EWM28391.1, cds2282 (CDS) Nannochloropsis gaditana

Overview
NameEWM28391.1
Unique Namecds2282
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:42268..42345 -
Alignment locationCM002459.1:41887..42019 -
Alignment locationCM002459.1:41565..41693 -
Alignment locationCM002459.1:41328..41412 -
Alignment locationCM002459.1:40980..41104 -

Link to JBrowse

Properties
Property NameValue
Start range40980
Start range.
Protein idEWM28391.1
Productabc transmembrane transporter
Partialtrue
Orig transcript idgnl|cribi|Naga_101921g1.1291.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:42268..42345 -
CM002459.1supercontigCM002459.1:41887..42019 -
CM002459.1supercontigCM002459.1:41565..41693 -
CM002459.1supercontigCM002459.1:41328..41412 -
CM002459.1supercontigCM002459.1:40980..41104 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013525ABC_2_trans
Homology
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585110773|gb|EWM28391.1| (abc transmembrane transporter, partial [Nannochloropsis gaditana])

HSP 1 Score: 362.073 bits (928), Expect = 1.747e-126
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query:    1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIVRKAGGREGGREGG 183
            MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIVRKAGGREGGREGG
Sbjct:    1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIVRKAGGREGGREGG 183          
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585106190|gb|EWM24668.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 144.05 bits (362), Expect = 3.951e-37
Identity = 69/164 (42.07%), Postives = 106/164 (64.63%), Query Frame = 0
Query:    1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPS 164
            +G+LF+  V  LF +++A M++FPL+ A+++REY SG+NAIGPY+ A+ + D P   GP +    LYW  G+ S    F  F    +    ++ SMG  ++ FS +P IGLT+LP   APM+MFSG+LYER+SVP  L+W+ + SI+N+ F+ ++  +   LP 
Sbjct:  326 LGLLFSVVVANLFTSSLAVMMRFPLDWAIVVREYFSGSNAIGPYLVARFIVDAPMGYGPFLLITLLYWMTGMDSDIGKFVIFALTFISGNWASTSMGQYVSSFSANPFIGLTILPAFVAPMIMFSGILYERSSVPAWLSWLQTLSIVNYSFSALMIQQIHILPK 489          
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585110259|gb|EWM27919.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 139.043 bits (349), Expect = 4.828e-35
Identity = 63/172 (36.63%), Postives = 108/172 (62.79%), Query Frame = 0
Query:    1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIVRK 172
            MG++F+A V  +F   +  +++FP+E  +++RE++SGANA+GPYM A+    +P + GP++ S  +YW  G+     T+  F  + V    S  S+G  ++ FS +P + +T++P    PM+MFSGLL ER+SVP  LAW+   S++N+ F  +++ +   LP  QG +V++
Sbjct:  431 MGLIFSAVVGNVFTGCLGVVMRFPMEWTLVVREFSSGANAVGPYMIARFFTTLPLSYGPVLMSSIIYWCTGMDPDAGTYLIFVLIFVSFNWSCFSLGQWISSFSANPLVAMTIMPGFVTPMIMFSGLLIERSSVPVWLAWIEDVSVVNYAFDTLMAQQMHILPGNQGEVVQQ 602          
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|553189117|ref|XP_005854935.1| (atp-binding cassette [Nannochloropsis gaditana CCMP526] >gi|422294123|gb|EKU21423.1| atp-binding cassette [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 139.043 bits (349), Expect = 5.076e-35
Identity = 63/172 (36.63%), Postives = 108/172 (62.79%), Query Frame = 0
Query:    1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIVRK 172
            MG++F+A V  +F   +  +++FP+E  +++RE++SGANA+GPYM A+    +P + GP++ S  +YW  G+     T+  F  + V    S  S+G  ++ FS +P + +T++P    PM+MFSGLL ER+SVP  LAW+   S++N+ F  +++ +   LP  QG +V++
Sbjct:  431 MGLIFSAVVGNVFTGCLGVVMRFPMEWTLVVREFSSGANAVGPYMIARFFTTLPLSYGPVLMSSIIYWCTGMDPDAGTYLIFVLIFVSFNWSCFSLGQWISSFSANPLVAMTIMPGFVTPMIMFSGLLIERSSVPVWLAWIEDVSVVNYAFDTLMAQQMHILPGNQGEVVQQ 602          
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585109183|gb|EWM27013.1| (white [Nannochloropsis gaditana])

