EWM28321.1, cds2339 (CDS) Nannochloropsis gaditana

Overview
NameEWM28321.1
Unique Namecds2339
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:162892..164010 -

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Properties
Property NameValue
Protein idEWM28321.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100109g17.6589.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:162892..164010 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28321.1 vs. NCBI_GenBank
Match: gi|585110670|gb|EWM28321.1| (hypothetical protein Naga_100109g17 [Nannochloropsis gaditana])

HSP 1 Score: 777.704 bits (2007), Expect = 0.000e+0
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0
Query:    1 MTKLSRERRHVAAWLAMASASFVGLNLYMGYQVLYPIRFPFEGNAQHPVVRQALNQVTDGNLKDDEVIPQRSAVSDEHPVSFGACCGIGHRLSRNLPTLVYAQGQKRFAHAVWTDVPWDAIFVDSDMVKAGHQAEEHFANSFPKNWSPAAESPGAVEKTGTTRDFYIPGDMVRMFESKEMWAVVSKLSASLSQRVLRVMDPRRKQYKPLHLCAHFRIGNNEKGDWEAKTWRQVNESIIKTQTLEAMKAWAAERKDSSEVSVFVPSDTADLPKWFAEHVPQGWRVINADMDSAKPESGVWFGQFGSNTSAALNQEEKNGAMAEAVADLFGLGECSALWVPTYSSFSLTGITQTKRRQQPVFFRKLREEGFEEL 372
            MTKLSRERRHVAAWLAMASASFVGLNLYMGYQVLYPIRFPFEGNAQHPVVRQALNQVTDGNLKDDEVIPQRSAVSDEHPVSFGACCGIGHRLSRNLPTLVYAQGQKRFAHAVWTDVPWDAIFVDSDMVKAGHQAEEHFANSFPKNWSPAAESPGAVEKTGTTRDFYIPGDMVRMFESKEMWAVVSKLSASLSQRVLRVMDPRRKQYKPLHLCAHFRIGNNEKGDWEAKTWRQVNESIIKTQTLEAMKAWAAERKDSSEVSVFVPSDTADLPKWFAEHVPQGWRVINADMDSAKPESGVWFGQFGSNTSAALNQEEKNGAMAEAVADLFGLGECSALWVPTYSSFSLTGITQTKRRQQPVFFRKLREEGFEEL
Sbjct:    1 MTKLSRERRHVAAWLAMASASFVGLNLYMGYQVLYPIRFPFEGNAQHPVVRQALNQVTDGNLKDDEVIPQRSAVSDEHPVSFGACCGIGHRLSRNLPTLVYAQGQKRFAHAVWTDVPWDAIFVDSDMVKAGHQAEEHFANSFPKNWSPAAESPGAVEKTGTTRDFYIPGDMVRMFESKEMWAVVSKLSASLSQRVLRVMDPRRKQYKPLHLCAHFRIGNNEKGDWEAKTWRQVNESIIKTQTLEAMKAWAAERKDSSEVSVFVPSDTADLPKWFAEHVPQGWRVINADMDSAKPESGVWFGQFGSNTSAALNQEEKNGAMAEAVADLFGLGECSALWVPTYSSFSLTGITQTKRRQQPVFFRKLREEGFEEL 372          
BLAST of EWM28321.1 vs. NCBI_GenBank
Match: gi|397635672|gb|EJK71960.1| (hypothetical protein THAOC_06552 [Thalassiosira oceanica])

HSP 1 Score: 255.758 bits (652), Expect = 4.767e-78
Identity = 138/310 (44.52%), Postives = 184/310 (59.35%), Query Frame = 0
Query:   68 IPQRSAVSDEHPVSFGACCGIGHRLSRNLPTLVYAQGQKRFAHAVWTDVPWDAIFVDSDMVKAGHQAEEHFANSFPKNWSPAAESPGA--VE----KTGTTRDFYIPGDMVRMFESKEMWAVVSKLSASLSQRVLRVMDPRRKQYK--PLHLCAHFRIGNNEKGDWEAKTWRQVNESIIKTQTLEAMKAWAAERKDSSEVSVFVPSDTADLPKWFAEHVPQGWRVINADMDSAKPESGVWFGQFGSNTSAALNQEEKNGAMAEAVADLFGLGECSALWVPTYSSFSLTGITQTKRRQQPVFFRKLREEGF 369
            +P    +    P+SFG CCGIGHRL RNLP +VY   ++    A W DV WD +F D+D V AG +  E+F N  P++WS   E+P A  VE    + GT  + Y   D   +FE    W+VV+ L  +LS  VL  +DP R+QY+   LH+C H R GNNE GDWE K WR ++   I   TL AM+  A     +++V+VFV SD+     WF  HVP+GW V+       +PE GVWFG+  S T+A L+Q+E++ AMAEAVAD+F LGEC AL++P +SSFS  GI  T+     VFF  L+   F
Sbjct:   78 MPLPPPLESNPPISFGGCCGIGHRLGRNLPAIVYGVTRRARLVAAWDDVKWDVLFNDNDFVVAGKRQAENFDNGVPEDWS---ENPMAWRVETGPMREGTPYERY-GQDSRYLFEMGLAWSVVNMLRKNLSPLVLSFLDPMREQYRDSELHVCTHIRQGNNETGDWERKKWRHIDFETIANATLAAMRHHAVV-SGATKVTVFVASDSGKTRPWFESHVPEGWSVVRPGRVLPRPERGVWFGEAMSPTNAVLSQKERDEAMAEAVADVFALGECDALYLPNFSSFSQVGIMLTRAEGNRVFFMDLKRHDF 382          
BLAST of EWM28321.1 vs. NCBI_GenBank
Match: gi|397646831|gb|EJK77445.1| (hypothetical protein THAOC_00725, partial [Thalassiosira oceanica])

HSP 1 Score: 207.223 bits (526), Expect = 1.051e-57
Identity = 125/305 (40.98%), Postives = 159/305 (52.13%), Query Frame = 0
Query:   68 IPQRSAVSDEHPVSFGACCGIGHRLSRNLPTLVYAQGQKR-FAHAVWTDVPWDAIFVDSDMVKAGHQAEEHFANSFPKNWSPAAESPGAVEKTGTTRDFYIPGDMVRMFESKEMWAVVSKLSASLSQRVLRVMDPRRKQYK--PLHLCAHFRIGNNEKGDWEAKTWRQVNESIIKTQTLEAMKAWAAERKDSSEVSVFVPSDTADLPKWFAEHVPQGWRVINADMDSAKPESGVWFGQFGSNTSAALNQEEKNGAMAEAVADLFGLGECSALWVPTYSSFSLTGITQTKRRQQPVFFRKLREEGF 369
            +P   A+     VS G CCGIGHRL  NLP +V+    +R    A W D       V  +  K G   E                        GT  D Y   D   +FE    W+VV+ L  +LS  V   +DP R+QY+   LH+C H R GNNE GDWE K WR ++   +   TL AM+  A E   +++V+VFV SD+     WF  HVP+GW ++       KPESGVWFG+ GS TSA L+Q+E++ AMAEAVAD+F LGEC AL+VP YSSFS  GI  T+     V F  L    F
Sbjct:  277 MPPPRALESNGLVSSGGCCGIGHRLGLNLPAIVHGGITRRTLLVAAWNDP------VGVEGGKTGPMRE------------------------GTPYDRYGQ-DSRYLFEMGLAWSVVNMLRDNLSPLVRSFLDPMREQYRDSELHVCTHIRQGNNETGDWERKKWRHIDFGTVANATLAAMRRHA-EASGATKVTVFVASDSDSARPWFEAHVPEGWELVRPGRVLPKPESGVWFGESGSTTSAVLSQKERDDAMAEAVADVFALGECDALYVPNYSSFSQVGIMLTRGEGNRVLFMDLTRHDF 549          
The following BLAST results are available for this feature:
BLAST of EWM28321.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585110670|gb|EWM28321.1|0.000e+0100.00hypothetical protein Naga_100109g17 [Nannochlorops... [more]
gi|397635672|gb|EJK71960.1|4.767e-7844.52hypothetical protein THAOC_06552 [Thalassiosira oc... [more]
gi|397646831|gb|EJK77445.1|1.051e-5740.98hypothetical protein THAOC_00725, partial [Thalass... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2347rna2347Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications