EWM28347.1, cds2326 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28347.1 vs. NCBI_GenBank
Match: gi|585110701|gb|EWM28347.1| (mitochondrial import receptor subunit [Nannochloropsis gaditana]) HSP 1 Score: 259.996 bits (663), Expect = 6.587e-88 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 Query: 1 MQGKVEEAGKELEKSIRLDPSNPMPHINKALVAWQGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRLGLTAGDLMG 126 MQGKVEEAGKELEKSIRLDPSNPMPHINKALVAWQGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRLGLTAGDLMG Sbjct: 1 MQGKVEEAGKELEKSIRLDPSNPMPHINKALVAWQGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRLGLTAGDLMG 126
BLAST of EWM28347.1 vs. NCBI_GenBank
Match: gi|1210515599|dbj|GAX25492.1| (hypothetical protein FisN_12Lh031 [Fistulifera solaris]) HSP 1 Score: 78.1814 bits (191), Expect = 2.165e-14 Identity = 39/129 (30.23%), Postives = 71/129 (55.04%), Query Frame = 0 Query: 3 GKVEEAGKELEKSIRLDPSNPMPHINKALVAW-------QGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRLGLTAGDL 124 G + A +E +K+ RLDPSNP P++N A+ Q DA E L+ I DPQ+ PAY L L + ++ ++ ++ D ++ CR ++++EL ++ LA+A+++ A++L + +L Sbjct: 488 GDMAAAKEEFDKACRLDPSNPTPYVNAAMAVLNTPPPPGQTPDAALVMELLEKAISADPQFAPAYIQLGQLKLGTAANLDAARKVIDLYDDALKNCRAPEEIKELCSMRTLAVAQVEAAEQLHMETFNL 616
BLAST of EWM28347.1 vs. NCBI_GenBank
Match: gi|1210520953|dbj|GAX20186.1| (hypothetical protein FisN_12Hh031 [Fistulifera solaris]) HSP 1 Score: 78.1814 bits (191), Expect = 2.504e-14 Identity = 39/129 (30.23%), Postives = 71/129 (55.04%), Query Frame = 0 Query: 3 GKVEEAGKELEKSIRLDPSNPMPHINKALVAW-------QGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRLGLTAGDL 124 G + A +E +K+ RLDPSNP P++N A+ Q DA E L+ I DPQ+ PAY L L + ++ ++ ++ D ++ CR ++++EL ++ LA+A+++ A++L + +L Sbjct: 488 GDMAAAKEEFDKACRLDPSNPTPYVNAAMAVLNTPPPPGQTPDATLVMELLEKAISADPQFAPAYIQLGQLKLGTAANLDAARKVIDLYDDALKNCRAPEEIKELCSMRTLAVAQVEAAEQLHMETFNL 616
BLAST of EWM28347.1 vs. NCBI_GenBank
Match: gi|1072236175|gb|OEU20903.1| (TPR-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 76.6406 bits (187), Expect = 4.717e-14 Identity = 40/121 (33.06%), Postives = 69/121 (57.02%), Query Frame = 0 Query: 2 QGKVEEAGKELEKSIRLDPSNPMPHINKALVAW--------QGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGA 114 Q + +A ++ EK+++L+P NP P++N AL Q E A A L+ IE+DPQ+Q AY L L + ++ ++ ++ D G+ CRTK+++ +L +K+L A++DGA Sbjct: 223 QNEFGKAKEQFEKAMKLEPKNPTPYVNTALAVLNTPPEPGMQLEMATEACNLLEKAIEVDPQFQTAYVQLGQLKLGMATDLDTARQVVDLYDSGLNTCRTKEEMTDLMGMKLLTQAQVDGA 343
BLAST of EWM28347.1 vs. NCBI_GenBank
Match: gi|219122591|ref|XP_002181625.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406901|gb|EEC46839.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 73.559 bits (179), Expect = 8.836e-13 Identity = 35/130 (26.92%), Postives = 73/130 (56.15%), Query Frame = 0 Query: 2 QGKVEEAGKELEKSIRLDPSNPMPHINKALVAWQGE-------DAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRLGLTAGDL 124 QG+ ++A + EK+I LDP+NP P++N A+ Q DA L+ I +DP + AY+ L N+ + + ++ + D+ + CR++++++EL +++LA+A+++ A L + + ++ Sbjct: 510 QGEFDQARAQFEKAIALDPTNPTPYVNAAMAILQTPPPPGQMPDAQEVIRLLEEAIRVDPSFTLAYTHLGNVKLGTATELSSAREVVTLYDQALANCRSEEEIKELCSMRILAVAQVEAASMLKMESFNM 639
BLAST of EWM28347.1 vs. NCBI_GenBank
Match: gi|397570028|gb|EJK47112.1| (hypothetical protein THAOC_34193 [Thalassiosira oceanica]) HSP 1 Score: 69.3218 bits (168), Expect = 2.883e-11 Identity = 38/123 (30.89%), Postives = 64/123 (52.03%), Query Frame = 0 Query: 2 QGKVEEAGKELEKSIRLDPSNPMPHINKALVAW-------QGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRL 117 QG V+EA K+I D NP P++N++L+ Q D TA L+ IE DP + AY L + + + +K E+ DKG+ CRT ++L ++ +++L +A+++ A L Sbjct: 879 QGDVQEAKSYFLKAIACDAYNPTPYVNQSLLIMNTPPAPGQMPDFATAISLLETAIEKDPMFHTAYVQLGQMKLSMATDLTKAKEVVELYDKGLTYCRTPEELLDICSMRILTVAQIEAAHSL 1001 The following BLAST results are available for this feature:
BLAST of EWM28347.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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