EWM28323.1, cds2347 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28323.1 vs. NCBI_GenBank
Match: gi|585110672|gb|EWM28323.1| (indole-3-glycerol-phosphate synthase [Nannochloropsis gaditana]) HSP 1 Score: 858.596 bits (2217), Expect = 0.000e+0 Identity = 418/418 (100.00%), Postives = 418/418 (100.00%), Query Frame = 0
Query: 1 MASTGMVCRPQMRQAGRQQVGRRWLGWIFICLAAGPSTTAFVNFISGPPALSADATGAWQPSHTHPYRNKPRLFTGTDGGTSASLSSSDLPSSLGETQLGPSGNAMTDTLARKAKEKEIAAFKAALPRAHPIFTMLEDLSFPPSLANRSDALYQNLRHRHGNTLTVVAEYWRKAPFAFLGSVLEPKEYSEIYREAGASAIAVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQISRAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAVGAGARVVYLYGCSRAQAVEMRQDLDQDGVMIGFDLRRPREFQYGLNEVEDAWILRDAGFHSVYVSNLLFQTPLDDVLGPSSVIKALRAKACVFLVDPLDWIEKSVMEGSKETLGELLA 418
MASTGMVCRPQMRQAGRQQVGRRWLGWIFICLAAGPSTTAFVNFISGPPALSADATGAWQPSHTHPYRNKPRLFTGTDGGTSASLSSSDLPSSLGETQLGPSGNAMTDTLARKAKEKEIAAFKAALPRAHPIFTMLEDLSFPPSLANRSDALYQNLRHRHGNTLTVVAEYWRKAPFAFLGSVLEPKEYSEIYREAGASAIAVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQISRAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAVGAGARVVYLYGCSRAQAVEMRQDLDQDGVMIGFDLRRPREFQYGLNEVEDAWILRDAGFHSVYVSNLLFQTPLDDVLGPSSVIKALRAKACVFLVDPLDWIEKSVMEGSKETLGELLA
Sbjct: 1 MASTGMVCRPQMRQAGRQQVGRRWLGWIFICLAAGPSTTAFVNFISGPPALSADATGAWQPSHTHPYRNKPRLFTGTDGGTSASLSSSDLPSSLGETQLGPSGNAMTDTLARKAKEKEIAAFKAALPRAHPIFTMLEDLSFPPSLANRSDALYQNLRHRHGNTLTVVAEYWRKAPFAFLGSVLEPKEYSEIYREAGASAIAVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQISRAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAVGAGARVVYLYGCSRAQAVEMRQDLDQDGVMIGFDLRRPREFQYGLNEVEDAWILRDAGFHSVYVSNLLFQTPLDDVLGPSSVIKALRAKACVFLVDPLDWIEKSVMEGSKETLGELLA 418
BLAST of EWM28323.1 vs. NCBI_GenBank
Match: gi|397608190|gb|EJK59930.1| (hypothetical protein THAOC_19796, partial [Thalassiosira oceanica]) HSP 1 Score: 155.606 bits (392), Expect = 7.255e-40 Identity = 105/321 (32.71%), Postives = 170/321 (52.96%), Query Frame = 0
Query: 110 LARKAKEKEIAAFKAALPRAHPIFTMLEDLSFPPSLANRSDAL--YQNLRHRHGNTLTVVAEYWRKAPFA-FLGSVLEPKEYSEIYREAGASAIAVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQISRAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAVGAGARVVYLYGCSRAQAVEMRQDLDQDGVMIGFDLRRPREF----------QYGLNEVEDAWILRDAGFHSVYVSNLLFQTPLDDVLGPSSVIKALRAKACVFLVDPLDWIEKSVMEGSKETLGELL 417
RKAKE ++ + P + + + + + + DA Q++ + T++VVAEY RK + F+ +L+P+ S ++RE GA+A+AV D GGC ++D+ MV EQ+ A DV P+P+++ D++VD +QI++A+ AGA +T+ +S+ PE I+ A AL ME +V V EA AV AGA +V + G A + V+ G + R L EVE+AWI RD GF+ V++S+ L++ D V P ++I +++AK+ V P K EG++E LG++L
Sbjct: 60 FVRKAKEADVRKYCEDGP-SESVLGLYKQIKAYDGSGDDGDASGELQSILTKRKGTISVVAEYKRKLEGSGFVTDILQPEILSPVFREFGAAAVAVLADERMGGCTYDDVKAMVEEQEEA-RGDVPGPLPVISSDLIVDEIQIAQARDAGAVAVTVTYSVVGPEKVEQFIKDARALNMEVIVNVATPEEAQGAVDAGASMVAVVGVDGADG--------KFAVIEGLSVPEGRRVCTIANILAKDNKALEEVEEAWICRDMGFNCVWISDALYKAGNDPVEHPGAIISSVKAKSSVKFASPKARSGKG--EGAREYLGDIL 368
BLAST of EWM28323.1 vs. NCBI_GenBank
Match: gi|224008492|ref|XP_002293205.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971331|gb|EED89666.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 143.28 bits (360), Expect = 2.710e-35 Identity = 106/315 (33.65%), Postives = 170/315 (53.97%), Query Frame = 0
Query: 110 LARKAKEKEIAAFKAALPRAHPIFTMLEDLSFPPSLANRSDAL----YQNLRHRHGNTLTVVAEYWRKAPFA-FLGSVLEPKEYSEIYREAGASAIAVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQISRAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAVGAGARVVYLYGCSRA-QAVEMRQDLD-QDGVMIGFDLRRPREFQYGLNEVEDAWILRDAGFHSVYVSNLLFQTPLDDVLGPSSVIKALRAKACVFLVDPLDWIEKSVMEGSKETLGELL 417
RKAKE ++ + P + + +L+ ++ P A Q L + T++++AEY RK + FL +L P+ S ++RE GA+A+AV D GGC ++DI EMV EQQ A+ E V P+P+++ D++VD +QI+RA AGA +T+ + E I+ A LG+E +V V + EA +AV GA ++ + G A + + L +G + + L EVE+AWI RD GF+ V+VS+ L+++ D V P ++I ++RAK+ V P K EG++E LG++L
Sbjct: 57 FVRKAKEADVRKYCEEGP-SESVLALLKQINDAPDEAADDATTTVGEVQGLLTKRKGTISIIAEYKRKLEGSGFLSEILPPEILSPVFREFGATAVAVLADERTGGCTYDDIVEMVEEQQEAMGE-VPGPLPVISSDLIVDEIQIARAADAGAKAVTVTHGVVGEEKVSQFIKNARVLGLETIVNVGTAEEAQSAVDVGASIISVTGVDGADNKFAVIESLSVPEGRTVCTIANILAKDNKALEEVEEAWICRDRGFNCVWVSDALYKSGNDPVEHPGAIISSMRAKSSVKYASPKARSGKG--EGAREYLGDIL 367
BLAST of EWM28323.1 vs. NCBI_GenBank
Match: gi|298705029|emb|CBJ28504.1| (Indole-3-glycerol-phosphate synthase [Ectocarpus siliculosus]) HSP 1 Score: 128.642 bits (322), Expect = 2.048e-30 Identity = 101/312 (32.37%), Postives = 166/312 (53.21%), Query Frame = 0
Query: 110 LARKAKE----KEIAAFKAALPRAHPIFTMLEDLSFPPSLANRSDALYQNLRHRHGNTLTVVAEYWRKAPFAFLGSVLEPKEYSEIYREAGASAIAVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQISRAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAVGA-GARVVYLYGCSRAQAVEMRQDLDQDGVMIGFDLRRPREFQYGLNEVEDAWILRDAGFHSVYVSNLLFQTPLDDVLGPSSVIKALRAKACVFLVDPLDWIEKSVMEGSKETLGEL 416
LARKAKE K++ ++A P + P+F +LE + + ++ ++ TL+VVAEY + F+ +L P+ + R GA+ IAV + + GGC+ D+ +V EQ+ + D P+P++ D+V+ +I+RAK AGAAG+T+ +L PE L + LGME ++ + E AV + ++ + G +AVE+RQ + V + RR E G++E+ED W LRDAG+H+++ S +L++ + +++KA+RAKA V K EG+KE LG L
Sbjct: 7 LARKAKEAQVSKDMEELRSAEPDS-PVFQLLEQAEAGKGAGDGPEYPLSDVLRKNKGTLSVVAEYRKILKSGFIDGILAPELLCPLLRNGGAACIAVATEPLTGGCSDADLKTVVEEQENS-RGDFPGPMPVIIRDLVISEFEIARAKAAGAAGVTVVLALVGPERAAELAAFSKKLGMEAVIQATSQEEIEQAVTSEDISIISIVGKMVDEAVELRQYIPDRVVSVVHVDRRSDE---GMDEIEDCWQLRDAGYHTIWASEVLYKGGMMQAESAEAILKAIRAKASVKYGRARGMSGKG--EGAKEYLGYL 311
BLAST of EWM28323.1 vs. NCBI_GenBank
Match: gi|219117511|ref|XP_002179550.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409441|gb|EEC49373.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 122.479 bits (306), Expect = 1.397e-27 Identity = 100/326 (30.67%), Postives = 167/326 (51.23%), Query Frame = 0
Query: 110 LARKAKEKEIAAFKAALPRAHPI--FTML-EDLSF--PPSLANRSDALYQNLRHRHGNTLTVVAEYWRKAPFAFLGSVLE---PKEYSEIYREAGASAIAVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQISRAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAVGAGARVVYLYGCSRAQAV----------EMRQDLDQDGVMIGFDLRRPREFQYGLNEVEDAWILRDAGFHSVYVSNLLFQTPLDDVLGPSSVIKALRAKACVFLVDPLDWIEKSVMEGSKETLGELL 417
L +KAKE+E+ + + H + + +L E+L+ +LA++ Q R T+TV+AEY RK F G + E P+ S +RE GASAIAV D GGC ++DI V EQ+ A +E V P+P++ D++VD +Q++R+ G A + L E T L++ A+ +E +V V + EA A+ +GAR++ + + + E +Q ++ D + L E+EDAW +RD GF+SV+V L++ D P +IK++++K+ + P + EG++E LG++L
Sbjct: 64 LVKKAKEQELRKYIESGVEEHVMEKYNLLKENLATINDETLADQVVGPLQESLTRRKGTITVIAEYKRKCGFNPTGLIHEMHVPELLSPSFREYGASAIAVMADPRMGGCDYDDIRHFVEEQRRAKME-VPGPLPVINNDLIVDELQVARSAAYGCAALVLNLPTLGVEQTKVLLKATKAVDLEAIVAVSSKEEAQTAIDSGARMLSILHLGTVEDMVAAVDGLVIPEGQQVCKIANILANNDQQ--------LQEIEDAWSVRDQGFNSVWVGEALYKGGADPNEQPGGIIKSMKSKSSLKFASP--KAARGRGEGAREYLGDIL 378
BLAST of EWM28323.1 vs. NCBI_GenBank
Match: gi|1210514275|dbj|GAX27057.1| (hypothetical protein FisN_9Lh379 [Fistulifera solaris]) HSP 1 Score: 117.472 bits (293), Expect = 7.281e-26 Identity = 83/274 (30.29%), Postives = 145/274 (52.92%), Query Frame = 0
Query: 150 DALYQNLRHRHGNTLTVVAEYWRKAPFA---FLGSVLEPKEYSEIYREAGASAIAVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQISRAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAVGAGARVVYLYGCS-RAQAVEMRQDLDQ-DGVMIGFDLRRPREFQYG-LNEVEDAWILRDAGFHSVYVSNLLFQTPLDDVLGPSSVIKALRAKACVFLVDPLDWIEKSVMEGSKETLGELL 417
+ L Q L R G TLT++AEY RK F + + +P+ S I+RE ASAIAV D G C + + V EQ+ A +E V P+ ++ D+++D +QI+R GA + L ++ + L++ A A+ +E +V V ++ +A A+ GAR++ + G S + + Q L +G ++ G L E+EDAW LRD G++S+ V L+++ ++ P +I+++++K+ + P EG++E LG++L
Sbjct: 94 NKLQQELTRRRG-TLTIIAEYNRKTRFTDSGIIKDLYDPEIVSPIFREYLASAIAVTADERMGACDYSTLEAFVKEQKRAHME-VPGPIMVINNDLILDELQIARTVDVGADAVVLSAAVLEKDELEKLLKCAAAVEVEAIVAVTSAEQAQQAIDMGARMISVQGISDNEERAALLQSLKMPEGRIVTTICNLGAAKGKGDLQEIEDAWFLRDKGYNSIIVGETLYKSGSLEIEHPGVIIRSMKSKSSLKFASP--KASNGRGEGAREYLGDIL 363
BLAST of EWM28323.1 vs. NCBI_GenBank
Match: gi|1210517025|dbj|GAX24126.1| (indole-3-glycerol phosphate synthase [Fistulifera solaris]) HSP 1 Score: 116.701 bits (291), Expect = 1.269e-25 Identity = 82/274 (29.93%), Postives = 143/274 (52.19%), Query Frame = 0
Query: 150 DALYQNLRHRHGNTLTVVAEYWRKAPF---AFLGSVLEPKEYSEIYREAGASAIAVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQISRAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAVGAGARVVYLYGC-SRAQAVEMRQDLDQ-DGVMIGFDLRRPREFQYG-LNEVEDAWILRDAGFHSVYVSNLLFQTPLDDVLGPSSVIKALRAKACVFLVDPLDWIEKSVMEGSKETLGELL 417
+ L Q L R G TLT++AEY RK F + + +P+ S I+RE ASAIAV D G C + + V EQ+ A +E V P+ I+ D+++D +QI+R GA + L ++ + L++ A+ +E +V V ++ +A A+ GAR++ + G + + Q L +G ++ G L E+EDAW LRD G++S+ V L+++ ++ P +I+++++K+ + P EG++E LG++L
Sbjct: 92 NKLQQELTRRRG-TLTIIAEYNRKTRFTDSGIIKDLYDPEIVSPIFREYLASAIAVTADERMGACDYSTLEAFVKEQKRAHME-VPGPIMIINNDLILDELQIARTVHVGADAVVLSAAVLEKDELEKLLKCTAAVDLEAIVAVTSAEQAQQAIDMGARMISVQGIGDNEERAALLQSLKMPEGRIVTTICNLGAAKGKGDLQEIEDAWFLRDKGYNSIIVGETLYKSGSLEIEHPGVIIRSMKSKSSLKFASP--KASNGRGEGAREYLGDIL 361
BLAST of EWM28323.1 vs. NCBI_GenBank
Match: gi|545706754|ref|XP_005705693.1| (indole-3-glycerol phosphate synthase [Galdieria sulphuraria] >gi|452822151|gb|EME29173.1| indole-3-glycerol phosphate synthase [Galdieria sulphuraria]) HSP 1 Score: 99.7525 bits (247), Expect = 2.345e-19 Identity = 102/336 (30.36%), Postives = 160/336 (47.62%), Query Frame = 0
Query: 104 NAMTDTLARKAKEKEIAAFKAALPRA-HPIFTMLE-DLSFPPSLANRSDALYQNLRHRHGNTLTVVAEYWRKAPF-AFLGSVLEPKEYSEIYREAGASAIAVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQISRAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAVGAGARVVYL-------YGCSRAQAVEMRQDLDQDGVMIGFDLRRPREFQYGLNEVEDAWILRDAGFHSVYVSNLL-------------FQTPLDDVLGPSSVIKALRAKACVFLVDPLDWIEKSVMEGSKETLGEL 416
+ + L RKA E E K A + +PI + L + SF P D Y L+ + TL+V+AE RK+P +GS+ +P S IY+E GASAI+V D G G +D+ ++ QQ E P PI+ D ++D VQI+ A AGA+ I L S T L+Q ALG+E +V V N E A+ +GA+++ + + S A+++RQ L + V + + G+++ AW+LRD GF+++ V L +Q P++ G +I+A +K+ + EG+KE LG +
Sbjct: 84 DILQSILKRKAVEVEQLKEKLANESSDNPITSRLAMEGSFEPK-----DTFYCALK-KPNFTLSVIAEIKRKSPSKGHIGSIRDPAGLSRIYKEGGASAISVLTDLEGFGGTLDDLRKVYKAQQ-QYRETYPGPAPILRKDFIIDKVQIAEAAEAGASAILLIVSALGKR-TKELLQATYALGLEALVEVHNEDEVDIALQSGAKIIGINNRNLKNFEVSLEHAIKLRQLLPPEIVSVA---------ESGISDPAVAWLLRDEGFNAILVGEALVTAAERSEAVGTYYQKPVNQAYG---LIRAFLSKSSRKYANSATAALWGQGEGAKEFLGSI 399
BLAST of EWM28323.1 vs. NCBI_GenBank
Match: gi|546311577|ref|XP_005714701.1| (indole-3-glycerol phosphate synthase [Chondrus crispus] >gi|507111149|emb|CDF34882.1| indole-3-glycerol phosphate synthase [Chondrus crispus]) HSP 1 Score: 93.2041 bits (230), Expect = 2.237e-17 Identity = 95/323 (29.41%), Postives = 152/323 (47.06%), Query Frame = 0
Query: 115 KEKEIAAFKAALPRA---HPIFTMLEDLSFPPSLANRSDALYQNLRHRHGNTLTVVAEYWRKAPF-AFLGSVLEPKEYSEIYREAGASAIAVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQISRAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAVGAGARVVYL-------YGCSRAQAVEMRQDLDQDGVMIGFDLRRPREFQYGLNEVEDAWILRDAGFHSVYVSNLLFQ----TPLDDV-LGPS-----SVIKALRAKACVFLVDPLDWIEKSVMEGSKETLGEL 416
KE E+A +A + A HP+ +L P R A Y L+ G T+TV+AE R++P +G+V P S +Y EAGA AI+V D G G +D+ ++V E Q+ + P P++ D +D +QI+ A AGA+ + L + E T L+ A G++ +V V + E A+ AGA +V + + S A+ + + + +D V I + G+ + DAW LRD G+++V V L + + D+ PS +I A +AK V ++ E +KE LGE+
Sbjct: 48 KETEVANLRAEVEAAGASHPVAKVLSKKGTLP----RGKAFYSALKLPPG-TITVIAEVKRRSPSKGKIGNVKNPGLLSRVYYEAGAGAISVLTDLEGFGGTLDDLKQVV-ETQSTFKGNYPEPCPVLRKDFTIDEIQIAEAAAAGASAVLLIVAALGKEKTKELLDATHAFGLDALVEVHDEDELKIALDAGAEIVGVNNRDLRTFDVSLDTAMRLAELIPEDVVKIA---------ESGIAQYIDAWRLRDVGYNAVLVGESLIRAYEGSASDNTSYTPSYNQAKGLIMAFKAKGSVEFGRSSNFSFYGKGEAAKEVLGEM 355
BLAST of EWM28323.1 vs. NCBI_GenBank
Match: gi|551540284|ref|XP_005758552.1| (hypothetical protein EMIHUDRAFT_106968 [Emiliania huxleyi CCMP1516] >gi|485606234|gb|EOD06123.1| hypothetical protein EMIHUDRAFT_106968 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 88.9669 bits (219), Expect = 2.788e-16 Identity = 88/283 (31.10%), Postives = 138/283 (48.76%), Query Frame = 0
Query: 136 LEDLSFPPSLANRSDALYQNLRHRHGNTLTVVAEYWRKAPFAFLG--SVLEPKEYSEIYREAGASAIAVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQISRAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAVGAGARVVYLYGCSRAQAVEMRQDLDQDGVMIGFDLRRPREFQYGLNEVEDAWILRDAGFHSVYVSNLLFQTPLDDVLGPSSVIKALRAKACVFLVDPLDWIEKSVMEGSKETLGEL 416
LE F P A D L++ ++ G ++ ++ E + A LG + +P SE +R G S ++V G D +E+Q + P+P++A VVD VQ+++A GA+ TL L E T +L++ A G+E V V N+ E A A+ GA+++ + CS QA E+ +L +D I D+R V DA RD GF ++ VS+ L + + D + P +VIKA+ AK V ++K +EG+KE LG L
Sbjct: 33 LEKGDFAPPSAAVKDKLHKAIKKPKG-SMALIGEGSPQLSSATLGGFDLNDPAYLSEQFRIGGCSGVSVRS---GERQLAADALRRTSEEQQVAQGEFPGPLPVLAHLDVVDEVQLAQAAADGASAATLSLQLNGAEGTKALMEAAAGYGLESAVRVANAEEVATALSLGAKLLCIGDCSLPQAGELVAELPKDVRSI-CDVR-----------VRDA---RDLGFDALIVSDALIEVCIRDRVPPDAVIKAMLAKGSVKYG---LGMQKGRLEGAKEQLGSL 293 The following BLAST results are available for this feature:
BLAST of EWM28323.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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