rna2347, rna2347 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2347
Unique Name	rna2347
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3459
Alignment location	CM002459.1:162710..164089 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100109g17.6589.mrna
Orig protein id	gnl\|cribi\|Naga_100109g17.6589
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:162710..164089 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100109g17	gene2243	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28321.1	cds2339	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2347	rna2347-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:162710..164089-
coding sequence from alignment at CM002459.1:162710..164089-

mRNA sequence

>rna2347 ID=rna2347|Name=rna2347|organism=Nannochloropsis gaditana|type=mRNA|length=3459bp
CTGAGCCCTTTCCCCGAACGAACAGAGTTATTGCCAAAAGTACTTCGCCT
CCATACATCGGTTGTACGTCTCTTAGACTTATCTACCAAAGTTCACACAG
TCGCCTGCCGTAGTAGATGCAGCACAGGCCTGTTGAACTCTTGACAACGT
GCTCTTTTCGCTCCCGCCCCTCGTGTTCGCACGGGGCGCCTCCTGTTCTT
GGACCTCTCTCTTCGTCGCGGTGCAAGAACAACGCCTCCCCTGAGCACGA
CGGATCGTCTAGGTTTCTTGGTCAGAAGACTGACGAAGCAAAGGCAATTT
TGTCATCCCACAACATGGAAGATGACGTAATCAAGATGAGCGGGGTTGGC
TCAAGGCGGCACTCTCAAGACATTCCTGGAGGTTTACCCGCCCTGAGAGC
CGATCGAACAGCGGAGCAGCTCGCAGAAAACAACAAGATGCCAACCAGCA
TTGCCATTCACATGATACAAAGGGAAAATAGTCCTTGTACTGGAGAAAAC
AAAGAGGACGTCATGGATACCAAGGTGGCGGTAAACCAGGCACGGACCGA
GGACCTTCAAGTGACCTCCCCGTCCGTCATCGCCGCGTGCATGCGTCGAT
TTCGGAAGCAACCTCCCATGTCGCGACAAGAGAGAGACGAGTACCGACAG
CAGCAGGAACGTCTGGCGGCAAAGAGCCGCGCAGCGGATAATGAGCTTTT
GGGAACAAAGGAGGAAGATTTTTGGTGGATACGACCGCCTCAGGCGGCCT
CTGTGTGTCGAGGTCTGAGGGAGGTCGAATCTTCCCGGCATGGTTTCTAT
GTCTCTGAGAAGATTGAAGGTCGATCCAGCGTACAGACGACGGAAGTGCA
GGATTTGGAAAAGGAGGCGGACGTCCTCCTGAGGCGGAGTCAGGAATTGC
TTGGGAGTACCCCTTCCTTTTCCTCCTCCTCCTCCTCCTCTCCCCCGCTG
TCGGCGACAGCCCTGGTAATGGAAGACGACCTGGTCCTCCCCTCCTGGCA
AAGCAACGCAGGAGAGGCGGGCTACCCGGACTGCGGAAGACAAGGTGTCG
AGGCCTCGGCGCGGGGAGGGGAAGGAGCGATCGCCCAAATCGATCCGTCG
ACCTCCGTCGGCCTTGCAGCCCAAGACGACCTGTTGGTGGAGCACGGTCA
AGCCTCGTCCCCTCCCGCCTTGCCCTTCGTTTCCCGGAACGTCGGCGGGC
GGCCTCTGTCCCCGCCCCTCGTCTCCCCCCTTCCCGCCTCCACCCCCCGA
GTCCAGGAAGGGGAAGTCGTCCGGCCGCCCTCCCCTCTCCCGCCAACCCT
CTCCATCTCCATACACAGCATCGAGGCGATCCAGGAGGAGACGTTGCCCA
CCTTTTATCGGCAGCAAGTCCAGGCGATGGACGCGTTGGAACGTCGGCGG
GCTCTGCGACGAGCCTGGCGGTCACGGGCGCCCCTGGCCGGTGCCGGAGG
CGCCGCGGTTGGCCCGGGGATGAGGTTACAGCCACAGGGAACCAGGAGCG
GACCGATGGAAAGGACGGAGCAGACCTTGTGGCTTGCTTCGGCGTCCGCC
CCCTCCGCCACCGTCTGCCAGCCAGCCTTGGGCAAAGACCTTACTTCTCA
CCGCCCTGGTTGGGCATGCGGGGGTGGCCGGGGTTGCTGCGACAACAAGG
AGGGCTGCGACATTCTCGTGACCTCCCTCCCCATGTCCTACTCTCCTCCC
TCGTCCTCCCCCCCCCCCCTCTTCCCATCCTTCTCCTCTGGGTGGCGCGA
TCGACTGCCAGGTTCGATCCACCTCGCTTCCTATCCAGCCCACTCATCTT
GCCTCCCCGCCTCCCATCGACAGCATCTGCCCAACGAAGCCATGAGGCTT
GTCAAGCATTTGGCAGGAGAAGTTGTGCACACCCGCCTGTTTGCCAGTCC
CCATCCCCTCTTGTCCCCTCAGGCGGACCCGCCACATGTGGTAGGGCAGC
GTGTGCGGGGGGCACTCAGGGAAATGGAGACGGACGGCGGGGACGAAGAG
AAGAAAAAAGGGACAGACATGACCGAAGACGAGGGTGGGCAAGAGGAGAA
GGACGAAGGAGCCAGCAATAGGGGCGGGAAGCAGGATAATTTCTACAGGC
ACACGGCGCCGTCCTCGTCCGAAAGTGTGGACAGCTTAGCCTTGGAAGAG
GAAGGGGAAGCAAGCCTATGGTGGGATGTAGAAGACGAAGCAACGTGCGG
GGAGGGCATGGGGGAGGAGGTTTCCGAGTACAGGGACGACGCGATTGTGC
AGGCCTTGGTGGCAAGGCGACGGGAACTCCTGCTCGAGTTATCGTTGGGA
GAAAGGGGCCGGCTGGCATGACACACTGGTTTAGAATGCAGCATAGCGAT
GGTAGTGTAAGAAAAAACTATAGTTATTGAGAACACGGGGAGGAAGAACA
ATGGGTTGTGCGGAGCTTTCGGAAAAACACAGGTTGCTGCCTTCTTTTAG
TCTGTGTGATACCTGTCAACGAGAAGCTGCTGTATGTCGGTACCCAAAGG
GCAGAGCATTCGCCCAAACCGAAAAGGTCAGCGACCGCTTCAGCCATGGC
GCCATTCTTTTCCTCTTGGTTCAAAGCAGCGGAGGTATTCGACCCAAACT
GTCCAAACCAGACCCCTGATTCCGGTTTGGCCGAATCCATGTCTGCATTT
ATCACGCGCCAACCTTGGGGTACGTGCTCGGCAAACCACTTTGGAAGGTC
GGCTGTGTCCGACGGCACGAACACGCTGACCTCGCTTGAATCTTTCCTTT
CCGCCGCCCAAGCCTTCATTGCTTCTAACGTTTGAGTTTTTATTATCGAT
TCGTTTACTTGCCTCCAAGTTTTGGCTTCCCAATCCCCTTTCTCGTTGTT
TCCGATCCTAAAGTGCGCACATAGATGAAGAGGCTTGTACTGCTTCCGAC
GCGGATCCATGACACGCAATACTCGTTGCGAAAGCGAAGCTGAAAGCTTA
GAAACCACAGCCCACATTTCTTTTGACTCGAACATTCGCACCATGTCACC
GGGTATATAAAAATCACGCGTTGTACCCGTCTTTTCGACTGCCCCCGGGC
TTTCTGCTGCAGGAGACCAATTTTTGGGGAAACTGTTGGCAAAGTGTTCT
TCAGCCTGATGACCAGCTTTCACCATGTCCGAGTCGACAAAAATTGCATC
CCAGGGAACATCAGTCCATACTGCATGCGCGAATCGTTTTTGACCCTGCG
CATAGACCAATGTGGGTAGATTTCGCGATAGCCGATGTCCTATTCCGCAA
CACGCTCCAAAAGAAACCGGGTGCTCATCAGAAACCGCACTGCGCTGAGG
AATGACCTCATCATCTTTCAAATTTCCATCTGTTACTTGGTTCAGAGCTT
GCCTCACGACCGGATGTTGTGCATTTCCTTCGAATGGAAATCGGATGGGA
TATAAGACTTGATACCCCATGTAAAGGTTTAGACCGACAAAAGAAGCACT
AGCCATTGC

protein sequence of rna2347

>rna2347-protein ID=rna2347-protein|Name=rna2347|organism=Nannochloropsis gaditana|type=polypeptide|length=372bp
MTKLSRERRHVAAWLAMASASFVGLNLYMGYQVLYPIRFPFEGNAQHPVV
RQALNQVTDGNLKDDEVIPQRSAVSDEHPVSFGACCGIGHRLSRNLPTLV
YAQGQKRFAHAVWTDVPWDAIFVDSDMVKAGHQAEEHFANSFPKNWSPAA
ESPGAVEKTGTTRDFYIPGDMVRMFESKEMWAVVSKLSASLSQRVLRVMD
PRRKQYKPLHLCAHFRIGNNEKGDWEAKTWRQVNESIIKTQTLEAMKAWA
AERKDSSEVSVFVPSDTADLPKWFAEHVPQGWRVINADMDSAKPESGVWF
GQFGSNTSAALNQEEKNGAMAEAVADLFGLGECSALWVPTYSSFSLTGIT
QTKRRQQPVFFRKLREEGFEEL

mRNA from alignment at CM002459.1:162710..164089-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2347 ID=rna2347|Name=rna2347|organism=Nannochloropsis gaditana|type=mRNA|length=1380bp|location=Sequence derived from alignment at CM002459.1:162710..164089- (Nannochloropsis gaditana)
CGTGAAACCGGTGCTGAAAGATTACAAATGATTAATTATACATCTATGTC
TTCCCAATTTAGCAGGATACTTGTATCAGATGACAAAGCTGAGTCGGGAA
AGGAGGCATGTGGCAGCATGGTTGGCAATGGCTAGTGCTTCTTTTGTCGG
TCTAAACCTTTACATGGGGTATCAAGTCTTATATCCCATCCGATTTCCAT
TCGAAGGAAATGCACAACATCCGGTCGTGAGGCAAGCTCTGAACCAAGTA
ACAGATGGAAATTTGAAAGATGATGAGGTCATTCCTCAGCGCAGTGCGGT
TTCTGATGAGCACCCGGTTTCTTTTGGAGCGTGTTGCGGAATAGGACATC
GGCTATCGCGAAATCTACCCACATTGGTCTATGCGCAGGGTCAAAAACGA
TTCGCGCATGCAGTATGGACTGATGTTCCCTGGGATGCAATTTTTGTCGA
CTCGGACATGGTGAAAGCTGGTCATCAGGCTGAAGAACACTTTGCCAACA
GTTTCCCCAAAAATTGGTCTCCTGCAGCAGAAAGCCCGGGGGCAGTCGAA
AAGACGGGTACAACGCGTGATTTTTATATACCCGGTGACATGGTGCGAAT
GTTCGAGTCAAAAGAAATGTGGGCTGTGGTTTCTAAGCTTTCAGCTTCGC
TTTCGCAACGAGTATTGCGTGTCATGGATCCGCGTCGGAAGCAGTACAAG
CCTCTTCATCTATGTGCGCACTTTAGGATCGGAAACAACGAGAAAGGGGA
TTGGGAAGCCAAAACTTGGAGGCAAGTAAACGAATCGATAATAAAAACTC
AAACGTTAGAAGCAATGAAGGCTTGGGCGGCGGAAAGGAAAGATTCAAGC
GAGGTCAGCGTGTTCGTGCCGTCGGACACAGCCGACCTTCCAAAGTGGTT
TGCCGAGCACGTACCCCAAGGTTGGCGCGTGATAAATGCAGACATGGATT
CGGCCAAACCGGAATCAGGGGTCTGGTTTGGACAGTTTGGGTCGAATACC
TCCGCTGCTTTGAACCAAGAGGAAAAGAATGGCGCCATGGCTGAAGCGGT
CGCTGACCTTTTCGGTTTGGGCGAATGCTCTGCCCTTTGGGTACCGACAT
ACAGCAGCTTCTCGTTGACAGGTATCACACAGACTAAAAGAAGGCAGCAA
CCTGTGTTTTTCCGAAAGCTGAGGGAGGAAGGATTCGAAGAGTTGTGAGT
GAAGTCAGTGCTGGCAAGAGAAGCATTCGATAGGAACTACTAACTAACTA
ATTTAACCACAGCTACATGAAGCTGCCTTAAATTTTTCGTGCGAATGATT
CTATGAGTCGCTGAAATCAACTGCCTGTGCGAAATGCGCAGTCTGAATTC
TTACAAAAGCCTCAAGCCAATCCGTGAACA

Coding sequence (CDS) from alignment at CM002459.1:162710..164089-

>rna2347 ID=rna2347|Name=rna2347|organism=Nannochloropsis gaditana|type=CDS|length=1119bp|location=Sequence derived from alignment at CM002459.1:162710..164089- (Nannochloropsis gaditana)
ATGACAAAGCTGAGTCGGGAAAGGAGGCATGTGGCAGCATGGTTGGCAAT
GGCTAGTGCTTCTTTTGTCGGTCTAAACCTTTACATGGGGTATCAAGTCT
TATATCCCATCCGATTTCCATTCGAAGGAAATGCACAACATCCGGTCGTG
AGGCAAGCTCTGAACCAAGTAACAGATGGAAATTTGAAAGATGATGAGGT
CATTCCTCAGCGCAGTGCGGTTTCTGATGAGCACCCGGTTTCTTTTGGAG
CGTGTTGCGGAATAGGACATCGGCTATCGCGAAATCTACCCACATTGGTC
TATGCGCAGGGTCAAAAACGATTCGCGCATGCAGTATGGACTGATGTTCC
CTGGGATGCAATTTTTGTCGACTCGGACATGGTGAAAGCTGGTCATCAGG
CTGAAGAACACTTTGCCAACAGTTTCCCCAAAAATTGGTCTCCTGCAGCA
GAAAGCCCGGGGGCAGTCGAAAAGACGGGTACAACGCGTGATTTTTATAT
ACCCGGTGACATGGTGCGAATGTTCGAGTCAAAAGAAATGTGGGCTGTGG
TTTCTAAGCTTTCAGCTTCGCTTTCGCAACGAGTATTGCGTGTCATGGAT
CCGCGTCGGAAGCAGTACAAGCCTCTTCATCTATGTGCGCACTTTAGGAT
CGGAAACAACGAGAAAGGGGATTGGGAAGCCAAAACTTGGAGGCAAGTAA
ACGAATCGATAATAAAAACTCAAACGTTAGAAGCAATGAAGGCTTGGGCG
GCGGAAAGGAAAGATTCAAGCGAGGTCAGCGTGTTCGTGCCGTCGGACAC
AGCCGACCTTCCAAAGTGGTTTGCCGAGCACGTACCCCAAGGTTGGCGCG
TGATAAATGCAGACATGGATTCGGCCAAACCGGAATCAGGGGTCTGGTTT
GGACAGTTTGGGTCGAATACCTCCGCTGCTTTGAACCAAGAGGAAAAGAA
TGGCGCCATGGCTGAAGCGGTCGCTGACCTTTTCGGTTTGGGCGAATGCT
CTGCCCTTTGGGTACCGACATACAGCAGCTTCTCGTTGACAGGTATCACA
CAGACTAAAAGAAGGCAGCAACCTGTGTTTTTCCGAAAGCTGAGGGAGGA
AGGATTCGAAGAGTTGTGA

Synonyms

Publications