rna2333, rna2333 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2333
Unique Name	rna2333
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2253
Alignment location	CM002459.1:130298..131498 +

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrial precursor protein import receptor
Orig transcript id	gnl\|cribi\|Naga_101564g2.2637.mrna
Orig protein id	gnl\|cribi\|Naga_101564g2.2637
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:130298..131498 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101564g2	gene2228	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2333	rna2333-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28348.1	cds2325	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:130298..131498+
coding sequence from alignment at CM002459.1:130298..131498+

mRNA sequence

>rna2333 ID=rna2333|Name=rna2333|organism=Nannochloropsis gaditana|type=mRNA|length=2253bp
ATGGCATTTTCTTTCAACTTGCACACGTCTCCTGCAGGCCGTGAGGAAAC
AATACGGACTCGGGCATTCGTCGAAACCGGGGCCGCGTTCCACGCTGCGA
ATTCCCTAACGAAAGGATCGGAACGTGGAAGTTCCGTCTCTCCTGGGGAT
GCCACCGTAACCCCCTTTCCGACCCCACGGACCAGGGTGATAATGTGGCA
ATTCATTTCCTCTTTCCACATGTTCAAAAAGAGCGGAGCCTGCGACGACG
AAGCGACTAAGACGTGCTATCCACACCCCTCGCTCGCATCCTCCCTCGAC
CCCACACCCGCGCCAACTTCTTGTCCTCTTCCCTTTCCCTCCGTCCTGCC
TTCGTCCACCGTTTCCTATGTCTCGCCGCTCGCTCCTCCCCCCTTTGATT
CTCCTCCCAAACCCCTTAATTTCTGTTACCTTCCCGACGATTTATGGCGC
GAAATCGCCTCCCACCTCTCCTTGCGGACCCTCCTCCTCTTCTCCCGTCT
ATGCCGCCGTACAGTACACATCCGCCCCCCTTTTCTCGAACGCTGGCTCC
GAGAACGGCACGGTATAGTCCTTCGAGAAGGAGAGAGGGACGGGTTGGAA
AAACGGTCCACCCGGGCCCTGGCCGCCGTGCGCTTTGTGCAAGGAGAGGT
GATCGCCTGTCGAAAAGGCATGCTCAGCGTTGCCCCACCTCCACCTGCGC
TCCTCCCTCCACCACCAGCAATATCTCCTTCCCACCCTCTGTCATTCCCT
CCGGCCCCACCTAACGCGACCAACATCCCTCAAGCCTTCCACACGGACTC
GAATCATCCCCCTGAATCCAGCCTCCCGCACGCCCTCCCCCATTCCCTTC
GTCTCTCTGATCTATTTGGGACCGCATTCAACAGAGGGAGGGAGCTTCAA
AGCGTGGCTGTCACCTGGAAAGGAATGGCCTTCAGGAGTCGGCGCCGCTT
GGCGGGAAGACGGGGGACAGGGGAGGACGGGGAGGAGGAAGGGGTGAAAA
TATTGCCCTGGCGCTCGATTATGGGTGCGTCCCCCATAAAAGATGATACA
ATTCAAAAAATAGATGAACACAAGACCGACGAGAAGTGGCGAACACATGA
GGATGAATGTTGCCAAACGCACGCCAGACCTTACCGGTTCCACTTCCTCC
CTCCCTCCTTCCTCTTTTCCCCGTCACCCCCAGGCTGGATCACCGTCCTG
CCCACCCAGACACGCCCGGGGCAAATCAAGATCGTCTCAACCCTTCCCCC
GGCCTGGAACAAGAGGGGACGGGCGAGAAAAGCGGCCTACATTCTACTCT
CCTTGGACGCACCGCAGTTGCTGCACAGCCGGATGATCACTTTTTGTAAG
AAGAGGGAGGGAGGAAAGGCGGGAGGGAAAGAGGAGAGGGAAAGGATGGT
TGATAAGCGTTGGTCGTGCTGGTGATGGTGGCCAGGGCGTGAGATGATAT
TCACGGTCGTCGTCGAGAGTCGTGCGAGAGGACTGGAGTGGGAAGTGCAT
CTACGTCTGGTTACACAACCCCTTTGAGCACAGGGATGCCATCGAAGTGC
TGTTTGTTCTATTTTTTTTAACCTCGATCGATTGTTCTAAAAGGGTTTTC
ATTGGTTCGCACAGGCGAGGCGCATGCTCGGAGTTATCACACAGACGGCG
ACTCTTGGGTTTTCATGCGGGAAGGTCTGGTGGGAGGGAACCAAAATCAT
GGAGGAAAATAAATTGAAACGTTACGAAGCACAGATACAAAGTAAATACC
ACCGGGCGAAGCAGGAGTACACGGTTCAGGTGAATGGTCGATAAATGAAG
AGTGTTTAGCAAAGCAACGGTCCCTCACCTCTGGCAAATAGACTACGAAA
AGGAGAGGATGGTGTACGCTCAAGGTCTACGAAAACGCGATCCTTTTGCT
CGTCATGGTATAAAGAGTAATATCAGAACAATCACTACGGAAAAGCATGT
ACATCTCAGGAACAAACAAACAGTCCGTCATGGGACGGGAGCGAAGGGGG
GAAAGGGGGGGACGAGGAGGGGTGCGGATGACGTCGAATATCACGAAGAG
AAAGAAAGAAAACTGTGAATCAAGCAAATATTTTAGGCCAGTCAGAGACT
TCACCGTGTGGGATAGATGCTGCATGGTTCATTGAGAGCATGGATAGGGA
AACTAGCACTATGGCCATACATCATACAGCAGCCAAGAAGAAAAGGCACT
GTGAAGTAAGGAAACGTTGGACGAAAAATCAAAGAATCACGCTTCTATAA
AGA

protein sequence of rna2333

>rna2333-protein ID=rna2333-protein|Name=rna2333|organism=Nannochloropsis gaditana|type=polypeptide|length=171bp
MSPPLTLALSSSPLKKMNVKSLLFSLLLATTTALLGLMYFRPALRFNLLP
PSPPEKKDEERSAKEQNDTKGVEATAEGRDVDIKGVEEREYEEWGAKAVD
AFKAGEYTDALQGFNQALELGGSMAGVSNQQNTLLSNRSACYERRSSVPA
FMESQDQMSILKVKIVGSHLL

mRNA from alignment at CM002459.1:130298..131498+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2333 ID=rna2333|Name=rna2333|organism=Nannochloropsis gaditana|type=mRNA|length=1201bp|location=Sequence derived from alignment at CM002459.1:130298..131498+ (Nannochloropsis gaditana)
ATGTCGCCTCCTTTGACATTGGCCTTATCATCGTCGCCATTGAAGAAAAT
GAACGTCAAAagcctccttttttctctcctgCTTGCCACCACGACGGCCT
TACTTGGACTCATGTATTtccggcccgccctccgcttcaatctccttcca
ccctctcctcctgagaaaaaagacgaggagcgcTCGGCAAAGGAGCAAAA
TGACACGAAGGTACGTGCATGGAGTCGTTTGCTGGATAGGTGAGAAGGTC
ATGCTGACGCGACTCGAGTCGTTGGGCGGATGATTGCAGGGGAACGATCA
GACACGCATGAAATGCGTTTTTCATTACGTAAAAATTTCACATCTATCGC
CATGCAGCAGAACTGTCACACTGTACCGCGTCTATCCCACACACTTATCG
TTACACACCTGAATCCTGATGATGCACAGGGAGTAGAAGCAACGGCCGAG
GGGCGCGACGTGGACATtaagggcgtggaggagagagagtaCGAGGAGTG
GGGGGCCAAGGTAGGTaaaaagaggaggtgcgGGACGCAAGAAGACGCGG
CAGGAGGGCAGGCATCGAAAagcaatggaggaggagggaggacggggagt
gAAGGGAGATTAATGATCCCTCAGGAAGGAGGTTCCACTGGGGAAGGCCC
ATGGAGGCCACGGTTTAGAACTTCGACGCATTGCCTTTTTAAAACGACGG
AATAAAACAAGGCGTCGTAGTGTTGACGTTACTgatctcccctcctttcc
cccccttcgacctgcccgggccctcccctctcccaggccgTAGATGCCTT
CAAAGCCGGCGAGTACACAGATGCTCTGCAAGGATTCAACCAGGCCCTTG
AGCTCGGGGGGAGCATGGCTGGCGTCAGCAATCAGCAAAACACACTCCTT
TCCAACAGGAGTGCTTGCTACGAACGGTGCGTGTCGGGGAAAAAGccgct
cctgccctccctccctccctccctccctccttccctgcttccctccttcc
ctccttccctccttccctccttccctccttccctccttctctccttccct
ccttccctccttccctccttccctgctgcccttcttctttctctcttttt
tttcctaaTCCCGTAGACGAAGTTCGGTCCCCGCTTTCATGGAATCTCAG
GATCAAATGTCCATTTTAAAAGTCAAAATCGTCGGCTCGCATCTCCTCTg
a

Coding sequence (CDS) from alignment at CM002459.1:130298..131498+

>rna2333 ID=rna2333|Name=rna2333|organism=Nannochloropsis gaditana|type=CDS|length=2064bp|location=Sequence derived from alignment at CM002459.1:130298..131498+ (Nannochloropsis gaditana)
ATGTCGCCTCCTTTGACATTGGCCTTATCATCGTCGCCATTGAAGAAAAT
GAACGTCAAAagcctccttttttctctcctgCTTGCCACCACGACGGCCT
TACTTGGACTCATGTATTtccggcccgccctccgcttcaatctccttcca
ccctctcctcctgagaaaaaagacgaggagcgcTCGGCAAAGGAGCAAAA
TGACACGAAGGGAGTAGAAGCAACGGCCGAGGGGCGCGACGTGGACATta
agggcgtggaggagagagagtaCGAGGAGTGGGGGGCCAAGgccgTAGAT
GCCTTCAAAGCCGGCGAGTACACAGATGCTCTGCAAGGATTCAACCAGGC
CCTTGAGCTCGGGGGGAGCATGGCTGGCGTCAGCAATCAGCAAAACACAC
TCCTTTCCAACAGGAGTGCTTGCTACGAACGACGAAGTTCGGTCCCCGCT
TTCATGGAATCTCAGGATCAAATGTCCATTTTAAAAGTCAAAATCGTCGG
CTCGCATCTCCTCTgaATGTCGCCTCCTTTGACATTGGCCTTATCATCGT
CGCCATTGAAGAAAATGAACGTCAAAagcctccttttttctctcctgCTT
GCCACCACGACGGCCTTACTTGGACTCATGTATTtccggcccgccctccg
cttcaatctccttccaccctctcctcctgagaaaaaagacgaggagcgcT
CGGCAAAGGAGCAAAATGACACGAAGGGAGTAGAAGCAACGGCCGAGGGG
CGCGACGTGGACATtaagggcgtggaggagagagagtaCGAGGAGTGGGG
GGCCAAGgccgTAGATGCCTTCAAAGCCGGCGAGTACACAGATGCTCTGC
AAGGATTCAACCAGGCCCTTGAGCTCGGGGGGAGCATGGCTGGCGTCAGC
AATCAGCAAAACACACTCCTTTCCAACAGGAGTGCTTGCTACGAACGACG
AAGTTCGGTCCCCGCTTTCATGGAATCTCAGGATCAAATGTCCATTTTAA
AAGTCAAAATCGTCGGCTCGCATCTCCTCTgaATGTCGCCTCCTTTGACA
TTGGCCTTATCATCGTCGCCATTGAAGAAAATGAACGTCAAAagcctcct
tttttctctcctgCTTGCCACCACGACGGCCTTACTTGGACTCATGTATT
tccggcccgccctccgcttcaatctccttccaccctctcctcctgagaaa
aaagacgaggagcgcTCGGCAAAGGAGCAAAATGACACGAAGGGAGTAGA
AGCAACGGCCGAGGGGCGCGACGTGGACATtaagggcgtggaggagagag
agtaCGAGGAGTGGGGGGCCAAGgccgTAGATGCCTTCAAAGCCGGCGAG
TACACAGATGCTCTGCAAGGATTCAACCAGGCCCTTGAGCTCGGGGGGAG
CATGGCTGGCGTCAGCAATCAGCAAAACACACTCCTTTCCAACAGGAGTG
CTTGCTACGAACGACGAAGTTCGGTCCCCGCTTTCATGGAATCTCAGGAT
CAAATGTCCATTTTAAAAGTCAAAATCGTCGGCTCGCATCTCCTCTgaAT
GTCGCCTCCTTTGACATTGGCCTTATCATCGTCGCCATTGAAGAAAATGA
ACGTCAAAagcctccttttttctctcctgCTTGCCACCACGACGGCCTTA
CTTGGACTCATGTATTtccggcccgccctccgcttcaatctccttccacc
ctctcctcctgagaaaaaagacgaggagcgcTCGGCAAAGGAGCAAAATG
ACACGAAGGGAGTAGAAGCAACGGCCGAGGGGCGCGACGTGGACATtaag
ggcgtggaggagagagagtaCGAGGAGTGGGGGGCCAAGgccgTAGATGC
CTTCAAAGCCGGCGAGTACACAGATGCTCTGCAAGGATTCAACCAGGCCC
TTGAGCTCGGGGGGAGCATGGCTGGCGTCAGCAATCAGCAAAACACACTC
CTTTCCAACAGGAGTGCTTGCTACGAACGACGAAGTTCGGTCCCCGCTTT
CATGGAATCTCAGGATCAAATGTCCATTTTAAAAGTCAAAATCGTCGGCT
CGCATCTCCTCTga

Synonyms

Publications