EWM28347.1, cds2326 (CDS) Nannochloropsis gaditana

Overview
NameEWM28347.1
Unique Namecds2326
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:132839..132925 +
Alignment locationCM002459.1:133042..133213 +
Alignment locationCM002459.1:133486..133607 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28347.1
Productmitochondrial import receptor subunit
Orig transcript idgnl|cribi|Naga_100846g6.7645.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:132839..132925 +
CM002459.1supercontigCM002459.1:133042..133213 +
CM002459.1supercontigCM002459.1:133486..133607 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
Homology
BLAST of EWM28347.1 vs. NCBI_GenBank
Match: gi|585110701|gb|EWM28347.1| (mitochondrial import receptor subunit [Nannochloropsis gaditana])

HSP 1 Score: 259.996 bits (663), Expect = 6.587e-88
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
Query:    1 MQGKVEEAGKELEKSIRLDPSNPMPHINKALVAWQGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRLGLTAGDLMG 126
            MQGKVEEAGKELEKSIRLDPSNPMPHINKALVAWQGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRLGLTAGDLMG
Sbjct:    1 MQGKVEEAGKELEKSIRLDPSNPMPHINKALVAWQGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRLGLTAGDLMG 126          
BLAST of EWM28347.1 vs. NCBI_GenBank
Match: gi|1210515599|dbj|GAX25492.1| (hypothetical protein FisN_12Lh031 [Fistulifera solaris])

HSP 1 Score: 78.1814 bits (191), Expect = 2.165e-14
Identity = 39/129 (30.23%), Postives = 71/129 (55.04%), Query Frame = 0
Query:    3 GKVEEAGKELEKSIRLDPSNPMPHINKALVAW-------QGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRLGLTAGDL 124
            G +  A +E +K+ RLDPSNP P++N A+          Q  DA    E L+  I  DPQ+ PAY  L  L     + ++ ++   ++ D  ++ CR  ++++EL  ++ LA+A+++ A++L +   +L
Sbjct:  488 GDMAAAKEEFDKACRLDPSNPTPYVNAAMAVLNTPPPPGQTPDAALVMELLEKAISADPQFAPAYIQLGQLKLGTAANLDAARKVIDLYDDALKNCRAPEEIKELCSMRTLAVAQVEAAEQLHMETFNL 616          
BLAST of EWM28347.1 vs. NCBI_GenBank
Match: gi|1210520953|dbj|GAX20186.1| (hypothetical protein FisN_12Hh031 [Fistulifera solaris])

HSP 1 Score: 78.1814 bits (191), Expect = 2.504e-14
Identity = 39/129 (30.23%), Postives = 71/129 (55.04%), Query Frame = 0
Query:    3 GKVEEAGKELEKSIRLDPSNPMPHINKALVAW-------QGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRLGLTAGDL 124
            G +  A +E +K+ RLDPSNP P++N A+          Q  DA    E L+  I  DPQ+ PAY  L  L     + ++ ++   ++ D  ++ CR  ++++EL  ++ LA+A+++ A++L +   +L
Sbjct:  488 GDMAAAKEEFDKACRLDPSNPTPYVNAAMAVLNTPPPPGQTPDATLVMELLEKAISADPQFAPAYIQLGQLKLGTAANLDAARKVIDLYDDALKNCRAPEEIKELCSMRTLAVAQVEAAEQLHMETFNL 616          
BLAST of EWM28347.1 vs. NCBI_GenBank
Match: gi|1072236175|gb|OEU20903.1| (TPR-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 76.6406 bits (187), Expect = 4.717e-14
Identity = 40/121 (33.06%), Postives = 69/121 (57.02%), Query Frame = 0
Query:    2 QGKVEEAGKELEKSIRLDPSNPMPHINKALVAW--------QGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGA 114
            Q +  +A ++ EK+++L+P NP P++N AL           Q E A  A   L+  IE+DPQ+Q AY  L  L     + ++ ++   ++ D G+  CRTK+++ +L  +K+L  A++DGA
Sbjct:  223 QNEFGKAKEQFEKAMKLEPKNPTPYVNTALAVLNTPPEPGMQLEMATEACNLLEKAIEVDPQFQTAYVQLGQLKLGMATDLDTARQVVDLYDSGLNTCRTKEEMTDLMGMKLLTQAQVDGA 343          
BLAST of EWM28347.1 vs. NCBI_GenBank
Match: gi|219122591|ref|XP_002181625.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406901|gb|EEC46839.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 73.559 bits (179), Expect = 8.836e-13
Identity = 35/130 (26.92%), Postives = 73/130 (56.15%), Query Frame = 0
Query:    2 QGKVEEAGKELEKSIRLDPSNPMPHINKALVAWQGE-------DAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRLGLTAGDL 124
            QG+ ++A  + EK+I LDP+NP P++N A+   Q         DA      L+  I +DP +  AY+ L N+     + +  ++    + D+ +  CR++++++EL  +++LA+A+++ A  L + + ++
Sbjct:  510 QGEFDQARAQFEKAIALDPTNPTPYVNAAMAILQTPPPPGQMPDAQEVIRLLEEAIRVDPSFTLAYTHLGNVKLGTATELSSAREVVTLYDQALANCRSEEEIKELCSMRILAVAQVEAASMLKMESFNM 639          
BLAST of EWM28347.1 vs. NCBI_GenBank
Match: gi|397570028|gb|EJK47112.1| (hypothetical protein THAOC_34193 [Thalassiosira oceanica])

HSP 1 Score: 69.3218 bits (168), Expect = 2.883e-11
Identity = 38/123 (30.89%), Postives = 64/123 (52.03%), Query Frame = 0
Query:    2 QGKVEEAGKELEKSIRLDPSNPMPHINKALVAW-------QGEDAVTARETLQHVIEMDPQYQPAYSFLANLLFKGVSTVEDSKPAFEIIDKGMQICRTKDDLEELAQIKVLAMAKLDGAKRL 117
            QG V+EA     K+I  D  NP P++N++L+         Q  D  TA   L+  IE DP +  AY  L  +     + +  +K   E+ DKG+  CRT ++L ++  +++L +A+++ A  L
Sbjct:  879 QGDVQEAKSYFLKAIACDAYNPTPYVNQSLLIMNTPPAPGQMPDFATAISLLETAIEKDPMFHTAYVQLGQMKLSMATDLTKAKEVVELYDKGLTYCRTPEELLDICSMRILTVAQIEAAHSL 1001          
The following BLAST results are available for this feature:
BLAST of EWM28347.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585110701|gb|EWM28347.1|6.587e-88100.00mitochondrial import receptor subunit [Nannochloro... [more]
gi|1210515599|dbj|GAX25492.1|2.165e-1430.23hypothetical protein FisN_12Lh031 [Fistulifera sol... [more]
gi|1210520953|dbj|GAX20186.1|2.504e-1430.23hypothetical protein FisN_12Hh031 [Fistulifera sol... [more]
gi|1072236175|gb|OEU20903.1|4.717e-1433.06TPR-like protein [Fragilariopsis cylindrus CCMP110... [more]
gi|219122591|ref|XP_002181625.1|8.836e-1326.92predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397570028|gb|EJK47112.1|2.883e-1130.89hypothetical protein THAOC_34193 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2334rna2334Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications