EWM28253.1, cds2371 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|585110598|gb|EWM28253.1| (dimethyl-8-ribityllumazine synthase [Nannochloropsis gaditana]) HSP 1 Score: 526.939 bits (1356), Expect = 0.000e+0 Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query: 1 MRRVLNYRHHLFYSFLLLFFSPVSPKGMVRLPTIVAVACLLQGIAAFVTPRPVLLSPARPSMRVNPLMMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAKGPNRATLPLTEKLEDTPEEKKQSKQFGF 255
MRRVLNYRHHLFYSFLLLFFSPVSPKGMVRLPTIVAVACLLQGIAAFVTPRPVLLSPARPSMRVNPLMMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAKGPNRATLPLTEKLEDTPEEKKQSKQFGF
Sbjct: 1 MRRVLNYRHHLFYSFLLLFFSPVSPKGMVRLPTIVAVACLLQGIAAFVTPRPVLLSPARPSMRVNPLMMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAKGPNRATLPLTEKLEDTPEEKKQSKQFGF 255
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|1210523343|dbj|GAX17980.1| (6,7-dimethyl-8-ribityllumazine synthase [Fistulifera solaris]) HSP 1 Score: 213.772 bits (543), Expect = 2.520e-66 Identity = 112/220 (50.91%), Postives = 143/220 (65.00%), Query Frame = 0
Query: 40 LLQGIAAFVTPRPVLLSPARPSMRVNPLMMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALA--KGPNR----ATLPLTEKLEDTPEEKKQSKQF 253
+ I AFV P+L S L + V F D+LDGS RIGI+KTRWN E V++L G++ L E V D N+++T+VPGSFELP+AARFLAL+ CD +IT G LIKG+TMHFE+IA+AV KG+M+I LQT+ PV+FGVLT E+Q RS G+NNHG WGKTAVEMALLR AL KG A + + ED+ ++K+S F
Sbjct: 1 MASSIQAFVVQTPLLSSK-------TALQAADSDVSF-DNLDGSQMRIGIIKTRWNEEHVNNLVAGIKKGLKECKVSDTNIFETSVPGSFELPMAARFLALTGTCDAIITTGVLIKGDTMHFEFIADAVAKGIMNIGLQTSTPVVFGVLTCQNEQQVKDRSTGDNNHGYDWGKTAVEMALLRTEALGGKKGEESKEMLAAMGFGKADEDSASKEKKSAFF 212
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|299472140|emb|CBN77125.1| (6,7-dimethyl-8-ribityllumazine synthase [Ectocarpus siliculosus]) HSP 1 Score: 211.846 bits (538), Expect = 6.418e-65 Identity = 102/195 (52.31%), Postives = 136/195 (69.74%), Query Frame = 0
Query: 68 MMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAKGPNR-ATLPLTEKLEDTPEEKKQS------KQFGF 255
MM+ + V FG+ LDG+ R+GI+ TRWN EIV+ L +GV+ +L E V + N+++T VPG+FELPLAARFL+LS+ D V+ +GCLIKG+TMHFEYIAE+ KGLMD+ +QT+ PV+ GVLT EEQA+ RS G+NNHG+ WGKTAVEM LLR +A G L + L+D + K + K+ GF
Sbjct: 58 MMAAEGVTFGE-LDGTDVRVGIISTRWNEEIVNRLTDGVKESLKECNVTESNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKAGGALGFGKSLDDKKDGKDGAIPGSKPKKIGF 251
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|1210523583|dbj|GAX17543.1| (6,7-dimethyl-8-ribityllumazine synthase [Fistulifera solaris]) HSP 1 Score: 199.134 bits (505), Expect = 5.364e-61 Identity = 97/174 (55.75%), Postives = 124/174 (71.26%), Query Frame = 0
Query: 86 RIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALA--KGPNR----ATLPLTEKLEDTPEEKKQSKQF 253
RIGI+KTRWN E V++L G++ L E V D N+++T+VPGSFELP+AARFLAL+ CD +IT G LIKG+TMHFE+IA+AV KG+M+I LQT+ PV+FGVLT E+Q RS G+NNHG WGKTAVEMALLR AL KG A + + ED+ ++K+S F
Sbjct: 2 RIGIIKTRWNEEHVNNLVAGIKKGLKECKVSDTNIFETSVPGSFELPMAARFLALTGTCDAIITTGVLIKGDTMHFEFIADAVAKGIMNIGLQTSTPVVFGVLTCQNEQQVKDRSTGDNNHGYDWGKTAVEMALLRTEALGGKKGEESKEMLAAMGFGKADEDSASKEKKSAFF 175
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|1072237523|gb|OEU22250.1| (Lumazine synthase, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 195.282 bits (495), Expect = 5.334e-60 Identity = 88/141 (62.41%), Postives = 112/141 (79.43%), Query Frame = 0
Query: 79 DLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMAL 219
DLDGS RIGI++TRWN E V +L +G R AL E VK+EN+++T++PG++ELPL+ARFLALS D ++T G LIKGETMHFEYI++AV+ GLM +QLQTT P+++GVL L E Q +RS G+NNHG WGKTAVEMAL
Sbjct: 1 DLDGSDIRIGIIRTRWNDEHVTNLVDGCRKALKECNVKEENIFETSIPGAYELPLSARFLALSGTVDAIVTAGVLIKGETMHFEYISDAVSSGLMSVQLQTTCPIVYGVLNCLDEGQVKSRSSGDNNHGEDWGKTAVEMAL 141
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|219117129|ref|XP_002179359.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409250|gb|EEC49182.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 194.512 bits (493), Expect = 1.181e-59 Identity = 89/141 (63.12%), Postives = 113/141 (80.14%), Query Frame = 0
Query: 79 DLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMAL 219
DLDGS RIGI++TRWN E V +L +G++ L V+++N+++T+VPG+FELP+AARFLALS D +IT G LIKGETMHFEYI++AV KG+M+I LQT+ PVIFGVLT L E Q ARS G++NHG+ WGKTAVEMAL
Sbjct: 3 DLDGSAMRIGIIRTRWNDEHVTNLVDGIKEGLRACQVEEDNIFETSVPGAFELPMAARFLALSGTVDAIITTGVLIKGETMHFEYISDAVAKGIMNIGLQTSTPVIFGVLTCLDEAQVQARSSGDSNHGVDWGKTAVEMAL 143
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|873224219|emb|CEM26950.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 194.897 bits (494), Expect = 6.644e-58 Identity = 90/148 (60.81%), Postives = 114/148 (77.03%), Query Frame = 0
Query: 80 LDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAK 227
L+GS +IGI+KTRWN +IVD+L +GV+ L E V EN+ + VPGS+ELPLA RFLALS Q D +++IG LIKG+T+HFEYIAE+V+ GLM++QLQT P +FGVLT L QA RS G +NHGISWGKTAVEM++LR AL +
Sbjct: 77 LNGSDVKIGIIKTRWNKDIVDNLVKGVKEGLTECSVPAENILEIEVPGSYELPLATRFLALSNQVDAIVSIGVLIKGDTLHFEYIAESVSNGLMNVQLQTMTPTVFGVLTCLNLNQAKERSSGPDNHGISWGKTAVEMSVLRRYALGR 224
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|551573024|ref|XP_005772319.1| (hypothetical protein EMIHUDRAFT_444779 [Emiliania huxleyi CCMP1516] >gi|551604111|ref|XP_005783542.1| hypothetical protein EMIHUDRAFT_434395 [Emiliania huxleyi CCMP1516] >gi|485623758|gb|EOD19890.1| hypothetical protein EMIHUDRAFT_444779 [Emiliania huxleyi CCMP1516] >gi|485636526|gb|EOD31113.1| hypothetical protein EMIHUDRAFT_434395 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 191.43 bits (485), Expect = 2.369e-57 Identity = 91/181 (50.28%), Postives = 128/181 (70.72%), Query Frame = 0
Query: 76 FGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAKGPNRATLPLTEKLEDTPEE-KKQSKQFGF 255
FGD LDGST RIGI+K RW+PE+ DSL G + AL GVK+EN+ +T VPGS+ELPLAAR++ALS D ++ +G LIKG+T HFE I+++V+ GLM + +QT +P++FGVLT ++EEQA RS G NHG WG+ AVEMALLR +A+ ++ + + ED + + +++ GF
Sbjct: 39 FGD-LDGSTARIGIIKARWHPEMSDSLIAGAKEALAACGVKEENIVETEVPGSYELPLAARYMALSGSVDAILPVGILIKGDTYHFEAISDSVSSGLMSVGMQTGVPILFGVLTCMSEEQARVRSIGPGNHGPDWGRAAVEMALLRQSAVGGPKSKFFMGFGDSGEDDAKPMTRPAERIGF 218
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|551648624|ref|XP_005827094.1| (hypothetical protein GUITHDRAFT_154245 [Guillardia theta CCMP2712] >gi|428171195|gb|EKX40114.1| hypothetical protein GUITHDRAFT_154245 [Guillardia theta CCMP2712]) HSP 1 Score: 172.17 bits (435), Expect = 9.100e-50 Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 0
Query: 80 LDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARSKGENNHGISWGKTAVEMALLRNAALAKGPNRAT 233
LDG R+GIV TRWN E+V+ L +G RA L E V+D NV + VPGS+ELPLA R++A +++ D +I IG L+KGET H++ I +A T LM + L+T IPV+ G+L T EQA AR+ G+NNHG+ WGKTA+EMA LR + KGP A+
Sbjct: 68 LDGKGMRVGIVSTRWNAEVVNKLKDGARAGLKECQVEDSNVVEFEVPGSWELPLACRYMAQTQKVDAIIAIGVLVKGETDHYDMIKDAATDALMMLGLETGIPVLNGILGCHTMEQAEARATGDNNHGVWWGKTAIEMATLRATQMGKGPIAAS 221
BLAST of EWM28253.1 vs. NCBI_GenBank
Match: gi|397629939|gb|EJK69564.1| (hypothetical protein THAOC_09164 [Thalassiosira oceanica]) HSP 1 Score: 169.859 bits (429), Expect = 3.019e-49 Identity = 82/163 (50.31%), Postives = 112/163 (68.71%), Query Frame = 0
Query: 68 MMSKDLVGFGDDLDGSTCRIGIVKTRWNPEIVDSLYEGVRAALNETGVKDENVYDTTVPGSFELPLAARFLALSRQCDVVITIGCLIKGETMHFEYIAEAVTKGLMDIQLQTTIPVIFGVLTVLTEEQAVARS---KGENNHGISWGKTAVEMALLRNAALAK 227
M ++ V F +LDGS RIG+++TRWN E V +L +G++A E V+ +N++ VPG++ELP AAR LA+S D ++ G LIKGET+HFEYI++AV+ G+MD+ L T PV++GVL L EEQ + RS G +NHG WGKTAVEMAL+R A K
Sbjct: 1 MAAESEVSF-SELDGSGVRIGVLRTRWNDEHVSNLVDGIKAGCAECKVEPDNIFVKEVPGAYELPYAARLLAMSGTVDAIVCCGVLIKGETLHFEYISDAVSAGIMDVSLGTMTPVVYGVLNCLDEEQVMKRSSNLNGGHNHGEDWGKTAVEMALMRKEAFGK 162 The following BLAST results are available for this feature:
BLAST of EWM28253.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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