rna2279, rna2279 (mRNA) Nannochloropsis gaditana

Overview
Namerna2279
Unique Namerna2279
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3037
Alignment locationCM002459.1:4161..5290 -

Link to JBrowse

Properties
Property NameValue
Productprotein casp
Orig transcript idgnl|cribi|Naga_100206g6.1428.mrna
Orig protein idgnl|cribi|Naga_100206g6.1428
GenescdA
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:4161..5290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
scdAgene2178Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28396.1cds2271Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2279rna2279-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2279 ID=rna2279|Name=rna2279|organism=Nannochloropsis gaditana|type=mRNA|length=3037bp
TTCATCTTTTACGACCTCGACAAGACTACTCATGCTGTCATCTCAATACC
GCTATGTAAAATGACAGCAGGTTCTATGCGACTTAAGGAACGATATTGAA
CAGCCGGTGCACTTGCACCACTGCGATGCATTATGACAGGTACCTCCTAT
TTGTCTCCTCCTCAGCACCATCGGGGCGTGTCGATACAGTCTTCGCCTTC
TTTTGTGAAAGAGGACACCGTTCAAGTTCAAATATCGCATAAGGACGGAG
AAGAAAAAGAATCATGGTATCAGCAACCACTCAACAGCGTGATCTACGGC
ATTGTGGTATTTTTACTACAGGATAAGCCTGCAGAGGTTGTGGTTTCTAC
CGCCCTCGTCACATTGGGCTTGAGCACGGCTGTGCTTGGAGCTACTCTGA
TGGCCCTTGGGCACTATAAGCTTGCACGCCTGGTGTCTTATCTACCATTA
CCGGTGATCGGGGGGCAAATCGTCTTTATTGCGGCCTTCTGCTTCCGCGC
GGGCGTGGCGCTCTCTGTCGGCCACGACCTGGACTCTCTTCAGGCTTGGA
GAGCCCTGTACGATCCCCGGGCAGTTGTGCTGGTCCTTCCAGGCATCTTG
GCAGGCGTGGTGCTTTCAATAGTGGCCCATTCGTTTAAGCACTTTCTCGC
TTTGCCTGTGGCCATGGTCTGTGTGCCCCTCGTCTTCTACGGCGTGCTCT
TCTTGGCCGGAGAGAGCATGGAGGGGGCGAGGGACTTCGGCTGGGTGGGG
CCCGCCAATGCACCAGCATCTTGGCAGGCCTCCGTAGCGCTCTATCAGGT
CTGGCCGCCGGACTTATTAGGCCGGATCGAGTGGTGGGTGGTGCCCTACC
AGCTCCCCACGTTGCTGGGAATGATCTTTGTCGTCTCCTTCAGCAGCTGC
CTGGACATCGTGGCTATCGAGATGGACAGCGGTCGGCCGCTGAACAAAAA
CCACGAGCTTTCCACTGTGGGGGCCTCCAATCTCATCGCTGGTTTGTGCG
GGGGGTTTACGGGCTCCTACATATTCTCCCAGACCATCTTCACGTACCGC
ACGCAAACTCGTTCTCGACTCTGCGGCCTCGTCCTCATCATGGCGGAACT
GGCGGTCTTTTTCTGCGATGTGGATCTCATGTCCTACATCCCGCTGTACT
TTTTCGCTGCGACCCTTCATTTCATTACCTTTGAGCTGATGCTCGAGTGG
CTGGTGGAGGCGCGGCTGCGCATGACGGCCAAGGAGTACGTGGTCCTGTG
GACGACGTTTTTGGGCAATGTGGCTTTCGGCATTATTCCCGGCTTTGCCT
TGGGGATAGTGCTCTCGATGGCGATGTTTATAATTTCTTACGCCAAAAGC
ACCGCCCGGACTGCTCAGGCCCAGCGCCAACGCAGCCGCGTGGCGCGCCT
AAGGGGTGCGCGCAGGCTTCTCGACCACGGGAAGATTTTGACGCTAGAGC
TTAACGGGGCTATATTTTTTGGAAGCAGTATCACGACCCTCGAGCACATC
AAATCCTTGTTGGGGGTAGCGCAATCCCCTTCACGGAAAGCCAAAGAACG
ATCGACCGAGCGGAGAAAAGGAAAGATGGTGGGGTATCGTCCTTCTCGGA
CGCACTCCCGACGATCACTCACCGAGCAGGCAGAAATGTGGGCTGGCGGT
CAGAGCATTGGCTCTGCAGATGCTCATACGAAGTTTGCAGGAAGAAGAGT
GTCGTCCAATGCTTTGACAGGGAGCAGGAACAGGACCTTTCTAAACCTTT
CTAGCAGCTTGTGGACGCGCGTCTGGCACGGAGGGAGTGTTGACGCGCCT
AAGGAAGCGCAGGAGGCAGCTGTGGATGAAGAGGAAGCAACAGAAGCGTC
ACCGCTTGTTGGTCAGTCGTCTGCTGCCTCTCTGGCGGGGCTTGGCTCCT
CCCTTCCCCCCTCGTCTTCTCCGAGCCACGATGGCAGGAGTATTGGTGGC
GGTGCTTCCGCAGTCACCGGTACTTACGGGACCGGAATGAAGCCATTCAG
CGAAGCAATGACACAAGAAATGCAAGCGTCTGGTACTGGCGCTGCCAATC
ATTTTGCGAACGCCCCAAAGCCTCGCTTTCTCATACTGGATTTCCGACGG
GTGCCCGCTATCGATATGTCGAGTGTTGTGAATTGCTTTTTGCCGCTGCA
AACACTCTGCAAGGACGTGCAGGTCATTCTTTGCTACAGCAATTGCAACG
TCCGCGTAGAATTCTACTTAAGGGCAAACCGGCTGCTTGCAGACAACAAT
ACTCGCCTCTTTCCCACCCTGCACCAGGCGCTGGATTCCTGTGAGACGGC
TTTGCTCGCTGAAGAGTCGCAGCATACTCATGGGCATTCCCTGCGAGCCC
GGGCTTTCTCGTTGCGTGGAATGCAAGAGTTGAGCGTTGTGAGTGTCCTT
CGGAAACTGCTTTTGGAGGAGGAGGAAGAGGACGGAGAAGGACAGGAGAT
TGGACCGGGAATGGCAAGTTCCGTTGATGAGGATGCGTTGGAGATGATAG
CTCACTACGCACGAGAAGAGACATTTCGCGAGGAAGATTCCATCTTCTAC
AAGGAAGACATCTCTGACTCTTTCTACCTCATTCTCTCTGGGGAGGTGGC
TCTTGAATCGCTGGAAGAGGACGCCAGAGAGGAGCCTATGAGGGCCGCGG
ACCGTTTGCCCTCGTGGGGAGGTGGAAGCCGGGACAGGCGTCGACGGCGC
GTGGAGGTTGTGCTGCATTCAGGCTCGCTCTTTGGCTTCGTGGACTTCTT
TTTAGAAAACCAACGCCGGCGATTCTTCGCGCGAGCGATGACGCCTGTCA
AGCTCGGTGTCTTCAGTCAGACAGCGCTCAGGCGTCTCGAGGAAGAACAT
CCGCGCTTGATGGTGTTGGTCCAAAAGCTCTTGCTGAAACAATTCTCTAT
CGAACTCGGGAACGTATCCGTCTTGTAAATACACATGCAAAAGGAATCAT
TGCCAGATAGAGTAGAGGTGATGGGCAAGAGCAAGTAGAAAGTACATGTC
ACATTTCAAAAACAAGACATACAACGAAGAGCGAAAT
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protein sequence of rna2279

>rna2279-protein ID=rna2279-protein|Name=rna2279|organism=Nannochloropsis gaditana|type=polypeptide|length=345bp
MSGRRRIAELEGERARLENEKGSAEARVVELSALISRLEDDLARVASKGV
GDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQ
PAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQ
AESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQR
NVVNDEGKGAQEYALEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVA
ERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYM
WGHHHCTDLHYQADVLMGHPPEPLGMQSLSMGNHAVGGGANHLEG
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mRNA from alignment at CM002459.1:4161..5290-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2279 ID=rna2279|Name=rna2279|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp|location=Sequence derived from alignment at CM002459.1:4161..5290- (Nannochloropsis gaditana)
ATGTCGGGACGTCGCCGGATTGCTGAGCTGGAGGGGGAGCGGGCGCGCCT
AGAGAACGAGAAAGGGAGCGCTGAGGCCAGGGTGGTGGAATTGAGTGCGC
TGATTTCCCGGCTGGAGGATGACCTGGCGCGTGTGGCCAGCAAGGGGGTC
GGGGACGTTATGGCCGAGGGGACGGTCGGCTCACAATCGCGGACGCCCTC
AGTCCCCCCCGGCCGGGGACCGTCCTGGAAGGTGGCGTCCTCCCGGGACG
AGGAAGATCTAGACGTTGATATGCACGAGCTCTTGGCCTCGACGACACAG
CCCGCGCCCGCCCTTGGCGCGTCCCCCTCGGCCTCCCTCGACCTGGTCCG
GATCCTCCAAGCCCAGCGCGACAGGTACAAGGCGCGAACCCGCGAGCTCG
AGGGCCGACTGGCGGCCGTGGAGCAAGAGTCGGGTCGACACAAGGCACAG
GCGGAGTCGATGCTGCGCGACAATCTTAAGCTCTACGAGAAGGTCCGCTT
TCTGCAGAGCTATAAGAAGGGGAGGGTCGGTCCAGACGCACTCGACAGTA
CTCAAGATAAGAGGATGTCCGGGTTAGAACACTCGACGCTCCATCAACGG
AATGTCGTCAACGACGAGGGGAAAGGGGCTCAAGAATACGCGCTGGAAGC
GGGCCGAGTGCCGACTGGCGCAGGGGCTGCCGCAACAGAAGCTCGTTATC
GCGCCATGTACGAAGAGCAAATGAACCCTTTTACCGCCTTTTCAGTTGCA
GAGCGCGTCCGTAAGTATCAAGACTTGAGCGTAATCGACAAAATAACGCT
CCAGACAACACGGGCGTTTCTTGCCCACAAAAAAGCGCGGATGGCGGTCT
TCTTTTACGCGGTGAGTCTGCACCTGCTGGTCTTCCTGACTCTGTACATG
TGGGGGCATCACCACTGCACTGACCTGCATTATCAAGCAGACGTGCTCAT
GGGCCACCCACCCGAGCCGTTAGGGATGCAATCATTGTCAATGGGGAATC
ATGCGGTAGGAGGAGGAGCCAATCATTTGGAAGGCTAAATGAGAATATGG
CTGATCAGTAACCAAAGAACAAATAAGCGTCGTCTCTTTACTGCACTCCG
CTCTATAGAAATAAATCTTCACGGTGAGCA
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Coding sequence (CDS) from alignment at CM002459.1:4161..5290-

>rna2279 ID=rna2279|Name=rna2279|organism=Nannochloropsis gaditana|type=CDS|length=1038bp|location=Sequence derived from alignment at CM002459.1:4161..5290- (Nannochloropsis gaditana)
ATGTCGGGACGTCGCCGGATTGCTGAGCTGGAGGGGGAGCGGGCGCGCCT
AGAGAACGAGAAAGGGAGCGCTGAGGCCAGGGTGGTGGAATTGAGTGCGC
TGATTTCCCGGCTGGAGGATGACCTGGCGCGTGTGGCCAGCAAGGGGGTC
GGGGACGTTATGGCCGAGGGGACGGTCGGCTCACAATCGCGGACGCCCTC
AGTCCCCCCCGGCCGGGGACCGTCCTGGAAGGTGGCGTCCTCCCGGGACG
AGGAAGATCTAGACGTTGATATGCACGAGCTCTTGGCCTCGACGACACAG
CCCGCGCCCGCCCTTGGCGCGTCCCCCTCGGCCTCCCTCGACCTGGTCCG
GATCCTCCAAGCCCAGCGCGACAGGTACAAGGCGCGAACCCGCGAGCTCG
AGGGCCGACTGGCGGCCGTGGAGCAAGAGTCGGGTCGACACAAGGCACAG
GCGGAGTCGATGCTGCGCGACAATCTTAAGCTCTACGAGAAGGTCCGCTT
TCTGCAGAGCTATAAGAAGGGGAGGGTCGGTCCAGACGCACTCGACAGTA
CTCAAGATAAGAGGATGTCCGGGTTAGAACACTCGACGCTCCATCAACGG
AATGTCGTCAACGACGAGGGGAAAGGGGCTCAAGAATACGCGCTGGAAGC
GGGCCGAGTGCCGACTGGCGCAGGGGCTGCCGCAACAGAAGCTCGTTATC
GCGCCATGTACGAAGAGCAAATGAACCCTTTTACCGCCTTTTCAGTTGCA
GAGCGCGTCCGTAAGTATCAAGACTTGAGCGTAATCGACAAAATAACGCT
CCAGACAACACGGGCGTTTCTTGCCCACAAAAAAGCGCGGATGGCGGTCT
TCTTTTACGCGGTGAGTCTGCACCTGCTGGTCTTCCTGACTCTGTACATG
TGGGGGCATCACCACTGCACTGACCTGCATTATCAAGCAGACGTGCTCAT
GGGCCACCCACCCGAGCCGTTAGGGATGCAATCATTGTCAATGGGGAATC
ATGCGGTAGGAGGAGGAGCCAATCATTTGGAAGGCTAA
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Synonyms
Publications