HSP 1 Score: 132.88 bits (333), Expect = 7.561e-33
Identity = 64/165 (38.79%), Postives = 106/165 (64.24%), Query Frame = 0
Query:    1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSG 165
            MGM+FA  V +L   ++   +KFP+E ++ +REY +GANA+GPY   + +ADIP+    ++  +  YW +GL +S+++F  +  +  L+   + S G   + FS DP +GL + PV+  PM++FSG+LYER+SVP  L W+ + S++N+GFA ++  E  +L  G
Sbjct:  414 MGMMFALVVAVLILCSMNVALKFPVEWSIFMREYYTGANALGPYFIGRTIADIPFLALFLLLVIVPYWMSGLTASFASFIRYCFIFFLIINGSASTGYLASSFSADPVLGLAITPVIDTPMILFSGMLYERSSVPLYLKWIQNISVVNYGFAALVINECNSLGDG 578          
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|553193491|ref|XP_005855787.1| (atp-binding cassette subfamily member group wbc protein 2, partial [Nannochloropsis gaditana CCMP526] >gi|422293273|gb|EKU20573.1| atp-binding cassette subfamily member group wbc protein 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 122.479 bits (306), Expect = 1.605e-31
Identity = 60/153 (39.22%), Postives = 95/153 (62.09%), Query Frame = 0
Query:   20 MVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIVRK 172
            +++ PL+  ++LREY +GANA GPY+ AK L ++P+A GP++    LYW  GL  S + F  F  V  L  Q++ +M + +   S +P + L +LP    PMV+FSG LY+ A++P  LAW+   SI+N+GFA +++L+   LP+    +  K
Sbjct:   23 ILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPAELRGVALK 175          
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585109266|gb|EWM27089.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 122.479 bits (306), Expect = 5.243e-29
Identity = 59/145 (40.69%), Postives = 93/145 (64.14%), Query Frame = 0
Query:   20 MVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPS 164
            +++ PL+  ++LREY +GANA GPY+ AK L ++P+A GP++    LYW  GL  S + F  F  V  L  Q++ +M + +   S +P + L +LP    PMV+FSG LY+ A++P  LAW+   SI+N+GFA +++L+   LP+
Sbjct:  445 ILRAPLDWPLLLREYFAGANAAGPYLLAKILYELPFAYGPLLLVAFLYWMTGLTPSLAAFLQFAGVVALTTQASCAMALMVGSLSANPMLTLGILPAFITPMVLFSGFLYDTATLPSYLAWLPKISIVNYGFAALITLQQSLLPA 589          
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585108726|gb|EWM26638.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 119.398 bits (298), Expect = 4.932e-28
Identity = 56/170 (32.94%), Postives = 103/170 (60.59%), Query Frame = 0
Query:    1 MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALMLSLEAPALPSGQGAIV 170
            +G+LF+  V  +F  ++  +++FP E A+I+RE  SG NA+GPY+ A     +P A GP +    +YW  G+  ++  +  F  + +    + + +G  ++  S +P +G+T+LP   APM+MFSG+LY++++VP  L+WM   S+IN+ F+ +++ +   LP  Q  ++
Sbjct:  389 LGLLFSLVVADIFMGSLGVIMRFPSEWAIIVRECYSGVNAVGPYLFASFWGILPMAYGPFLLVTVMYWMTGMDPNFVAYLKFAGIYLSFDIACLELGQFVSSLSGNPMVGMTILPAFVAPMIMFSGVLYQKSTVPVWLSWMHHVSLINYSFSALMAEQIHILPENQANLL 558          
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|553181628|ref|XP_005853597.1| (abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526] >gi|553191702|ref|XP_005855436.1| abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526] >gi|422293622|gb|EKU20922.1| abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526] >gi|422295464|gb|EKU22763.1| abc subfamily abcg, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 104.375 bits (259), Expect = 5.084e-25
Identity = 56/150 (37.33%), Postives = 91/150 (60.67%), Query Frame = 0
Query:    2 GMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGF 151
            G LF+  VTLL  ++IA  + FP + A+++REY +G N+   Y   + LA  P +L  +I  +  Y+  GL  S   F  +  +  ++  +A S+G   + FS +P +GL++LP+   PM++FSG+LYER SVPP+L W+   S++N+ F
Sbjct:   29 GYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSF 178          
BLAST of EWM28391.1 vs. NCBI_GenBank
Match: gi|585106124|gb|EWM24607.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 110.538 bits (275), Expect = 7.445e-25
Identity = 59/154 (38.31%), Postives = 95/154 (61.69%), Query Frame = 0
Query:    2 GMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCLADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVALACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHGFALML 155
            G LF+  VTLL  ++IA  + FP + A+++REY +G N+   Y   + LA  P +L  +I  +  Y+  GL  S   F  +  +  ++  +A S+G   + FS +P +GL++LP+   PM++FSG+LYER SVPP+L W+   S++N+ FALM+
Sbjct:  463 GYLFSLLVTLLIASSIAVCMNFPFDFAILMREYYAGVNSPLGYFLGRTLASEPPSLAFMIMGILPYFMVGLAPSAVAFGWYCLLFFIVNFAAQSIGYLASSFSANPVVGLSILPLFITPMILFSGMLYERNSVPPSLRWIQDISVMNYSFALMV 616          
The following BLAST results are available for this feature:
BLAST of EWM28391.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110773|gb|EWM28391.1|1.747e-126100.00abc transmembrane transporter, partial [Nannochlor... [more]
gi|585106190|gb|EWM24668.1|3.951e-3742.07abc subfamily abcg [Nannochloropsis gaditana][more]
gi|585110259|gb|EWM27919.1|4.828e-3536.63abc subfamily abcg [Nannochloropsis gaditana][more]
gi|553189117|ref|XP_005854935.1|5.076e-3536.63atp-binding cassette [Nannochloropsis gaditana CCM... [more]
gi|585109183|gb|EWM27013.1|7.561e-3338.79white [Nannochloropsis gaditana][more]
gi|553193491|ref|XP_005855787.1|1.605e-3139.22atp-binding cassette subfamily member group wbc pr... [more]
gi|585109266|gb|EWM27089.1|5.243e-2940.69abc subfamily abcg [Nannochloropsis gaditana][more]
gi|585108726|gb|EWM26638.1|4.932e-2832.94abc subfamily abcg [Nannochloropsis gaditana][more]
gi|553181628|ref|XP_005853597.1|5.084e-2537.33abc subfamily abcg, partial [Nannochloropsis gadit... [more]
gi|585106124|gb|EWM24607.1|7.445e-2538.31abc subfamily abcg [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2290rna2290Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications