EWM28396.1, cds2271 (CDS) Nannochloropsis gaditana

Overview
NameEWM28396.1
Unique Namecds2271
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:4253..5290 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28396.1
Productprotein casp
Orig transcript idgnl|cribi|Naga_100206g6.1428.mrna
GenescdA
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:4253..5290 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006891intra-Golgi vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
GO:0030173integral component of Golgi membrane
Vocabulary: INTERPRO
TermDefinition
IPR012955CASP_C
Homology
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|585110780|gb|EWM28396.1| (protein casp [Nannochloropsis gaditana])

HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0
Query:    1 MSGRRRIAELEGERARLENEKGSAEARVVELSALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYMWGHHHCTDLHYQADVLMGHPPEPLGMQSLSMGNHAVGGGANHLEG 345
            MSGRRRIAELEGERARLENEKGSAEARVVELSALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYMWGHHHCTDLHYQADVLMGHPPEPLGMQSLSMGNHAVGGGANHLEG
Sbjct:    1 MSGRRRIAELEGERARLENEKGSAEARVVELSALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYMWGHHHCTDLHYQADVLMGHPPEPLGMQSLSMGNHAVGGGANHLEG 345          
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|299115281|emb|CBN75558.1| (protein involved in intra-Golgi vesicle-mediated transport [Ectocarpus siliculosus])

HSP 1 Score: 140.198 bits (352), Expect = 3.449e-33
Identity = 85/213 (39.91%), Postives = 110/213 (51.64%), Query Frame = 0
Query:  118 ILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAGRVPTGAGAA------------------------ATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYMWGHHHC 306
            I+QAQRDR++ R ++LE      ++E+   +   E++ RDNL+LYEKVRFLQSY++G  G D                   + NV+             AG V  G G                          ATEARY  +YE ++NPFT FS  ER RKYQ+L+V +KITL TTR FL +K AR  VFFY V LH++VF TL  W H H 
Sbjct:  496 IVQAQRDRFRRRIKKLEAEREDEQRETRAAQGVMENLQRDNLQLYEKVRFLQSYQRGATGAD-------------------KNNVL-----------AAAGGVTPGIGDVEAGGGGGGGGRGAAREGEEGGSRKATEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTLNYWTHSHS 678          
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|831770317|ref|XP_012752968.1| (hypothetical protein SAMD00019534_071070 [Acytostelium subglobosum LB1] >gi|735853600|dbj|GAM23932.1| hypothetical protein SAMD00019534_071070 [Acytostelium subglobosum LB1])

HSP 1 Score: 131.339 bits (329), Expect = 4.537e-30
Identity = 104/336 (30.95%), Postives = 160/336 (47.62%), Query Frame = 0
Query:    8 AELEGERARLENEKGSAEARVVELSALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPA-----LGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGK--GAQEYALEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYMWGHHHCTDLHYQADVLMGHPPEPLG--MQSLSMGNH 334
            +EL+  R ++E      E+  VE SALI RLE+DLA     G G+        SQS         GP+  +AS      +    H   +  TQ  P      L    S    ++ I+  QRDR+K +  +LE   A +E++    K +  S+ +DN+KLYEK+RFLQSY K R G                        V+    K  G + Y +E G          TE +Y  +YE+ +NPF +F+  E+ R+Y++++  +++ L T+R FL+ K +R+ +F Y+V LHLLVF+TLY       T   +  D  MG  P  +   +++ +  NH
Sbjct:  468 SELDESRRQVE----QLESIQVEQSALILRLEEDLA--VRGGGGNSGNVNLRSSQS---------GPTNDLASLIQSSPISSLSHSTNSGITQITPQASSGDLTGVQSKDDKMLDIVIGQRDRFKTKNLQLENEKAQLEKQLETCKLEVHSLKQDNIKLYEKIRFLQSYDKNRGG-----------------------GVITGNAKRAGDRNYDMERGGTTASTSNNDTEEKYGKLYEDSINPFLSFNKKEKYRRYKEMNTAERVILNTSRFFLSTKYSRLFLFIYSVLLHLLVFVTLYKLA--VTTAEQHDPDFQMGGGPPDIAHMLENKTNNNH 763          
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|1160566599|ref|XP_020428509.1| (C-terminal CASP domain-containing protein [Polysphondylium pallidum PN500] >gi|281202172|gb|EFA76377.1| C-terminal CASP domain-containing protein [Polysphondylium pallidum PN500])

HSP 1 Score: 128.642 bits (322), Expect = 4.400e-29
Identity = 89/306 (29.08%), Postives = 151/306 (49.35%), Query Frame = 0
Query:    8 AELEGERARLENEKGSAEARVVELSALISRLEDDLARVASKGVGDVMAEG-TVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTT-QPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAGRVP------------TGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLY 299
             EL+  R R++      E+  +E S LI RLE+D   + ++G   ++  G  +G+     +  P    S  + S      L+  ++ L  ST+ Q    + +     LD+V     QRDR+K +  ELEG  + +E++    K +  S+ +DN+KLYEK+RFLQSY K R G             G+         +  +  +    Y LE                 +      TE +Y  +YE+ +NPF +F+  E+ R+Y++++  +++ L T+R FL++K +R+ +F Y++ LHLLVF+TLY
Sbjct:  224 TELDESRRRVQ----QLESIQIEQSQLIHRLEED---ITTRGGSSMLNNGGLIGNSGNVNANQPQDLES--LISQSTTPSLNQSLNNLPDSTSSQSTIVVQSKDDKMLDIVV---GQRDRFKVKNLELEGEKSQLEKQLETCKLETSSLKQDNIKLYEKIRFLQSYDKNRGG-------------GI---------ITGNPKRAENSYDLERAGGGSSGSGGGSGGGRSNNTGGETEEKYGKLYEDSINPFLSFNKKEKYRRYKEMNTAERVILNTSRFFLSNKYSRLFLFIYSILLHLLVFITLY 495          
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|330827631|ref|XP_003291876.1| (hypothetical protein DICPUDRAFT_92761 [Dictyostelium purpureum] >gi|325077910|gb|EGC31592.1| hypothetical protein DICPUDRAFT_92761 [Dictyostelium purpureum])

HSP 1 Score: 120.168 bits (300), Expect = 7.544e-29
Identity = 69/207 (33.33%), Postives = 115/207 (55.56%), Query Frame = 0
Query:  115 LVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQ----DKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAG-RVPTGA--GAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYMWGHHHCTDLHYQAD 314
            ++ I+  QRDR+KA+  EL    + +E++    + + +S+  DN+KLYEK+RFLQSY K + G +   S       KR S  +                   Y +E G  V +G+  G   TE RY  +YEE +NPF +F+  E+ R+Y++++  +++ L ++R FL++K +R+ +F Y++ LHL+VF TLY       T+ HY  +
Sbjct:    1 MLEIVIGQRDRFKAKIDELGIEKSKLEKQLETSRQETQSLKNDNIKLYEKIRFLQSYDKNKSGGNNSGSINIGAGGKRSSNRD------------------TYDIERGVDVSSGSNNGGPETEERYGKLYEESINPFLSFNKKEKYRRYKEMNTAERVILNSSRFFLSNKYSRLFLFIYSILLHLMVFATLYRLA-TITTEQHYDNN 188          
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|66810812|ref|XP_639113.1| (hypothetical protein DDB_G0283375 [Dictyostelium discoideum AX4] >gi|60467746|gb|EAL65764.1| hypothetical protein DDB_G0283375 [Dictyostelium discoideum AX4] >gi|94467438|dbj|BAE93880.1| similar to CCAAT displacement protein [Dictyostelium discoideum])

HSP 1 Score: 122.479 bits (306), Expect = 5.535e-27
Identity = 65/192 (33.85%), Postives = 115/192 (59.90%), Query Frame = 0
Query:  115 LVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAG-RVPTGA------GAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLY 299
            ++ I+ +QRDR+K +  ELE   + +E++    + +  S+  DN+KLYEK+RFLQSY K + G   +++          +  +H +   N+ G   + Y +E G  +P+ +      G   TE +Y  +YEE +NPF +F+  E+ R+Y++++  +++ L  +R FL++K +R+ +F Y+V LHL+VFLTLY
Sbjct:  647 MLDIVISQRDRFKTKIVELESDKSKLEKQLDSCRQELSSLKTDNIKLYEKIRFLQSYDKNKSGGGGINNA---------NKEIHSKR--NNSG-FEKSYDVERGLDIPSSSSSSSSQGGPETEEKYGKLYEESINPFLSFNKKEKYRRYREMNTAERVILNGSRFFLSNKYSRLFLFIYSVLLHLMVFLTLY 826          
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|971514288|dbj|GAQ83909.1| (hypothetical protein KFL_001680045 [Klebsormidium nitens])

HSP 1 Score: 122.094 bits (305), Expect = 6.989e-27
Identity = 102/328 (31.10%), Postives = 153/328 (46.65%), Query Frame = 0
Query:    2 SGRRRIAELEGERARL---ENEKGSAEARVVELS-------ALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKG--AQEYA---------LEAGRVP---------TGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLY 299
            + R+  AEL   R  L   +NE G+A  RV EL         L+ +LEDDL          V A+G  G            G SW+      +  L     E   S+ + AP  G+       ++ I+ AQR+R++ R  +LE     +    GR + +   +  DN+ LY+K+RFL+++   +  P+    ++ +R+ G +   +    VV   G G  +  YA          E GR P         TG GA   E RYR MYE++M+PF  F   E+ + Y+ L + DKITL + R FL++K AR  +FFY + LH L+F  LY
Sbjct:  437 TNRKLAAELTAARIALGDRDNELGAARGRVEELEESQRELEGLVKKLEDDL----------VTAQGAGG------------GDSWQDGPPTIDRLLSGARPEASGSSGEAAPVEGS-------MLGIVTAQRERFRKRVADLETEYGRLLDSLGRAQQETAKLTSDNVSLYQKIRFLENFNSQKA-PE----SKIRRVGGQQTGNV---TVVGGTGAGRKSSRYACFSMDDPGGFEGGRQPRDEELAGGGTGPGA---EVRYRKMYEDRMDPFKEFHQREQEQSYRSLRLHDKITLTSGRFFLSNKYARTFIFFYTILLHFLIFFILY 724          
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|1063479806|ref|XP_007036467.2| (PREDICTED: protein CASP [Theobroma cacao])

HSP 1 Score: 117.472 bits (293), Expect = 2.438e-25
Identity = 84/286 (29.37%), Postives = 139/286 (48.60%), Query Frame = 0
Query:   23 SAEARVVELS-------ALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYA--LEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLY 299
            +AE ++VEL+        LI +LEDD+     KG      +GT+                W ++ S         ++EL  +T Q   +     S+   +++++  QRDR++AR RE E  +  ++++ G   A+ E    DN+KLY K+R++Q Y                          +Q  V+    +G+++YA  LE+G        +  E++Y+ +YE+ +NPF AFS  ER ++Y++L   D+ITL + R  L +K AR   FFY + LH+LVF  LY
Sbjct:  433 TAEGKIVELTEKVNEQQKLIQKLEDDIL----KGYSSKERKGTLF-------------DDWDLSES--------GVNELSENTDQKHISSDQDQSS---MLKVICNQRDRFRARLRETEEEIRQLKEKIGELTAELEKTKADNVKLYGKIRYVQDY--------------------------NQEKVI---SRGSKKYAEDLESG------FTSDVESKYKKIYEDDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHILVFTCLY 655          
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|508773711|gb|EOY20967.1| (CCAAT-displacement protein alternatively spliced product isoform 1 [Theobroma cacao] >gi|508773712|gb|EOY20968.1| CCAAT-displacement protein alternatively spliced product isoform 1 [Theobroma cacao])

HSP 1 Score: 117.087 bits (292), Expect = 2.705e-25
Identity = 84/286 (29.37%), Postives = 139/286 (48.60%), Query Frame = 0
Query:   23 SAEARVVELS-------ALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYA--LEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLY 299
            +AE ++VEL+        LI +LEDD+     KG      +GT+                W ++ S         ++EL  +T Q   +     S+   +++++  QRDR++AR RE E  +  ++++ G   A+ E    DN+KLY K+R++Q Y                          +Q  V+    +G+++YA  LE+G        +  E++Y+ +YE+ +NPF AFS  ER ++Y++L   D+ITL + R  L +K AR   FFY + LH+LVF  LY
Sbjct:  433 TAEGKIVELTEKVNEQQKLIQKLEDDIL----KGYSSKERKGTLF-------------DDWDLSES--------GVNELSENTDQKHISSDQDQSS---MLKVICNQRDRFRARLRETEEEIRQLKEKIGELTAELEKTKADNVKLYGKIRYVQDY--------------------------NQEKVI---SRGSKKYAEDLESG------FTSDVESKYKKIYEDDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHILVFTCLY 655          
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|763767150|gb|KJB34365.1| (hypothetical protein B456_006G062600 [Gossypium raimondii])

HSP 1 Score: 115.161 bits (287), Expect = 6.213e-25
Identity = 83/286 (29.02%), Postives = 137/286 (47.90%), Query Frame = 0
Query:   23 SAEARVVELS-------ALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYA--LEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLY 299
            +AE ++VEL+        LI +LEDD+     KG      +GT+                W ++ S          +EL  +T Q   +     S+   +++++  QRDR++AR RE E  +  ++++ G    + E    DN+KLY K+R++Q Y                          +Q  V+    +G+++YA  LE+G        +  E++Y+ +YE+ +NPF AFS  ER ++Y++L   D+ITL + R  L +K AR   FFY + LH+LVF  LY
Sbjct:  240 TAEGKIVELAEKVNEQQKLIQKLEDDIL----KGYSSKEKKGTLF-------------DDWDLSES--------GGNELSENTDQKQVSADQDQSS---MLKVICNQRDRFRARLRETEEEIRQLKEKIGELTTELEKTKADNVKLYGKIRYVQDY--------------------------NQEKVI---SRGSKKYAEDLESG------FTSDVESKYKKIYEDDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHILVFTCLY 462          
The following BLAST results are available for this feature:
BLAST of EWM28396.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110780|gb|EWM28396.1|0.000e+0100.00protein casp [Nannochloropsis gaditana][more]
gi|299115281|emb|CBN75558.1|3.449e-3339.91protein involved in intra-Golgi vesicle-mediated t... [more]
gi|831770317|ref|XP_012752968.1|4.537e-3030.95hypothetical protein SAMD00019534_071070 [Acytoste... [more]
gi|1160566599|ref|XP_020428509.1|4.400e-2929.08C-terminal CASP domain-containing protein [Polysph... [more]
gi|330827631|ref|XP_003291876.1|7.544e-2933.33hypothetical protein DICPUDRAFT_92761 [Dictyosteli... [more]
gi|66810812|ref|XP_639113.1|5.535e-2733.85hypothetical protein DDB_G0283375 [Dictyostelium d... [more]
gi|971514288|dbj|GAQ83909.1|6.989e-2731.10hypothetical protein KFL_001680045 [Klebsormidium ... [more]
gi|1063479806|ref|XP_007036467.2|2.438e-2529.37PREDICTED: protein CASP [Theobroma cacao][more]
gi|508773711|gb|EOY20967.1|2.705e-2529.37CCAAT-displacement protein alternatively spliced p... [more]
gi|763767150|gb|KJB34365.1|6.213e-2529.02hypothetical protein B456_006G062600 [Gossypium ra... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2279rna2279Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications