EWM28396.1, cds2271 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|585110780|gb|EWM28396.1| (protein casp [Nannochloropsis gaditana]) HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0 Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0
Query: 1 MSGRRRIAELEGERARLENEKGSAEARVVELSALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYMWGHHHCTDLHYQADVLMGHPPEPLGMQSLSMGNHAVGGGANHLEG 345
MSGRRRIAELEGERARLENEKGSAEARVVELSALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYMWGHHHCTDLHYQADVLMGHPPEPLGMQSLSMGNHAVGGGANHLEG
Sbjct: 1 MSGRRRIAELEGERARLENEKGSAEARVVELSALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYMWGHHHCTDLHYQADVLMGHPPEPLGMQSLSMGNHAVGGGANHLEG 345
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|299115281|emb|CBN75558.1| (protein involved in intra-Golgi vesicle-mediated transport [Ectocarpus siliculosus]) HSP 1 Score: 140.198 bits (352), Expect = 3.449e-33 Identity = 85/213 (39.91%), Postives = 110/213 (51.64%), Query Frame = 0
Query: 118 ILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAGRVPTGAGAA------------------------ATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYMWGHHHC 306
I+QAQRDR++ R ++LE ++E+ + E++ RDNL+LYEKVRFLQSY++G G D + NV+ AG V G G ATEARY +YE ++NPFT FS ER RKYQ+L+V +KITL TTR FL +K AR VFFY V LH++VF TL W H H
Sbjct: 496 IVQAQRDRFRRRIKKLEAEREDEQRETRAAQGVMENLQRDNLQLYEKVRFLQSYQRGATGAD-------------------KNNVL-----------AAAGGVTPGIGDVEAGGGGGGGGRGAAREGEEGGSRKATEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTLNYWTHSHS 678
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|831770317|ref|XP_012752968.1| (hypothetical protein SAMD00019534_071070 [Acytostelium subglobosum LB1] >gi|735853600|dbj|GAM23932.1| hypothetical protein SAMD00019534_071070 [Acytostelium subglobosum LB1]) HSP 1 Score: 131.339 bits (329), Expect = 4.537e-30 Identity = 104/336 (30.95%), Postives = 160/336 (47.62%), Query Frame = 0
Query: 8 AELEGERARLENEKGSAEARVVELSALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPA-----LGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGK--GAQEYALEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYMWGHHHCTDLHYQADVLMGHPPEPLG--MQSLSMGNH 334
+EL+ R ++E E+ VE SALI RLE+DLA G G+ SQS GP+ +AS + H + TQ P L S ++ I+ QRDR+K + +LE A +E++ K + S+ +DN+KLYEK+RFLQSY K R G V+ K G + Y +E G TE +Y +YE+ +NPF +F+ E+ R+Y++++ +++ L T+R FL+ K +R+ +F Y+V LHLLVF+TLY T + D MG P + +++ + NH
Sbjct: 468 SELDESRRQVE----QLESIQVEQSALILRLEEDLA--VRGGGGNSGNVNLRSSQS---------GPTNDLASLIQSSPISSLSHSTNSGITQITPQASSGDLTGVQSKDDKMLDIVIGQRDRFKTKNLQLENEKAQLEKQLETCKLEVHSLKQDNIKLYEKIRFLQSYDKNRGG-----------------------GVITGNAKRAGDRNYDMERGGTTASTSNNDTEEKYGKLYEDSINPFLSFNKKEKYRRYKEMNTAERVILNTSRFFLSTKYSRLFLFIYSVLLHLLVFVTLYKLA--VTTAEQHDPDFQMGGGPPDIAHMLENKTNNNH 763
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|1160566599|ref|XP_020428509.1| (C-terminal CASP domain-containing protein [Polysphondylium pallidum PN500] >gi|281202172|gb|EFA76377.1| C-terminal CASP domain-containing protein [Polysphondylium pallidum PN500]) HSP 1 Score: 128.642 bits (322), Expect = 4.400e-29 Identity = 89/306 (29.08%), Postives = 151/306 (49.35%), Query Frame = 0
Query: 8 AELEGERARLENEKGSAEARVVELSALISRLEDDLARVASKGVGDVMAEG-TVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTT-QPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAGRVP------------TGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLY 299
EL+ R R++ E+ +E S LI RLE+D + ++G ++ G +G+ + P S + S L+ ++ L ST+ Q + + LD+V QRDR+K + ELEG + +E++ K + S+ +DN+KLYEK+RFLQSY K R G G+ + + + Y LE + TE +Y +YE+ +NPF +F+ E+ R+Y++++ +++ L T+R FL++K +R+ +F Y++ LHLLVF+TLY
Sbjct: 224 TELDESRRRVQ----QLESIQIEQSQLIHRLEED---ITTRGGSSMLNNGGLIGNSGNVNANQPQDLES--LISQSTTPSLNQSLNNLPDSTSSQSTIVVQSKDDKMLDIVV---GQRDRFKVKNLELEGEKSQLEKQLETCKLETSSLKQDNIKLYEKIRFLQSYDKNRGG-------------GI---------ITGNPKRAENSYDLERAGGGSSGSGGGSGGGRSNNTGGETEEKYGKLYEDSINPFLSFNKKEKYRRYKEMNTAERVILNTSRFFLSNKYSRLFLFIYSILLHLLVFITLY 495
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|330827631|ref|XP_003291876.1| (hypothetical protein DICPUDRAFT_92761 [Dictyostelium purpureum] >gi|325077910|gb|EGC31592.1| hypothetical protein DICPUDRAFT_92761 [Dictyostelium purpureum]) HSP 1 Score: 120.168 bits (300), Expect = 7.544e-29 Identity = 69/207 (33.33%), Postives = 115/207 (55.56%), Query Frame = 0
Query: 115 LVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQ----DKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAG-RVPTGA--GAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYMWGHHHCTDLHYQAD 314
++ I+ QRDR+KA+ EL + +E++ + + +S+ DN+KLYEK+RFLQSY K + G + S KR S + Y +E G V +G+ G TE RY +YEE +NPF +F+ E+ R+Y++++ +++ L ++R FL++K +R+ +F Y++ LHL+VF TLY T+ HY +
Sbjct: 1 MLEIVIGQRDRFKAKIDELGIEKSKLEKQLETSRQETQSLKNDNIKLYEKIRFLQSYDKNKSGGNNSGSINIGAGGKRSSNRD------------------TYDIERGVDVSSGSNNGGPETEERYGKLYEESINPFLSFNKKEKYRRYKEMNTAERVILNSSRFFLSNKYSRLFLFIYSILLHLMVFATLYRLA-TITTEQHYDNN 188
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|66810812|ref|XP_639113.1| (hypothetical protein DDB_G0283375 [Dictyostelium discoideum AX4] >gi|60467746|gb|EAL65764.1| hypothetical protein DDB_G0283375 [Dictyostelium discoideum AX4] >gi|94467438|dbj|BAE93880.1| similar to CCAAT displacement protein [Dictyostelium discoideum]) HSP 1 Score: 122.479 bits (306), Expect = 5.535e-27 Identity = 65/192 (33.85%), Postives = 115/192 (59.90%), Query Frame = 0
Query: 115 LVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAG-RVPTGA------GAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLY 299
++ I+ +QRDR+K + ELE + +E++ + + S+ DN+KLYEK+RFLQSY K + G +++ + +H + N+ G + Y +E G +P+ + G TE +Y +YEE +NPF +F+ E+ R+Y++++ +++ L +R FL++K +R+ +F Y+V LHL+VFLTLY
Sbjct: 647 MLDIVISQRDRFKTKIVELESDKSKLEKQLDSCRQELSSLKTDNIKLYEKIRFLQSYDKNKSGGGGINNA---------NKEIHSKR--NNSG-FEKSYDVERGLDIPSSSSSSSSQGGPETEEKYGKLYEESINPFLSFNKKEKYRRYREMNTAERVILNGSRFFLSNKYSRLFLFIYSVLLHLMVFLTLY 826
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|971514288|dbj|GAQ83909.1| (hypothetical protein KFL_001680045 [Klebsormidium nitens]) HSP 1 Score: 122.094 bits (305), Expect = 6.989e-27 Identity = 102/328 (31.10%), Postives = 153/328 (46.65%), Query Frame = 0
Query: 2 SGRRRIAELEGERARL---ENEKGSAEARVVELS-------ALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKG--AQEYA---------LEAGRVP---------TGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLY 299
+ R+ AEL R L +NE G+A RV EL L+ +LEDDL V A+G G G SW+ + L E S+ + AP G+ ++ I+ AQR+R++ R +LE + GR + + + DN+ LY+K+RFL+++ + P+ ++ +R+ G + + VV G G + YA E GR P TG GA E RYR MYE++M+PF F E+ + Y+ L + DKITL + R FL++K AR +FFY + LH L+F LY
Sbjct: 437 TNRKLAAELTAARIALGDRDNELGAARGRVEELEESQRELEGLVKKLEDDL----------VTAQGAGG------------GDSWQDGPPTIDRLLSGARPEASGSSGEAAPVEGS-------MLGIVTAQRERFRKRVADLETEYGRLLDSLGRAQQETAKLTSDNVSLYQKIRFLENFNSQKA-PE----SKIRRVGGQQTGNV---TVVGGTGAGRKSSRYACFSMDDPGGFEGGRQPRDEELAGGGTGPGA---EVRYRKMYEDRMDPFKEFHQREQEQSYRSLRLHDKITLTSGRFFLSNKYARTFIFFYTILLHFLIFFILY 724
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|1063479806|ref|XP_007036467.2| (PREDICTED: protein CASP [Theobroma cacao]) HSP 1 Score: 117.472 bits (293), Expect = 2.438e-25 Identity = 84/286 (29.37%), Postives = 139/286 (48.60%), Query Frame = 0
Query: 23 SAEARVVELS-------ALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYA--LEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLY 299
+AE ++VEL+ LI +LEDD+ KG +GT+ W ++ S ++EL +T Q + S+ +++++ QRDR++AR RE E + ++++ G A+ E DN+KLY K+R++Q Y +Q V+ +G+++YA LE+G + E++Y+ +YE+ +NPF AFS ER ++Y++L D+ITL + R L +K AR FFY + LH+LVF LY
Sbjct: 433 TAEGKIVELTEKVNEQQKLIQKLEDDIL----KGYSSKERKGTLF-------------DDWDLSES--------GVNELSENTDQKHISSDQDQSS---MLKVICNQRDRFRARLRETEEEIRQLKEKIGELTAELEKTKADNVKLYGKIRYVQDY--------------------------NQEKVI---SRGSKKYAEDLESG------FTSDVESKYKKIYEDDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHILVFTCLY 655
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|508773711|gb|EOY20967.1| (CCAAT-displacement protein alternatively spliced product isoform 1 [Theobroma cacao] >gi|508773712|gb|EOY20968.1| CCAAT-displacement protein alternatively spliced product isoform 1 [Theobroma cacao]) HSP 1 Score: 117.087 bits (292), Expect = 2.705e-25 Identity = 84/286 (29.37%), Postives = 139/286 (48.60%), Query Frame = 0
Query: 23 SAEARVVELS-------ALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYA--LEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLY 299
+AE ++VEL+ LI +LEDD+ KG +GT+ W ++ S ++EL +T Q + S+ +++++ QRDR++AR RE E + ++++ G A+ E DN+KLY K+R++Q Y +Q V+ +G+++YA LE+G + E++Y+ +YE+ +NPF AFS ER ++Y++L D+ITL + R L +K AR FFY + LH+LVF LY
Sbjct: 433 TAEGKIVELTEKVNEQQKLIQKLEDDIL----KGYSSKERKGTLF-------------DDWDLSES--------GVNELSENTDQKHISSDQDQSS---MLKVICNQRDRFRARLRETEEEIRQLKEKIGELTAELEKTKADNVKLYGKIRYVQDY--------------------------NQEKVI---SRGSKKYAEDLESG------FTSDVESKYKKIYEDDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHILVFTCLY 655
BLAST of EWM28396.1 vs. NCBI_GenBank
Match: gi|763767150|gb|KJB34365.1| (hypothetical protein B456_006G062600 [Gossypium raimondii]) HSP 1 Score: 115.161 bits (287), Expect = 6.213e-25 Identity = 83/286 (29.02%), Postives = 137/286 (47.90%), Query Frame = 0
Query: 23 SAEARVVELS-------ALISRLEDDLARVASKGVGDVMAEGTVGSQSRTPSVPPGRGPSWKVASSRDEEDLDVDMHELLASTTQPAPALGASPSASLDLVRILQAQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYA--LEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLY 299
+AE ++VEL+ LI +LEDD+ KG +GT+ W ++ S +EL +T Q + S+ +++++ QRDR++AR RE E + ++++ G + E DN+KLY K+R++Q Y +Q V+ +G+++YA LE+G + E++Y+ +YE+ +NPF AFS ER ++Y++L D+ITL + R L +K AR FFY + LH+LVF LY
Sbjct: 240 TAEGKIVELAEKVNEQQKLIQKLEDDIL----KGYSSKEKKGTLF-------------DDWDLSES--------GGNELSENTDQKQVSADQDQSS---MLKVICNQRDRFRARLRETEEEIRQLKEKIGELTTELEKTKADNVKLYGKIRYVQDY--------------------------NQEKVI---SRGSKKYAEDLESG------FTSDVESKYKKIYEDDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHILVFTCLY 462 The following BLAST results are available for this feature:
BLAST of EWM28396.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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