EWM28348.1, cds2325 (CDS) Nannochloropsis gaditana

Overview
NameEWM28348.1
Unique Namecds2325
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:130298..130507 +
Alignment locationCM002459.1:130727..130807 +
Alignment locationCM002459.1:131084..131223 +
Alignment locationCM002459.1:131414..131498 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28348.1
Productmitochondrial precursor protein import receptor
Orig transcript idgnl|cribi|Naga_101564g2.2637.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:130298..130507 +
CM002459.1supercontigCM002459.1:130727..130807 +
CM002459.1supercontigCM002459.1:131084..131223 +
CM002459.1supercontigCM002459.1:131414..131498 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Homology
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BLAST of EWM28348.1 vs. NCBI_GenBank
Match: gi|585110704|gb|EWM28348.1| (mitochondrial precursor protein import receptor [Nannochloropsis gaditana])

HSP 1 Score: 350.132 bits (897), Expect = 4.359e-122
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 
Query:    1 MSPPLTLALSSSPLKKMNVKSLLFSLLLATTTALLGLMYFRPALRFNLLPPSPPEKKDEERSAKEQNDTKGVEATAEGRDVDIKGVEEREYEEWGAKAVDAFKAGEYTDALQGFNQALELGGSMAGVSNQQNTLLSNRSACYERRSSVPAFMESQDQMSILKVKIVGSHLL 171
            MSPPLTLALSSSPLKKMNVKSLLFSLLLATTTALLGLMYFRPALRFNLLPPSPPEKKDEERSAKEQNDTKGVEATAEGRDVDIKGVEEREYEEWGAKAVDAFKAGEYTDALQGFNQALELGGSMAGVSNQQNTLLSNRSACYERRSSVPAFMESQDQMSILKVKIVGSHLL
Sbjct:    1 MSPPLTLALSSSPLKKMNVKSLLFSLLLATTTALLGLMYFRPALRFNLLPPSPPEKKDEERSAKEQNDTKGVEATAEGRDVDIKGVEEREYEEWGAKAVDAFKAGEYTDALQGFNQALELGGSMAGVSNQQNTLLSNRSACYERRSSVPAFMESQDQMSILKVKIVGSHLL 171
The following BLAST results are available for this feature:
BLAST of EWM28348.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110704|gb|EWM28348.1|4.359e-122100.00mitochondrial precursor protein import receptor [N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2333rna2333Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications