EWM28391.1, cds2282 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585110773|gb|EWM28391.1| (abc transmembrane transporter, partial [Nannochloropsis gaditana]) HSP 1 Score: 362.073 bits (928), Expect = 1.747e-126 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 Query: 1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIVRKAGGREGGREGG 183 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIVRKAGGREGGREGG Sbjct: 1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIVRKAGGREGGREGG 183
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585106190|gb|EWM24668.1| (abc subfamily abcg [Nannochloropsis gaditana]) HSP 1 Score: 144.05 bits (362), Expect = 3.951e-37 Identity = 69/164 (42.07%), Postives = 106/164 (64.63%), Query Frame = 0 Query: 1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPS 164 +G+LF+ V LF +++A M++FPL+ A+++REY SG+NAIGPY+ A+ + D P GP + LYW G+ S F F + ++ SMG ++ FS +P IGLT+LP APM+MFSG+LYER+SVP L+W+ + SI+N+ F+ ++ + LP Sbjct: 326 LGLLFSVVVANLFTSSLAVMMRFPLDWAIVVREYFSGSNAIGPYLVARFIVDAPMGYGPFLLITLLYWMTGMDSDIGKFVIFALTFISGNWASTSMGQYVSSFSANPFIGLTILPAFVAPMIMFSGILYERSSVPAWLSWLQTLSIVNYSFSALMIQQIHILPK 489
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585110259|gb|EWM27919.1| (abc subfamily abcg [Nannochloropsis gaditana]) HSP 1 Score: 139.043 bits (349), Expect = 4.828e-35 Identity = 63/172 (36.63%), Postives = 108/172 (62.79%), Query Frame = 0 Query: 1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIVRK 172 MG++F+A V +F + +++FP+E +++RE++SGANA+GPYM A+ +P + GP++ S +YW G+ T+ F + V S S+G ++ FS +P + +T++P PM+MFSGLL ER+SVP LAW+ S++N+ F +++ + LP QG +V++ Sbjct: 431 MGLIFSAVVGNVFTGCLGVVMRFPMEWTLVVREFSSGANAVGPYMIARFFTTLPLSYGPVLMSSIIYWCTGMDPDAGTYLIFVLIFVSFNWSCFSLGQWISSFSANPLVAMTIMPGFVTPMIMFSGLLIERSSVPVWLAWIEDVSVVNYAFDTLMAQQMHILPGNQGEVVQQ 602
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|553189117|ref|XP_005854935.1| (atp-binding cassette [Nannochloropsis gaditana CCMP526] >gi|422294123|gb|EKU21423.1| atp-binding cassette [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 139.043 bits (349), Expect = 5.076e-35 Identity = 63/172 (36.63%), Postives = 108/172 (62.79%), Query Frame = 0 Query: 1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIVRK 172 MG++F+A V +F + +++FP+E +++RE++SGANA+GPYM A+ +P + GP++ S +YW G+ T+ F + V S S+G ++ FS +P + +T++P PM+MFSGLL ER+SVP LAW+ S++N+ F +++ + LP QG +V++ Sbjct: 431 MGLIFSAVVGNVFTGCLGVVMRFPMEWTLVVREFSSGANAVGPYMIARFFTTLPLSYGPVLMSSIIYWCTGMDPDAGTYLIFVLIFVSFNWSCFSLGQWISSFSANPLVAMTIMPGFVTPMIMFSGLLIERSSVPVWLAWIEDVSVVNYAFDTLMAQQMHILPGNQGEVVQQ 602
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585109183|gb|EWM27013.1| (white [Nannochloropsis gaditana]) HSP 1 Score: 132.88 bits (333), Expect = 7.561e-33 Identity = 64/165 (38.79%), Postives = 106/165 (64.24%), Query Frame = 0 Query: 1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSG 165 MGM+FA V +L ++ +KFP+E ++ +REY +GANA+GPY + +ADIP+ ++ + YW +GL +S+++F + + L+ + S G + FS DP +GL + PV+ PM++FSG+LYER+SVP L W+ + S++N+GFA ++ E +L G Sbjct: 414 MGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALFLLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDG 578
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|553193491|ref|XP_005855787.1| (atp-binding cassette subfamily member group wbc protein 2, partial [Nannochloropsis gaditana CCMP526] >gi|422293273|gb|EKU20573.1| atp-binding cassette subfamily member group wbc protein 2, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 122.479 bits (306), Expect = 1.605e-31 Identity = 60/153 (39.22%), Postives = 95/153 (62.09%), Query Frame = 0 Query: 20 MVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIVRK 172 +++ PL+ ++LREY +GANA GPY+ AK L ++P+A GP++ LYW GL S + F F V L Q++ +M + + S +P + L +LP PMV+FSG LY+ A++P LAW+ SI+N+GFA +++L+ LP+ + K Sbjct: 23 ILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALK 175
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585109266|gb|EWM27089.1| (abc subfamily abcg [Nannochloropsis gaditana]) HSP 1 Score: 122.479 bits (306), Expect = 5.243e-29 Identity = 59/145 (40.69%), Postives = 93/145 (64.14%), Query Frame = 0 Query: 20 MVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPS 164 +++ PL+ ++LREY +GANA GPY+ AK L ++P+A GP++ LYW GL S + F F V L Q++ +M + + S +P + L +LP PMV+FSG LY+ A++P LAW+ SI+N+GFA +++L+ LP+ Sbjct: 445 ILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPA 589
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585108726|gb|EWM26638.1| (abc subfamily abcg [Nannochloropsis gaditana]) HSP 1 Score: 119.398 bits (298), Expect = 4.932e-28 Identity = 56/170 (32.94%), Postives = 103/170 (60.59%), Query Frame = 0 Query: 1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIV 170 +G+LF+ V +F ++ +++FP E A+I+RE SG NA+GPY+ A +P A GP + +YW G+ ++ + F + + + + +G ++ S +P +G+T+LP APM+MFSG+LY++++VP L+WM S+IN+ F+ +++ + LP Q ++ Sbjct: 389 LGLLFSLVVADIFMGSLGVIMRFPSEWAIIVRECYSGVNAVGPYLFASFWGILPMAYGPFLLVTVMYWMTGMDPNFVAYLKFAGIYLSFDIACLELGQFVSSLSGNPMVGMTILPAFVAPMIMFSGVLYQKSTVPVWLSWMHHVSLINYSFSALMAEQIHILPENQANLL 558
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|553181628|ref|XP_005853597.1| (abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526] >gi|553191702|ref|XP_005855436.1| abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526] >gi|422293622|gb|EKU20922.1| abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526] >gi|422295464|gb|EKU22763.1| abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 104.375 bits (259), Expect = 5.084e-25 Identity = 56/150 (37.33%), Postives = 91/150 (60.67%), Query Frame = 0 Query: 2 GMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGF 151 G LF+ VTLL ++IA + FP + A+++REY +G N+ Y + LA P +L +I + Y+ GL S F + + ++ +A S+G + FS +P +GL++LP+ PM++FSG+LYER SVPP+L W+ S++N+ F Sbjct: 29 GYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSF 178
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585106124|gb|EWM24607.1| (abc subfamily abcg [Nannochloropsis gaditana]) HSP 1 Score: 110.538 bits (275), Expect = 7.445e-25 Identity = 59/154 (38.31%), Postives = 95/154 (61.69%), Query Frame = 0 Query: 2 GMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALML 155 G LF+ VTLL ++IA + FP + A+++REY +G N+ Y + LA P +L +I + Y+ GL S F + + ++ +A S+G + FS +P +GL++LP+ PM++FSG+LYER SVPP+L W+ S++N+ FALM+ Sbjct: 463 GYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMV 616 The following BLAST results are available for this feature:
BLAST of EWM28391.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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