rna2290, rna2290 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2290
Unique Name	rna2290
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	219
Alignment location	CM002459.1:40980..42375 -

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Properties


Property Name	Value
Product	abc transmembrane transporter
Orig transcript id	gnl\|cribi\|Naga_101921g1.1291.mrna
Orig protein id	gnl\|cribi\|Naga_101921g1.1291
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:40980..42375 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101921g1	gene2188	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2290	rna2290-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28391.1	cds2282	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:40980..42375-
coding sequence from alignment at CM002459.1:40980..42375-

mRNA sequence

>rna2290 ID=rna2290|Name=rna2290|organism=Nannochloropsis gaditana|type=mRNA|length=219bp
ATGACTCCTCGGACGCGCTTCGAGCCCATTTTGTCGCCCTATTTCTCATC
CTCTCCGCCTCTTATTTGGAAGGCTCGGTCATTCGCCCCCTCTCCAGGGC
AAGGTGCAAGAGCGATAGAAGGGCGGAGCAGGCCCCGCGTCAGAAAGAAG
GGAAACGACGAGTTCACAAGACGATTCATGCGCGCGACCCGGAACTTGTC
GAGGCGTGAGAGAGGTTAG

protein sequence of rna2290

>rna2290-protein ID=rna2290-protein|Name=rna2290|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MGMLFAASVTLLFNAAIAHMVKFPLEGAVILREYTSGANAIGPYMAAKCL
ADIPYALGPIIFSVALYWTAGLLSSWSTFWCFTAVAVLMAQSAMSMGVAL
ACFSLDPSIGLTLLPVLTAPMVMFSGLLYERASVPPALAWMSSFSIINHG
FALMLSLEAPALPSGQGAIVRKAGGREGGREGG

mRNA from alignment at CM002459.1:40980..42375-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2290 ID=rna2290|Name=rna2290|organism=Nannochloropsis gaditana|type=mRNA|length=1396bp|location=Sequence derived from alignment at CM002459.1:40980..42375- (Nannochloropsis gaditana)
TTCCAGGCCACCGCACACTGGCGCGACCTGATGGGCATGCTCTTCGCGGC
CTCCGTGACTCTGCTCTTCAACGCCGCCATCGCCCACATGGTCAAGTTCC
CCTTGGAGGTGCGGGAAAAGAAAGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGAAGGGAGGGAGGGAAGAGGTCCATCCTAGCTTGAGCGTCGACTC
TTTTCATCGTCCGTGTTCTTCTGCACCGTTTCCTTTTCTTCTACCGCCCC
TTTTCCTTATTCAACCGCTCCTGTGGCACCACTCCTCCTCTCATGCTCCC
TCCGGCCCTCACTCCCGTCCTCCCCCCCGCCTCCCCTCCCGCCCTCGTGC
CTTCAGGGCGCTGTCATCCTCCGCGAGTACACGAGCGGGGCCAACGCCAT
CGGCCCCTATATGGCTGCCAAATGCCTCGCGGACATCCCTTACGCCCTTG
GCCCTATTATCTTCTCGGTTGCATTGTATTGGACCGCAGGTACCCCTCCA
CCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTCCTTCCTCACCTCTCGAGG
TCACCCATCCCGGTCTTTTTCTCTTCTGACCGCATTCAAACACCCATATG
AGCCGATCTTACCCCTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCCCTCTCCCTCCCTCCCTCCCTCAGGCCTCCTCTCGAGCTGGT
CCACCTTCTGGTGTTTCACGGCCGTGGCCGTCCTCATGGCTCAGTCCGCC
ATGTCGATGGGGGTGGCTTTGGCCTGCTTCTCCCTCGACCCCTCCATCGG
CCTCACTCTCTGTGCGTGGCGCCTCCCTCTCCTTCCCTGATGCTTCCTCT
TCTTTCCTTCGCCCTTCTTACTGACCCCTGAATGCGGCTCGGCTCTTACC
CGTATAACGAGTTCACACGCCCACCTCCTCTCCCCTTCCCTCCTTCCTTT
CCTTTTGCCTTAGTGCCGGTGTTGACGGCGCCCATGGTCATGTTCTCGGG
CCTGCTCTACGAGAGAGCTTCCGTGCCGCCGGCTTTGGCGTGGATGAGGT
GAGAGGCAGGAGAGGAACAGGAAGGGGGGGGGGGAAGGGATGCGAGCGCA
GGATGACACCCGAAAAGGGGGAACAGGGGAAGCGCGGCAGGGAGGGAGGG
AGGGAAGGAGGGGCGGAGGAAGTGCCTGAGGCTGGGGATGGTTGGATGGG
AATACGCAGGGATGAGAGACATGTCTGTGGCTGGGGAGTCCTCACTTCTT
GTCTCCTTCACCCTGACACAGCTCTTTCTCGATCATCAATCATGGCTTTG
CCCTTATGCTCTCCTTGGAGGCACCTGCCTTGCCCTCCGGGCAGGGGGCC
ATCGTAAGGAAGGCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA

Coding sequence (CDS) from alignment at CM002459.1:40980..42375-

>rna2290 ID=rna2290|Name=rna2290|organism=Nannochloropsis gaditana|type=CDS|length=2750bp|location=Sequence derived from alignment at CM002459.1:40980..42375- (Nannochloropsis gaditana)
CTCTTTCTCGATCATCAATCATGGCTTTGCCCTTATGCTCTCCTTGGAGG
CACCTGCCTTGCCCTCCGGGCAGGGGGCCATCGTAAGGAAGGCGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGATGCCGGTGTTGACGGCGCCCATGGT
CATGTTCTCGGGCCTGCTCTACGAGAGAGCTTCCGTGCCGCCGGCTTTGG
CGTGGATGAGGCCTCCTCTCGAGCTGGTCCACCTTCTGGTGTTTCACGGC
CGTGGCCGTCCTCATGGCTCAGTCCGCCATGTCGATGGGGGTGGCTTTGG
CCTGCTTCTCCCTCGACCCCTCCATCGGCCTCACTCTCTGGCGCTGTCAT
CCTCCGCGAGTACACGAGCGGGGCCAACGCCATCGGCCCCTATATGGCTG
CCAAATGCCTCGCGGACATCCCTTACGCCCTTGGCCCTATTATCTTCTCG
GTTGCATTGTATTGGACCGCAGATGGGCATGCTCTTCGCGGCCTCCGTGA
CTCTGCTCTTCAACGCCGCCATCGCCCACATGGTCAAGTTCCCCTTGGAG
CTCTTTCTCGATCATCAATCATGGCTTTGCCCTTATGCTCTCCTTGGAGG
CACCTGCCTTGCCCTCCGGGCAGGGGGCCATCGTAAGGAAGGCGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGATGCCGGTGTTGACGGCGCCCATGGT
CATGTTCTCGGGCCTGCTCTACGAGAGAGCTTCCGTGCCGCCGGCTTTGG
CGTGGATGAGGCCTCCTCTCGAGCTGGTCCACCTTCTGGTGTTTCACGGC
CGTGGCCGTCCTCATGGCTCAGTCCGCCATGTCGATGGGGGTGGCTTTGG
CCTGCTTCTCCCTCGACCCCTCCATCGGCCTCACTCTCTGGCGCTGTCAT
CCTCCGCGAGTACACGAGCGGGGCCAACGCCATCGGCCCCTATATGGCTG
CCAAATGCCTCGCGGACATCCCTTACGCCCTTGGCCCTATTATCTTCTCG
GTTGCATTGTATTGGACCGCAGATGGGCATGCTCTTCGCGGCCTCCGTGA
CTCTGCTCTTCAACGCCGCCATCGCCCACATGGTCAAGTTCCCCTTGGAG
CTCTTTCTCGATCATCAATCATGGCTTTGCCCTTATGCTCTCCTTGGAGG
CACCTGCCTTGCCCTCCGGGCAGGGGGCCATCGTAAGGAAGGCGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGATGCCGGTGTTGACGGCGCCCATGGT
CATGTTCTCGGGCCTGCTCTACGAGAGAGCTTCCGTGCCGCCGGCTTTGG
CGTGGATGAGGCCTCCTCTCGAGCTGGTCCACCTTCTGGTGTTTCACGGC
CGTGGCCGTCCTCATGGCTCAGTCCGCCATGTCGATGGGGGTGGCTTTGG
CCTGCTTCTCCCTCGACCCCTCCATCGGCCTCACTCTCTGGCGCTGTCAT
CCTCCGCGAGTACACGAGCGGGGCCAACGCCATCGGCCCCTATATGGCTG
CCAAATGCCTCGCGGACATCCCTTACGCCCTTGGCCCTATTATCTTCTCG
GTTGCATTGTATTGGACCGCAGATGGGCATGCTCTTCGCGGCCTCCGTGA
CTCTGCTCTTCAACGCCGCCATCGCCCACATGGTCAAGTTCCCCTTGGAG
CTCTTTCTCGATCATCAATCATGGCTTTGCCCTTATGCTCTCCTTGGAGG
CACCTGCCTTGCCCTCCGGGCAGGGGGCCATCGTAAGGAAGGCGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGATGCCGGTGTTGACGGCGCCCATGGT
CATGTTCTCGGGCCTGCTCTACGAGAGAGCTTCCGTGCCGCCGGCTTTGG
CGTGGATGAGGCCTCCTCTCGAGCTGGTCCACCTTCTGGTGTTTCACGGC
CGTGGCCGTCCTCATGGCTCAGTCCGCCATGTCGATGGGGGTGGCTTTGG
CCTGCTTCTCCCTCGACCCCTCCATCGGCCTCACTCTCTGGCGCTGTCAT
CCTCCGCGAGTACACGAGCGGGGCCAACGCCATCGGCCCCTATATGGCTG
CCAAATGCCTCGCGGACATCCCTTACGCCCTTGGCCCTATTATCTTCTCG
GTTGCATTGTATTGGACCGCAGATGGGCATGCTCTTCGCGGCCTCCGTGA
CTCTGCTCTTCAACGCCGCCATCGCCCACATGGTCAAGTTCCCCTTGGAG
CTCTTTCTCGATCATCAATCATGGCTTTGCCCTTATGCTCTCCTTGGAGG
CACCTGCCTTGCCCTCCGGGCAGGGGGCCATCGTAAGGAAGGCGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGATGCCGGTGTTGACGGCGCCCATGGT
CATGTTCTCGGGCCTGCTCTACGAGAGAGCTTCCGTGCCGCCGGCTTTGG
CGTGGATGAGGCCTCCTCTCGAGCTGGTCCACCTTCTGGTGTTTCACGGC
CGTGGCCGTCCTCATGGCTCAGTCCGCCATGTCGATGGGGGTGGCTTTGG
CCTGCTTCTCCCTCGACCCCTCCATCGGCCTCACTCTCTGGCGCTGTCAT
CCTCCGCGAGTACACGAGCGGGGCCAACGCCATCGGCCCCTATATGGCTG
CCAAATGCCTCGCGGACATCCCTTACGCCCTTGGCCCTATTATCTTCTCG
GTTGCATTGTATTGGACCGCAGATGGGCATGCTCTTCGCGGCCTCCGTGA
CTCTGCTCTTCAACGCCGCCATCGCCCACATGGTCAAGTTCCCCTTGGAG

Synonyms

Publications