EWM28366.1, cds2307 (CDS) Nannochloropsis gaditana

Overview
NameEWM28366.1
Unique Namecds2307
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:99120..99197 -
Alignment locationCM002459.1:98853..98979 -
Alignment locationCM002459.1:98675..98727 -
Alignment locationCM002459.1:98243..98358 -
Alignment locationCM002459.1:98093..98108 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28366.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101258g1.4088.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:99120..99197 -
CM002459.1supercontigCM002459.1:98853..98979 -
CM002459.1supercontigCM002459.1:98675..98727 -
CM002459.1supercontigCM002459.1:98243..98358 -
CM002459.1supercontigCM002459.1:98093..98108 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM28366.1 vs. NCBI_GenBank
Match: gi|585110733|gb|EWM28366.1| (hypothetical protein Naga_101258g1 [Nannochloropsis gaditana])

HSP 1 Score: 258.07 bits (658), Expect = 5.507e-87
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 
Query:    1 MTAQRIFVPIFLCLASASAFFMAPPRSILKAGEVVSLPDHLFSSSLTEQQAGRSKGVLFSLVINPKRQGITQLGVEEIKARKAALLRTCRGLSWSRGLWRRRCSRSSTTSGCGHASRPLPRMRFRPASG 129
            MTAQRIFVPIFLCLASASAFFMAPPRSILKAGEVVSLPDHLFSSSLTEQQAGRSKGVLFSLVINPKRQGITQLGVEEIKARKAALLRTCRGLSWSRGLWRRRCSRSSTTSGCGHASRPLPRMRFRPASG
Sbjct:    1 MTAQRIFVPIFLCLASASAFFMAPPRSILKAGEVVSLPDHLFSSSLTEQQAGRSKGVLFSLVINPKRQGITQLGVEEIKARKAALLRTCRGLSWSRGLWRRRCSRSSTTSGCGHASRPLPRMRFRPASG 129
The following BLAST results are available for this feature:
BLAST of EWM28366.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110733|gb|EWM28366.1|5.507e-87100.00hypothetical protein Naga_101258g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2315rna2315Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications