rna2355, rna2355 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2355
Unique Name	rna2355
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	204
Alignment location	CM002459.1:177407..179470 -

Link to JBrowse

Properties


Property Name	Value
Product	indole-3-glycerol-phosphate synthase
Orig transcript id	gnl\|cribi\|Naga_100109g9.6591.mrna
Orig protein id	gnl\|cribi\|Naga_100109g9.6591
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:177407..179470 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100109g9	gene2250	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2355	rna2355-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28323.1	cds2347	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:177407..179470-
coding sequence from alignment at CM002459.1:177407..179470-

mRNA sequence

>rna2355 ID=rna2355|Name=rna2355|organism=Nannochloropsis gaditana|type=mRNA|length=204bp
ATGCGTGTGATGCCAAGTCTACTTGGGCAGCCTTCGATTGCAGGAGTGTC
GCCGAGACAACTTCATGCAGGCAGACGGATTCTGGTGCTGGTGTATGCAC
ATACAAGCCACGTAACTTGGGTTCACCTCCTCCCCTTCAAGCGCTTTGCG
CACGGGCATCGCCTTCCACAAATTCGAGCATTCGAACGAAAAGTGCTTAA
CTAG

protein sequence of rna2355

>rna2355-protein ID=rna2355-protein|Name=rna2355|organism=Nannochloropsis gaditana|type=polypeptide|length=418bp
MASTGMVCRPQMRQAGRQQVGRRWLGWIFICLAAGPSTTAFVNFISGPPA
LSADATGAWQPSHTHPYRNKPRLFTGTDGGTSASLSSSDLPSSLGETQLG
PSGNAMTDTLARKAKEKEIAAFKAALPRAHPIFTMLEDLSFPPSLANRSD
ALYQNLRHRHGNTLTVVAEYWRKAPFAFLGSVLEPKEYSEIYREAGASAI
AVNVDSVGGGCAHEDIAEMVAEQQAAILEDVTAPVPIVAMDVVVDPVQIS
RAKLAGAAGITLRFSLTPPEVTLSLIQTALALGMEPMVFVRNSTEAAAAV
GAGARVVYLYGCSRAQAVEMRQDLDQDGVMIGFDLRRPREFQYGLNEVED
AWILRDAGFHSVYVSNLLFQTPLDDVLGPSSVIKALRAKACVFLVDPLDW
IEKSVMEGSKETLGELLA

mRNA from alignment at CM002459.1:177407..179470-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2355 ID=rna2355|Name=rna2355|organism=Nannochloropsis gaditana|type=mRNA|length=2064bp|location=Sequence derived from alignment at CM002459.1:177407..179470- (Nannochloropsis gaditana)
AATGTTTGAGTTGCTCAATCTCTTTTTCAGTCCAGGGGCCAGAAACGATT
GGGATATCTGCACTCGATGATCGACGACGTACCGCATTGCATCCTCAAGT
GCAACATATTGACTTGACGTGTTCTTTTTTTATTTATCATGGCTTCAACA
GGGATGGTCTGTCGTCCGCAAATGAGACAAGCAGGCAGACAACAAGTTGG
ACGTCGGTGGTTGGGTTGGATTTTTATCTGCCTCGCTGCTGGACCCAGCA
CCACAGCTTTCGTGAATTTTATCTCTGGACCCCCAGCATTATCAGCAGGT
AAAGAATTTGGGATTGTGTTTGACGTGAGGATATCCGGTTCTCTCTTTCG
ATGCATGCGCATCTTTGATACCATGCATAAGTGCACAAGTCCAGAATATC
TGAAGCCTTTCCATTCCATTTCCCCCCCCCGTGTGTCCTGTGACAGACGC
TACGGGCGCCTGGCAACCATCCCACACTCACCCCTACCGAAACAAGCCGC
GCCTATTTACCGGGACCGATGGGGGTACTTCGGCATCCTTATCTTCGAGC
GACCTCCCATCATCTCTGGGTGAAACACAGTTGGGCCCAAGCGGGAATGC
CATGACGGATACTTTGGCGCGAAAAGCCAAAGAAAAAGAAATCGCTGCGT
TCAAAGCAGCCCTTCCCCGTGCCCATCCCATCTTCACCATGCTGGAGGAC
CTCAGCTTCCCTCCGTCCTTGGCCAACCGGAGTGATGCCTTGTACCAAAA
TCTTCGTCACCGTCATGGGAACACTTTAACGGTCGTGGCGGAGTACTGGC
GGAAGGCGCCCTTTGCGTTCCTGGGTTCGGTCTTGGAACCCAAGGAATAC
AGCGAAATCTACCGAGAGGCAGGGGCGAGCGCGATTGCCGTGAACGTGGA
CTCTGTTGGAGGGGGATGTGCACACGAAGACATCGCCGAGATGGTGGCGG
AGCAACAAGCCGCCATCTTGGAGGACGTGACCGCCCCCGTGCCCATCGTC
GCCATGGACGTGGTCGTGGACCCCGTGCAAATTTCGCGGGCAAAGCTGGC
CGGAGCGGCAGGTGAAGAGGAAGGGGGGGGGTTGGGGTGGATGGGAGGGG
GGAAAGGGAGCCTTGGGCGGCTTTCTGCTGTGGGAAGGCGTTTGCGGCCT
GGGAGGAAGGCAGGGTATGGGCCGTGCTAACCTCCCTCAGTCTGCTCTCT
TTCGGGTTGTGCTCATTCTCGCGTCGATTGACCCTGCCTCTCGCCTGTGT
CTCGGTACCGCCCTCCCTCTTTCTTCCTCTCCCTCCCGTCCCACGCAGGC
ATCACCCTCCGCTTCTCCCTCACACCCCCCGAGGTCACCCTGTCCCTGAT
TCAGACCGCCTTGGCGTTAGGCATGGAGCCCATGGTCTTCGTCAGGAATT
CGACCGAAGCAGCGGCGGCGGTAGGGGCGGGGGCCCGCGTCGTCTATCTG
TATGGGTGTTCCCGCGCACAGGCCGTTGAGATGCGCCAGGATTTGGATCA
AGACGGTGTGATGATTGGCTTTGACCTGCGTCGACCCCGCGAATTTCAGT
ACGGGTTGAACGAGGTAGAAGATGCCTGGATCCTCCGGGACGCGGGTTTT
CACAGCGTTTATGTGAGCAATTTGTTGTTCCAAACGCCGTTGGATGATGT
GCTGGGGCCTAGCTCGGTCATCAAGGCTTTGCGTGCCAAAGCCTGCGTTT
TCCTGGTCGACCCCTTGGACTGGATCGAGAAGTCCGTGATGGAAGGCTCG
AAAGAAACCTTGGGGGAGCTCTTGGCGTAGGCCGGAAGGGCCTCTTTCGT
ATTGGGAGGTTTGTGTGTGAGTCTATGTGCTGGGTAGTGGTGGGTGTCTG
GCGGCGATAGTAAAGGCGAACAGGCGTATGGGACGGGTCGAACGAGAAGG
GTCTCCTCCCTTCTTACCGCGTGTACATAAGGAACTGCGAATGGGTAGCT
GGAGACCTTTGACGCTCAAGTTCTGGTAAAATATAAATGACTGCTTTTAT
AGTTTTTCCTTCTCAAAAGTGCTACAGACCGGTCAGGTCACAACCAAGCA
TGGCTTCATTTAAA

Coding sequence (CDS) from alignment at CM002459.1:177407..179470-

>rna2355 ID=rna2355|Name=rna2355|organism=Nannochloropsis gaditana|type=CDS|length=3771bp|location=Sequence derived from alignment at CM002459.1:177407..179470- (Nannochloropsis gaditana)
GCATCACCCTCCGCTTCTCCCTCACACCCCCCGAGGTCACCCTGTCCCTG
ATTCAGACCGCCTTGGCGTTAGGCATGGAGCCCATGGTCTTCGTCAGGAA
TTCGACCGAAGCAGCGGCGGCGGTAGGGGCGGGGGCCCGCGTCGTCTATC
TGTATGGGTGTTCCCGCGCACAGGCCGTTGAGATGCGCCAGGATTTGGAT
CAAGACGGTGTGATGATTGGCTTTGACCTGCGTCGACCCCGCGAATTTCA
GTACGGGTTGAACGAGGTAGAAGATGCCTGGATCCTCCGGGACGCGGGTT
TTCACAGCGTTTATGTGAGCAATTTGTTGTTCCAAACGCCGTTGGATGAT
GTGCTGGGGCCTAGCTCGGTCATCAAGGCTTTGCGTGCCAAAGCCTGCGT
TTTCCTGGTCGACCCCTTGGACTGGATCGAGAAGTCCGTGATGGAAGGCT
CGAAAGAAACCTTGGGGGAGCTCTTGGCGTAGACGCTACGGGCGCCTGGC
AACCATCCCACACTCACCCCTACCGAAACAAGCCGCGCCTATTTACCGGG
ACCGATGGGGGTACTTCGGCATCCTTATCTTCGAGCGACCTCCCATCATC
TCTGGGTGAAACACAGTTGGGCCCAAGCGGGAATGCCATGACGGATACTT
TGGCGCGAAAAGCCAAAGAAAAAGAAATCGCTGCGTTCAAAGCAGCCCTT
CCCCGTGCCCATCCCATCTTCACCATGCTGGAGGACCTCAGCTTCCCTCC
GTCCTTGGCCAACCGGAGTGATGCCTTGTACCAAAATCTTCGTCACCGTC
ATGGGAACACTTTAACGGTCGTGGCGGAGTACTGGCGGAAGGCGCCCTTT
GCGTTCCTGGGTTCGGTCTTGGAACCCAAGGAATACAGCGAAATCTACCG
AGAGGCAGGGGCGAGCGCGATTGCCGTGAACGTGGACTCTGTTGGAGGGG
GATGTGCACACGAAGACATCGCCGAGATGGTGGCGGAGCAACAAGCCGCC
ATCTTGGAGGACGTGACCGCCCCCGTGCCCATCGTCGCCATGGACGTGGT
CGTGGACCCCGTGCAAATTTCGCGGGCAAAGCTGGCCGGAGCGGCAGATG
GCTTCAACAGGGATGGTCTGTCGTCCGCAAATGAGACAAGCAGGCAGACA
ACAAGTTGGACGTCGGTGGTTGGGTTGGATTTTTATCTGCCTCGCTGCTG
GACCCAGCACCACAGCTTTCGTGAATTTTATCTCTGGACCCCCAGCATTA
TCAGCAGGCATCACCCTCCGCTTCTCCCTCACACCCCCCGAGGTCACCCT
GTCCCTGATTCAGACCGCCTTGGCGTTAGGCATGGAGCCCATGGTCTTCG
TCAGGAATTCGACCGAAGCAGCGGCGGCGGTAGGGGCGGGGGCCCGCGTC
GTCTATCTGTATGGGTGTTCCCGCGCACAGGCCGTTGAGATGCGCCAGGA
TTTGGATCAAGACGGTGTGATGATTGGCTTTGACCTGCGTCGACCCCGCG
AATTTCAGTACGGGTTGAACGAGGTAGAAGATGCCTGGATCCTCCGGGAC
GCGGGTTTTCACAGCGTTTATGTGAGCAATTTGTTGTTCCAAACGCCGTT
GGATGATGTGCTGGGGCCTAGCTCGGTCATCAAGGCTTTGCGTGCCAAAG
CCTGCGTTTTCCTGGTCGACCCCTTGGACTGGATCGAGAAGTCCGTGATG
GAAGGCTCGAAAGAAACCTTGGGGGAGCTCTTGGCGTAGACGCTACGGGC
GCCTGGCAACCATCCCACACTCACCCCTACCGAAACAAGCCGCGCCTATT
TACCGGGACCGATGGGGGTACTTCGGCATCCTTATCTTCGAGCGACCTCC
CATCATCTCTGGGTGAAACACAGTTGGGCCCAAGCGGGAATGCCATGACG
GATACTTTGGCGCGAAAAGCCAAAGAAAAAGAAATCGCTGCGTTCAAAGC
AGCCCTTCCCCGTGCCCATCCCATCTTCACCATGCTGGAGGACCTCAGCT
TCCCTCCGTCCTTGGCCAACCGGAGTGATGCCTTGTACCAAAATCTTCGT
CACCGTCATGGGAACACTTTAACGGTCGTGGCGGAGTACTGGCGGAAGGC
GCCCTTTGCGTTCCTGGGTTCGGTCTTGGAACCCAAGGAATACAGCGAAA
TCTACCGAGAGGCAGGGGCGAGCGCGATTGCCGTGAACGTGGACTCTGTT
GGAGGGGGATGTGCACACGAAGACATCGCCGAGATGGTGGCGGAGCAACA
AGCCGCCATCTTGGAGGACGTGACCGCCCCCGTGCCCATCGTCGCCATGG
ACGTGGTCGTGGACCCCGTGCAAATTTCGCGGGCAAAGCTGGCCGGAGCG
GCAGATGGCTTCAACAGGGATGGTCTGTCGTCCGCAAATGAGACAAGCAG
GCAGACAACAAGTTGGACGTCGGTGGTTGGGTTGGATTTTTATCTGCCTC
GCTGCTGGACCCAGCACCACAGCTTTCGTGAATTTTATCTCTGGACCCCC
AGCATTATCAGCAGGCATCACCCTCCGCTTCTCCCTCACACCCCCCGAGG
TCACCCTGTCCCTGATTCAGACCGCCTTGGCGTTAGGCATGGAGCCCATG
GTCTTCGTCAGGAATTCGACCGAAGCAGCGGCGGCGGTAGGGGCGGGGGC
CCGCGTCGTCTATCTGTATGGGTGTTCCCGCGCACAGGCCGTTGAGATGC
GCCAGGATTTGGATCAAGACGGTGTGATGATTGGCTTTGACCTGCGTCGA
CCCCGCGAATTTCAGTACGGGTTGAACGAGGTAGAAGATGCCTGGATCCT
CCGGGACGCGGGTTTTCACAGCGTTTATGTGAGCAATTTGTTGTTCCAAA
CGCCGTTGGATGATGTGCTGGGGCCTAGCTCGGTCATCAAGGCTTTGCGT
GCCAAAGCCTGCGTTTTCCTGGTCGACCCCTTGGACTGGATCGAGAAGTC
CGTGATGGAAGGCTCGAAAGAAACCTTGGGGGAGCTCTTGGCGTAGACGC
TACGGGCGCCTGGCAACCATCCCACACTCACCCCTACCGAAACAAGCCGC
GCCTATTTACCGGGACCGATGGGGGTACTTCGGCATCCTTATCTTCGAGC
GACCTCCCATCATCTCTGGGTGAAACACAGTTGGGCCCAAGCGGGAATGC
CATGACGGATACTTTGGCGCGAAAAGCCAAAGAAAAAGAAATCGCTGCGT
TCAAAGCAGCCCTTCCCCGTGCCCATCCCATCTTCACCATGCTGGAGGAC
CTCAGCTTCCCTCCGTCCTTGGCCAACCGGAGTGATGCCTTGTACCAAAA
TCTTCGTCACCGTCATGGGAACACTTTAACGGTCGTGGCGGAGTACTGGC
GGAAGGCGCCCTTTGCGTTCCTGGGTTCGGTCTTGGAACCCAAGGAATAC
AGCGAAATCTACCGAGAGGCAGGGGCGAGCGCGATTGCCGTGAACGTGGA
CTCTGTTGGAGGGGGATGTGCACACGAAGACATCGCCGAGATGGTGGCGG
AGCAACAAGCCGCCATCTTGGAGGACGTGACCGCCCCCGTGCCCATCGTC
GCCATGGACGTGGTCGTGGACCCCGTGCAAATTTCGCGGGCAAAGCTGGC
CGGAGCGGCAGATGGCTTCAACAGGGATGGTCTGTCGTCCGCAAATGAGA
CAAGCAGGCAGACAACAAGTTGGACGTCGGTGGTTGGGTTGGATTTTTAT
CTGCCTCGCTGCTGGACCCAGCACCACAGCTTTCGTGAATTTTATCTCTG
GACCCCCAGCATTATCAGCAG

Synonyms

Publications