAGAGAAGGACAAAATACCTGA
ATTGCCTGCATTACCAGCTCGGATTGCTGCCACGGTCGATCAAGCACAGG
TCAGGCCTCCTCCCGGAGAGGAGGGCAATTGGCCTCGCCTCTCCCCTTTC
ATCCGGTACGCCCTCCTAGCCGCCGAGGAGGCTTTACATCACGCGCAGTG
GCATCCGCGCACTTCGCATGACAAGGAACGCACTGGAGTATATATTGGCA
CGGGAATCGGATGTCTGGAAGAGATTGTGGAGGCGCAGCGTGTCATGGCA
TCAGGAGGGGGGATCCGCCGTGTGAGTCCTCATTTCGTCCCTAAAATTCT
GGGTAATCTGGCCACGGGAAATGTCAGCATTCGGCATGGCTTGCAGGGGC
CGAATCATGCATCCATCACTGCCTGCGCCAGTGGAGCCCACGCGATCGGG
GATGCCTTCCGGCTCGTCCAATACGGGGACGCGGATGTGATGGTGGCGGG
GGGGACGGAAGCCTGTATCAACGCCCTCTGTCTGGGAGGGTTCTCAAGAC
TCCGTGCATTGAGCACCCGGTACAACGACGAGCCAGAGCGGGCATCACGG
CCTTTCGACGCCGACAGGGACGGATTTGTGGTGGGAGAAGGGGCGGCCGT
GCTCGTTTTGGAAGAGAGGGAGCATGCTCTGGCCAGGGGTGTGAAGCCGT
TGGCGGAAATCGTCGGTTATGGAATGGCAGGGGACGCACACCACATCACG
GCACCTTCCCCGGACGGCGGGGGCGCCTTTCGCGCAATGCGAGCTGCGTT
GGGCAGCGCCAAGGAGGTGGGCGGGGTGCGATTGTGGGAGGTCGGTCATG
TGAACGCGCACGCGACCTCGACGCCCGTGGGGGATGTGATCGAGGGGCAG
GCCTTGCAACGTCTCTGGGAGGAGCACTGCAGGCAAGATAAGAGGGGCGC
GGGGAGGAATGCCAGGATGGACGTGTCGGCGACAAAGGGGGCGACGGGGC
ACTTGCTAGGCGCTGCGGGGGCGTTGGAGTCGGCCTTCACGGTGCTGGCT
TTGCGGGACGGCGTGGTTCCAGGGACCGCGAATTTAGAAAGGTAAGAGGG
GGAGGATAGAGGTCAGAGAGTCTTTTTTAAGGATCGGGACGGGAGAAAAG
CGGAAAACTGAGAGAGGTACTTCGTCAAGACATTCGAGAGAGATGTATCA
AGACGCCAGGGTGCCGTTTTTTTTTACACCATTGCTTGGCTGCTCCCCCC
TTGACCATGCAGGCCTGACAGCGTCGCCAAAGCCTGGGACTTCCAAATCG
TCGGACAGAGCCCACAGAGCCCCCATCTTCTGCGGCCCGACATGGAGTAC
GCCCTCTCTAATTCCTTTGGCTTCGGCGGGGTCAATGTGTCCTTGCTTTT
CCGCCGCTGTACATAGGAGGAGCCCGTGTTTTAAAATTTACCCGTCATTG
ACGAGAACACGTGGCACAATAAAAAGCAAATTAAACTTACATTGTACAT

protein sequence of rna2379

>rna2379-protein ID=rna2379-protein|Name=rna2379|organism=Nannochloropsis gaditana|type=polypeptide|length=255bp
MRRVLNYRHHLFYSFLLLFFSPVSPKGMVRLPTIVAVACLLQGIAAFVTP
RPVLLSPARPSMRVNPLMMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVD
SLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITI
GCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARS
KGENNHGISWGKTAVEMALLRNAALAKGPNRATLPLTEKLEDTPEEKKQS
KQFGF

mRNA from alignment at CM002459.1:244364..245949-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2379 ID=rna2379|Name=rna2379|organism=Nannochloropsis gaditana|type=mRNA|length=1586bp|location=Sequence derived from alignment at CM002459.1:244364..245949- (Nannochloropsis gaditana)
GTTATATCTTAAGGACGCGATGTGTCCGCCCTAGCAGGTACATATTTGCC
TTGAAAGACCGGCCTGCGCGTACGACAGAGCATGTTGAGGCACGCGTTTG
GATTTACAATGTCTTCTTATACGTAGAGGACTGGCGGGCACCCCGACGTC
GCAACACGTTTTTCTGTGACCTTCTCCTCACCAACCGGGCAGGCAATTGA
TTTACAGGCTTGATTCGCTCATGCGACGCGTTTTAAATTATCGACATCAT
CTATTTTATTCCTTTCTCTTACTTTTTTTCTCTCCCGTAAGCCCGAAAGG
TATGGTGCGCCTTCCCACGATCGTAGCGGTAGCCTGTCTCCTCCAAGGTA
TTGCCGCCTTTGTCACCCCGCGACCCGTACTTTTGAGCCCAGCGAGGCCC
TCAATGGTGAGTGGGGTATACAAATGCTTTCAAACGTAATTGCCGTGCAG
CTTTCGGTCGTTCTTCCTCTGGTTAGACGCACATAGCCTCTGAGTCCACG
CTGTGGAACAAGAGCTCTGACTCCTCGTGATCCCGCTCTTTAACCCCTTT
TCTCGGTACTGCCTCCAGCGCGTCAATCCCCTCATGATGTCCAAGGATCT
CGTCGGATTTGGGGACGACTTGGACGGGTCCACGTGCCGCATTGGCATCG
TGAAGACACGCTGGAATCCCGAGATTGTCGATTCCCTCTATGAAGGCGTC
CGCGCCGCTTTGAACGAGACTGGCGTCAAGGACGAAAATGTCTACGACAC
AACCGTGCCAGGGTCTTTTGAATTGCCCTTGGCGGCCCGGTTTTTGGCAC
TGTCGAGGCAGTGCGACGTGGTGATCACGATCGGATGTTTGATCAAGGGG
GAGACAATGCATTTCGAGTACATCGCCGAGGCTGTCACCAAAGGGTTGAT
GGATGTAAGTCACGCCCAATGCTGCGCTAGTCAAGAACGTGCTTAGGGTC
ATCTGGTCCGACCTCGACCTTCTCTCATCGGTCCTACGCCTCTATTTCAC
AGATTCAACTGCAAACGACCATTCCTGTCATTTTTGGCGTGCTTACGGTG
CTTACAGAGGAGCAGGCCGTTGCACGTTCGAAGGGGGAAAACAATCACGG
CATTTCGTGGGGGAAGACCGCAGTGGAAATGGCGCTGTTGCGCAATGCAG
CTTTAGCCAAGGGACCGAATAGGGTAAGAGCCAACGAGTGCTGGGAAAGC
TGGCATTAATGTCATTCATCCATGCTTCGCGTGGCATTTATTGATGCATT
TGGAATACACGTGTGACTGCAATGTTTTTCGATGGCATTCATTGCGTCAG
AGCACGCGTCTGACTCTCATATGCCTTCCTACCAGGCGACACTACCTTTG
ACAGAGAAGCTGGAGGACACGCCGGAGGAGAAGAAGCAGTCCAAACAATT
TGGCTTTTGAACATGATTTCATTTAGCCTTTGCAGTCATACCTGCTCCGC
ATGGTGGGATTCTCATAGCGTAGAGTCGTTGCAAACGGCGGAAAGAAAGT
TCTAGCTCATCAAATGTATGTGTACATGCACACGGATTGCGAGAAACATA
AAAGAAAGCCCTGCTTAGTTTGAAAGATAAAGCTGT

Coding sequence (CDS) from alignment at CM002459.1:244364..245949-

>rna2379 ID=rna2379|Name=rna2379|organism=Nannochloropsis gaditana|type=CDS|length=3072bp|location=Sequence derived from alignment at CM002459.1:244364..245949- (Nannochloropsis gaditana)
GCGACACTACCTTTGACAGAGAAGCTGGAGGACACGCCGGAGGAGAAGAA
GCAGTCCAAACAATTTGGCTTTTGAATTCAACTGCAAACGACCATTCCTG
TCATTTTTGGCGTGCTTACGGTGCTTACAGAGGAGCAGGCCGTTGCACGT
TCGAAGGGGGAAAACAATCACGGCATTTCGTGGGGGAAGACCGCAGTGGA
AATGGCGCTGTTGCGCAATGCAGCTTTAGCCAAGGGACCGAATAGGCGCG
TCAATCCCCTCATGATGTCCAAGGATCTCGTCGGATTTGGGGACGACTTG
GACGGGTCCACGTGCCGCATTGGCATCGTGAAGACACGCTGGAATCCCGA
GATTGTCGATTCCCTCTATGAAGGCGTCCGCGCCGCTTTGAACGAGACTG
GCGTCAAGGACGAAAATGTCTACGACACAACCGTGCCAGGGTCTTTTGAA
TTGCCCTTGGCGGCCCGGTTTTTGGCACTGTCGAGGCAGTGCGACGTGGT
GATCACGATCGGATGTTTGATCAAGGGGGAGACAATGCATTTCGAGTACA
TCGCCGAGGCTGTCACCAAAGGGTTGATGGATATGCGACGCGTTTTAAAT
TATCGACATCATCTATTTTATTCCTTTCTCTTACTTTTTTTCTCTCCCGT
AAGCCCGAAAGGTATGGTGCGCCTTCCCACGATCGTAGCGGTAGCCTGTC
TCCTCCAAGGTATTGCCGCCTTTGTCACCCCGCGACCCGTACTTTTGAGC
CCAGCGAGGCCCTCAATGGCGACACTACCTTTGACAGAGAAGCTGGAGGA
CACGCCGGAGGAGAAGAAGCAGTCCAAACAATTTGGCTTTTGAATTCAAC
TGCAAACGACCATTCCTGTCATTTTTGGCGTGCTTACGGTGCTTACAGAG
GAGCAGGCCGTTGCACGTTCGAAGGGGGAAAACAATCACGGCATTTCGTG
GGGGAAGACCGCAGTGGAAATGGCGCTGTTGCGCAATGCAGCTTTAGCCA
AGGGACCGAATAGGCGCGTCAATCCCCTCATGATGTCCAAGGATCTCGTC
GGATTTGGGGACGACTTGGACGGGTCCACGTGCCGCATTGGCATCGTGAA
GACACGCTGGAATCCCGAGATTGTCGATTCCCTCTATGAAGGCGTCCGCG
CCGCTTTGAACGAGACTGGCGTCAAGGACGAAAATGTCTACGACACAACC
GTGCCAGGGTCTTTTGAATTGCCCTTGGCGGCCCGGTTTTTGGCACTGTC
GAGGCAGTGCGACGTGGTGATCACGATCGGATGTTTGATCAAGGGGGAGA
CAATGCATTTCGAGTACATCGCCGAGGCTGTCACCAAAGGGTTGATGGAT
ATGCGACGCGTTTTAAATTATCGACATCATCTATTTTATTCCTTTCTCTT
ACTTTTTTTCTCTCCCGTAAGCCCGAAAGGTATGGTGCGCCTTCCCACGA
TCGTAGCGGTAGCCTGTCTCCTCCAAGGTATTGCCGCCTTTGTCACCCCG
CGACCCGTACTTTTGAGCCCAGCGAGGCCCTCAATGGCGACACTACCTTT
GACAGAGAAGCTGGAGGACACGCCGGAGGAGAAGAAGCAGTCCAAACAAT
TTGGCTTTTGAATTCAACTGCAAACGACCATTCCTGTCATTTTTGGCGTG
CTTACGGTGCTTACAGAGGAGCAGGCCGTTGCACGTTCGAAGGGGGAAAA
CAATCACGGCATTTCGTGGGGGAAGACCGCAGTGGAAATGGCGCTGTTGC
GCAATGCAGCTTTAGCCAAGGGACCGAATAGGCGCGTCAATCCCCTCATG
ATGTCCAAGGATCTCGTCGGATTTGGGGACGACTTGGACGGGTCCACGTG
CCGCATTGGCATCGTGAAGACACGCTGGAATCCCGAGATTGTCGATTCCC
TCTATGAAGGCGTCCGCGCCGCTTTGAACGAGACTGGCGTCAAGGACGAA
AATGTCTACGACACAACCGTGCCAGGGTCTTTTGAATTGCCCTTGGCGGC
CCGGTTTTTGGCACTGTCGAGGCAGTGCGACGTGGTGATCACGATCGGAT
GTTTGATCAAGGGGGAGACAATGCATTTCGAGTACATCGCCGAGGCTGTC
ACCAAAGGGTTGATGGATATGCGACGCGTTTTAAATTATCGACATCATCT
ATTTTATTCCTTTCTCTTACTTTTTTTCTCTCCCGTAAGCCCGAAAGGTA
TGGTGCGCCTTCCCACGATCGTAGCGGTAGCCTGTCTCCTCCAAGGTATT
GCCGCCTTTGTCACCCCGCGACCCGTACTTTTGAGCCCAGCGAGGCCCTC
AATGGCGACACTACCTTTGACAGAGAAGCTGGAGGACACGCCGGAGGAGA
AGAAGCAGTCCAAACAATTTGGCTTTTGAATTCAACTGCAAACGACCATT
CCTGTCATTTTTGGCGTGCTTACGGTGCTTACAGAGGAGCAGGCCGTTGC
ACGTTCGAAGGGGGAAAACAATCACGGCATTTCGTGGGGGAAGACCGCAG
TGGAAATGGCGCTGTTGCGCAATGCAGCTTTAGCCAAGGGACCGAATAGG
CGCGTCAATCCCCTCATGATGTCCAAGGATCTCGTCGGATTTGGGGACGA
CTTGGACGGGTCCACGTGCCGCATTGGCATCGTGAAGACACGCTGGAATC
CCGAGATTGTCGATTCCCTCTATGAAGGCGTCCGCGCCGCTTTGAACGAG
ACTGGCGTCAAGGACGAAAATGTCTACGACACAACCGTGCCAGGGTCTTT
TGAATTGCCCTTGGCGGCCCGGTTTTTGGCACTGTCGAGGCAGTGCGACG
TGGTGATCACGATCGGATGTTTGATCAAGGGGGAGACAATGCATTTCGAG
TACATCGCCGAGGCTGTCACCAAAGGGTTGATGGATATGCGACGCGTTTT
AAATTATCGACATCATCTATTTTATTCCTTTCTCTTACTTTTTTTCTCTC
CCGTAAGCCCGAAAGGTATGGTGCGCCTTCCCACGATCGTAGCGGTAGCC
TGTCTCCTCCAAGGTATTGCCGCCTTTGTCACCCCGCGACCCGTACTTTT
GAGCCCAGCGAGGCCCTCAATG

Synonyms

Publications