rna2334, rna2334 (mRNA) Nannochloropsis gaditana

Overview
Namerna2334
Unique Namerna2334
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length516
Alignment locationCM002459.1:132763..133762 +

Link to JBrowse

Properties
Property NameValue
Productmitochondrial import receptor subunit
Orig transcript idgnl|cribi|Naga_100846g6.7645.mrna
Orig protein idgnl|cribi|Naga_100846g6.7645
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:132763..133762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100846g6gene2229Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2334rna2334-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28347.1cds2326Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2334 ID=rna2334|Name=rna2334|organism=Nannochloropsis gaditana|type=mRNA|length=516bp
ATGTCGCCTCCTTTGACATTGGCCTTATCATCGTCGCCATTGAAGAAAAT
GAACGTCAAAAGCCTCCTTTTTTCTCTCCTGCTTGCCACCACGACGGCCT
TACTTGGACTCATGTATTTCCGGCCCGCCCTCCGCTTCAATCTCCTTCCA
CCCTCTCCTCCTGAGAAAAAAGACGAGGAGCGCTCGGCAAAGGAGCAAAA
TGACACGAAGGGAGTAGAAGCAACGGCCGAGGGGCGCGACGTGGACATTA
AGGGCGTGGAGGAGAGAGAGTACGAGGAGTGGGGGGCCAAGGCCGTAGAT
GCCTTCAAAGCCGGCGAGTACACAGATGCTCTGCAAGGATTCAACCAGGC
CCTTGAGCTCGGGGGGAGCATGGCTGGCGTCAGCAATCAGCAAAACACAC
TCCTTTCCAACAGGAGTGCTTGCTACGAACGACGAAGTTCGGTCCCCGCT
TTCATGGAATCTCAGGATCAAATGTCCATTTTAAAAGTCAAAATCGTCGG
CTCGCATCTCCTCTGA
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protein sequence of rna2334

>rna2334-protein ID=rna2334-protein|Name=rna2334|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MQGKVEEAGKELEKSIRLDPSNPMPHINKALVAWQGEDAVTARETLQHVI
EMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEEL
AQIKVLAMAKLDGAKRLGLTAGDLMG
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mRNA from alignment at CM002459.1:132763..133762+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2334 ID=rna2334|Name=rna2334|organism=Nannochloropsis gaditana|type=mRNA|length=1000bp|location=Sequence derived from alignment at CM002459.1:132763..133762+ (Nannochloropsis gaditana)
tccctcctcttctcagGCCAAGCGCGCAGCACCTCGGAACGCGGACGTCG
TCGCCGCCTACGCCGAGTTTCTGCTCATGCAAGGAAAAGTGGAAGAGGCC
GGGAAAGAGCTGGAAAAGAGCATTCGTCTCGATCCTTCCAACCCCATGCC
GCACATCAACAAGgtatgccctccctccctcaaagGCCCACCCCCCAGTC
CGATTCTTCCTTACTCTCCCCctgccatccctcccgccctccttcccaca
atccctcccgccctccttcatgcCCGCAGGCGCTCGTGGCAtggcaaggg
gaggatgcggtGACGGCACGAGAAACCCTCCAGCACGTGATAGAAATGGA
CCCGCAGTACCAGCCCGCCTACTCCTTCCTAGCAAATTTGTTGTTCAAAG
GTGTGAGTACTGTGGAAGACAGCAAACCTGCCTTTGAGATCATCGACAAG
GGTGAGTCggcaggggaggtaggggggacagggagacaagggaggggcat
ggcGTCACCGCATTGAAGGCGTAGGCCTTGAGtgactggaaggaggaagc
gaagggtGAAGGTAGCaaatgaagagagggaaaggggtcaaccaaggggg
aggagcacggaCGGAAACAGGGagtgagagagagaaagagtcCTGCGTCG
TcatatttttcttcctcatcctcccatttttcttctcatCACCTTctgtc
ttcctttcttcctgaTCCATTAGGGATGCAAATTTGCCGTACAAAAGATG
ATCTGGAAGAACTTGCGCAGATTAAGGTGTTGGCAATGGCGAAATTGGAT
GGCGCGAAACGATTGGGGTTGACGGCGGGTGATTTAatggggtagggagg
gagggaaagagaaaggaggggaagaggcactgagggaggtcggggtgggt
ggggagacTGCTGTCGCTTTCTGAGGGGGTGGCAGCGAGGGACGCGCAAT
GGCGAGACACGAAGTAAATGAACCAAAGCAGAAGTGTGATGGTACCGACG
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Coding sequence (CDS) from alignment at CM002459.1:132763..133762+

>rna2334 ID=rna2334|Name=rna2334|organism=Nannochloropsis gaditana|type=CDS|length=1143bp|location=Sequence derived from alignment at CM002459.1:132763..133762+ (Nannochloropsis gaditana)
ATGCAAGGAAAAGTGGAAGAGGCCGGGAAAGAGCTGGAAAAGAGCATTCG
TCTCGATCCTTCCAACCCCATGCCGCACATCAACAAGGCGCTCGTGGCAt
ggcaaggggaggatgcggtGACGGCACGAGAAACCCTCCAGCACGTGATA
GAAATGGACCCGCAGTACCAGCCCGCCTACTCCTTCCTAGCAAATTTGTT
GTTCAAAGGTGTGAGTACTGTGGAAGACAGCAAACCTGCCTTTGAGATCA
TCGACAAGGGGATGCAAATTTGCCGTACAAAAGATGATCTGGAAGAACTT
GCGCAGATTAAGGTGTTGGCAATGGCGAAATTGGATGGCGCGAAACGATT
GGGGTTGACGGCGGGTGATTTAatggggtagATGCAAGGAAAAGTGGAAG
AGGCCGGGAAAGAGCTGGAAAAGAGCATTCGTCTCGATCCTTCCAACCCC
ATGCCGCACATCAACAAGGCGCTCGTGGCAtggcaaggggaggatgcggt
GACGGCACGAGAAACCCTCCAGCACGTGATAGAAATGGACCCGCAGTACC
AGCCCGCCTACTCCTTCCTAGCAAATTTGTTGTTCAAAGGTGTGAGTACT
GTGGAAGACAGCAAACCTGCCTTTGAGATCATCGACAAGGGGATGCAAAT
TTGCCGTACAAAAGATGATCTGGAAGAACTTGCGCAGATTAAGGTGTTGG
CAATGGCGAAATTGGATGGCGCGAAACGATTGGGGTTGACGGCGGGTGAT
TTAatggggtagATGCAAGGAAAAGTGGAAGAGGCCGGGAAAGAGCTGGA
AAAGAGCATTCGTCTCGATCCTTCCAACCCCATGCCGCACATCAACAAGG
CGCTCGTGGCAtggcaaggggaggatgcggtGACGGCACGAGAAACCCTC
CAGCACGTGATAGAAATGGACCCGCAGTACCAGCCCGCCTACTCCTTCCT
AGCAAATTTGTTGTTCAAAGGTGTGAGTACTGTGGAAGACAGCAAACCTG
CCTTTGAGATCATCGACAAGGGGATGCAAATTTGCCGTACAAAAGATGAT
CTGGAAGAACTTGCGCAGATTAAGGTGTTGGCAATGGCGAAATTGGATGG
CGCGAAACGATTGGGGTTGACGGCGGGTGATTTAatggggtag
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Synonyms
Publications