EWM28253.1, cds2371 (CDS) Nannochloropsis gaditana

Overview
NameEWM28253.1
Unique Namecds2371
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:245544..245729 -
Alignment locationCM002459.1:245046..245381 -
Alignment locationCM002459.1:244777..244947 -
Alignment locationCM002459.1:244540..244614 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28253.1
Productdimethyl-8-ribityllumazine synthase
Orig transcript idgnl|cribi|Naga_100004g9.9184.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:245544..245729 -
CM002459.1supercontigCM002459.1:245046..245381 -
CM002459.1supercontigCM002459.1:244777..244947 -
CM002459.1supercontigCM002459.1:244540..244614 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0009231riboflavin biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0009349riboflavin synthase complex
Vocabulary: INTERPRO
TermDefinition
IPR002180DMRL_synthase
Homology
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|585110598|gb|EWM28253.1| (dimethyl-8-ribityllumazine synthase [Nannochloropsis gaditana])

HSP 1 Score: 526.939 bits (1356), Expect = 0.000e+0
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query:    1 MRRVLNYRHHLFYSFLLLFFSPVSPKGMVRLPTIVAVACLLQGIAAFVTPRPVLLSPARPSMRVNPLMMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAKGPNRATLPLTEKLEDTPEEKKQSKQFGF 255
            MRRVLNYRHHLFYSFLLLFFSPVSPKGMVRLPTIVAVACLLQGIAAFVTPRPVLLSPARPSMRVNPLMMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAKGPNRATLPLTEKLEDTPEEKKQSKQFGF
Sbjct:    1 MRRVLNYRHHLFYSFLLLFFSPVSPKGMVRLPTIVAVACLLQGIAAFVTPRPVLLSPARPSMRVNPLMMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAKGPNRATLPLTEKLEDTPEEKKQSKQFGF 255          
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|1210523343|dbj|GAX17980.1| (6,7-dimethyl-8-ribityllumazine synthase [Fistulifera solaris])

HSP 1 Score: 213.772 bits (543), Expect = 2.520e-66
Identity = 112/220 (50.91%), Postives = 143/220 (65.00%), Query Frame = 0
Query:   40 LLQGIAAFVTPRPVLLSPARPSMRVNPLMMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALA--KGPNR----ATLPLTEKLEDTPEEKKQSKQF 253
            +   I AFV   P+L S          L  +   V F D+LDGS  RIGI+KTRWN E V++L  G++  L E  V D N+++T+VPGSFELP+AARFLAL+  CD +IT G LIKG+TMHFE+IA+AV KG+M+I LQT+ PV+FGVLT   E+Q   RS G+NNHG  WGKTAVEMALLR  AL   KG       A +   +  ED+  ++K+S  F
Sbjct:    1 MASSIQAFVVQTPLLSSK-------TALQAADSDVSF-DNLDGSQMRIGIIKTRWNEEHVNNLVAGIKKGLKECKVSDTNIFETSVPGSFELPMAARFLALTGTCDAIITTGVLIKGDTMHFEFIADAVAKGIMNIGLQTSTPVVFGVLTCQNEQQVKDRSTGDNNHGYDWGKTAVEMALLRTEALGGKKGEESKEMLAAMGFGKADEDSASKEKKSAFF 212          
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|299472140|emb|CBN77125.1| (6,7-dimethyl-8-ribityllumazine synthase [Ectocarpus siliculosus])

HSP 1 Score: 211.846 bits (538), Expect = 6.418e-65
Identity = 102/195 (52.31%), Postives = 136/195 (69.74%), Query Frame = 0
Query:   68 MMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAKGPNR-ATLPLTEKLEDTPEEKKQS------KQFGF 255
            MM+ + V FG+ LDG+  R+GI+ TRWN EIV+ L +GV+ +L E  V + N+++T VPG+FELPLAARFL+LS+  D V+ +GCLIKG+TMHFEYIAE+  KGLMD+ +QT+ PV+ GVLT   EEQA+ RS G+NNHG+ WGKTAVEM LLR +A   G      L   + L+D  + K  +      K+ GF
Sbjct:   58 MMAAEGVTFGE-LDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTESNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKAGGALGFGKSLDDKKDGKDGAIPGSKPKKIGF 251          
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|1210523583|dbj|GAX17543.1| (6,7-dimethyl-8-ribityllumazine synthase [Fistulifera solaris])

HSP 1 Score: 199.134 bits (505), Expect = 5.364e-61
Identity = 97/174 (55.75%), Postives = 124/174 (71.26%), Query Frame = 0
Query:   86 RIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALA--KGPNR----ATLPLTEKLEDTPEEKKQSKQF 253
            RIGI+KTRWN E V++L  G++  L E  V D N+++T+VPGSFELP+AARFLAL+  CD +IT G LIKG+TMHFE+IA+AV KG+M+I LQT+ PV+FGVLT   E+Q   RS G+NNHG  WGKTAVEMALLR  AL   KG       A +   +  ED+  ++K+S  F
Sbjct:    2 RIGIIKTRWNEEHVNNLVAGIKKGLKECKVSDTNIFETSVPGSFELPMAARFLALTGTCDAIITTGVLIKGDTMHFEFIADAVAKGIMNIGLQTSTPVVFGVLTCQNEQQVKDRSTGDNNHGYDWGKTAVEMALLRTEALGGKKGEESKEMLAAMGFGKADEDSASKEKKSAFF 175          
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|1072237523|gb|OEU22250.1| (Lumazine synthase, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 195.282 bits (495), Expect = 5.334e-60
Identity = 88/141 (62.41%), Postives = 112/141 (79.43%), Query Frame = 0
Query:   79 DLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMAL 219
            DLDGS  RIGI++TRWN E V +L +G R AL E  VK+EN+++T++PG++ELPL+ARFLALS   D ++T G LIKGETMHFEYI++AV+ GLM +QLQTT P+++GVL  L E Q  +RS G+NNHG  WGKTAVEMAL
Sbjct:    1 DLDGSDIRIGIIRTRWNDEHVTNLVDGCRKALKECNVKEENIFETSIPGAYELPLSARFLALSGTVDAIVTAGVLIKGETMHFEYISDAVSSGLMSVQLQTTCPIVYGVLNCLDEGQVKSRSSGDNNHGEDWGKTAVEMAL 141          
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|219117129|ref|XP_002179359.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409250|gb|EEC49182.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 194.512 bits (493), Expect = 1.181e-59
Identity = 89/141 (63.12%), Postives = 113/141 (80.14%), Query Frame = 0
Query:   79 DLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMAL 219
            DLDGS  RIGI++TRWN E V +L +G++  L    V+++N+++T+VPG+FELP+AARFLALS   D +IT G LIKGETMHFEYI++AV KG+M+I LQT+ PVIFGVLT L E Q  ARS G++NHG+ WGKTAVEMAL
Sbjct:    3 DLDGSAMRIGIIRTRWNDEHVTNLVDGIKEGLRACQVEEDNIFETSVPGAFELPMAARFLALSGTVDAIITTGVLIKGETMHFEYISDAVAKGIMNIGLQTSTPVIFGVLTCLDEAQVQARSSGDSNHGVDWGKTAVEMAL 143          
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|873224219|emb|CEM26950.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 194.897 bits (494), Expect = 6.644e-58
Identity = 90/148 (60.81%), Postives = 114/148 (77.03%), Query Frame = 0
Query:   80 LDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAK 227
            L+GS  +IGI+KTRWN +IVD+L +GV+  L E  V  EN+ +  VPGS+ELPLA RFLALS Q D +++IG LIKG+T+HFEYIAE+V+ GLM++QLQT  P +FGVLT L   QA  RS G +NHGISWGKTAVEM++LR  AL +
Sbjct:   77 LNGSDVKIGIIKTRWNKDIVDNLVKGVKEGLTECSVPAENILEIEVPGSYELPLATRFLALSNQVDAIVSIGVLIKGDTLHFEYIAESVSNGLMNVQLQTMTPTVFGVLTCLNLNQAKERSSGPDNHGISWGKTAVEMSVLRRYALGR 224          
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|551573024|ref|XP_005772319.1| (hypothetical protein EMIHUDRAFT_444779 [Emiliania huxleyi CCMP1516] >gi|551604111|ref|XP_005783542.1| hypothetical protein EMIHUDRAFT_434395 [Emiliania huxleyi CCMP1516] >gi|485623758|gb|EOD19890.1| hypothetical protein EMIHUDRAFT_444779 [Emiliania huxleyi CCMP1516] >gi|485636526|gb|EOD31113.1| hypothetical protein EMIHUDRAFT_434395 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 191.43 bits (485), Expect = 2.369e-57
Identity = 91/181 (50.28%), Postives = 128/181 (70.72%), Query Frame = 0
Query:   76 FGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAKGPNRATLPLTEKLEDTPEE-KKQSKQFGF 255
            FGD LDGST RIGI+K RW+PE+ DSL  G + AL   GVK+EN+ +T VPGS+ELPLAAR++ALS   D ++ +G LIKG+T HFE I+++V+ GLM + +QT +P++FGVLT ++EEQA  RS G  NHG  WG+ AVEMALLR +A+    ++  +   +  ED  +   + +++ GF
Sbjct:   39 FGD-LDGSTARIGIIKARWHPEMSDSLIAGAKEALAACGVKEENIVETEVPGSYELPLAARYMALSGSVDAILPVGILIKGDTYHFEAISDSVSSGLMSVGMQTGVPILFGVLTCMSEEQARVRSIGPGNHGPDWGRAAVEMALLRQSAVGGPKSKFFMGFGDSGEDDAKPMTRPAERIGF 218          
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|551648624|ref|XP_005827094.1| (hypothetical protein GUITHDRAFT_154245 [Guillardia theta CCMP2712] >gi|428171195|gb|EKX40114.1| hypothetical protein GUITHDRAFT_154245 [Guillardia theta CCMP2712])

HSP 1 Score: 172.17 bits (435), Expect = 9.100e-50
Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 0
Query:   80 LDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAKGPNRAT 233
            LDG   R+GIV TRWN E+V+ L +G RA L E  V+D NV +  VPGS+ELPLA R++A +++ D +I IG L+KGET H++ I +A T  LM + L+T IPV+ G+L   T EQA AR+ G+NNHG+ WGKTA+EMA LR   + KGP  A+
Sbjct:   68 LDGKGMRVGIVSTRWNAEVVNKLKDGARAGLKECQVEDSNVVEFEVPGSWELPLACRYMAQTQKVDAIIAIGVLVKGETDHYDMIKDAATDALMMLGLETGIPVLNGILGCHTMEQAEARATGDNNHGVWWGKTAIEMATLRATQMGKGPIAAS 221          
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|397629939|gb|EJK69564.1| (hypothetical protein THAOC_09164 [Thalassiosira oceanica])

HSP 1 Score: 169.859 bits (429), Expect = 3.019e-49
Identity = 82/163 (50.31%), Postives = 112/163 (68.71%), Query Frame = 0
Query:   68 MMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARS---KGENNHGISWGKTAVEMALLRNAALAK 227
            M ++  V F  +LDGS  RIG+++TRWN E V +L +G++A   E  V+ +N++   VPG++ELP AAR LA+S   D ++  G LIKGET+HFEYI++AV+ G+MD+ L T  PV++GVL  L EEQ + RS    G +NHG  WGKTAVEMAL+R  A  K
Sbjct:    1 MAAESEVSF-SELDGSGVRIGVLRTRWNDEHVSNLVDGIKAGCAECKVEPDNIFVKEVPGAYELPYAARLLAMSGTVDAIVCCGVLIKGETLHFEYISDAVSAGIMDVSLGTMTPVVYGVLNCLDEEQVMKRSSNLNGGHNHGEDWGKTAVEMALMRKEAFGK 162          
The following BLAST results are available for this feature:
BLAST of EWM28253.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110598|gb|EWM28253.1|0.000e+0100.00dimethyl-8-ribityllumazine synthase [Nannochlorops... [more]
gi|1210523343|dbj|GAX17980.1|2.520e-6650.916,7-dimethyl-8-ribityllumazine synthase [Fistulife... [more]
gi|299472140|emb|CBN77125.1|6.418e-6552.316,7-dimethyl-8-ribityllumazine synthase [Ectocarpu... [more]
gi|1210523583|dbj|GAX17543.1|5.364e-6155.756,7-dimethyl-8-ribityllumazine synthase [Fistulife... [more]
gi|1072237523|gb|OEU22250.1|5.334e-6062.41Lumazine synthase, partial [Fragilariopsis cylindr... [more]
gi|219117129|ref|XP_002179359.1|1.181e-5963.12predicted protein, partial [Phaeodactylum tricornu... [more]
gi|873224219|emb|CEM26950.1|6.644e-5860.81unnamed protein product [Vitrella brassicaformis C... [more]
gi|551573024|ref|XP_005772319.1|2.369e-5750.28hypothetical protein EMIHUDRAFT_444779 [Emiliania ... [more]
gi|551648624|ref|XP_005827094.1|9.100e-5052.60hypothetical protein GUITHDRAFT_154245 [Guillardia... [more]
gi|397629939|gb|EJK69564.1|3.019e-4950.31hypothetical protein THAOC_09164 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2379rna2379Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications