EWM28432.1, cds2242 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM28432.1
Unique Name	cds2242
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002458.1:1255725..1256093 -
Alignment location	CM002458.1:1255223..1255336 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM28432.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101007g2.5031.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1255725..1256093 -
CM002458.1	supercontig	CM002458.1:1255223..1255336 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM28432.1 vs. NCBI_GenBank
Match: gi|585110825|gb|EWM28432.1| (hypothetical protein Naga_101007g2 [Nannochloropsis gaditana])

HSP 1 Score: 311.227 bits (796), Expect = 5.009e-107
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0

Query:    1 MSGGPKEKQHVKTQAGADDGKRRRKEHKAKQPLSLQQSNGGRGGGRGGGSDVGRGPKAGMPAGKAFAVQGVEERKRGCGKTNGHGGRGLAKPRQEAGGTSQPQRLAQALPQPHLSLPDSRAKEGKGDRRRGKAHGRCEIFLTPAREDRAIEIQSPRTGES 160
            MSGGPKEKQHVKTQAGADDGKRRRKEHKAKQPLSLQQSNGGRGGGRGGGSDVGRGPKAGMPAGKAFAVQGVEERKRGCGKTNGHGGRGLAKPRQEAGGTSQPQRLAQALPQPHLSLPDSRAKEGKGDRRRGKAHGRCEIFLTPAREDRAIEIQSPRTGES
Sbjct:    1 MSGGPKEKQHVKTQAGADDGKRRRKEHKAKQPLSLQQSNGGRGGGRGGGSDVGRGPKAGMPAGKAFAVQGVEERKRGCGKTNGHGGRGLAKPRQEAGGTSQPQRLAQALPQPHLSLPDSRAKEGKGDRRRGKAHGRCEIFLTPAREDRAIEIQSPRTGES 160

The following BLAST results are available for this feature:

BLAST of EWM28432.1 vs. NCBI_GenBank

BLAST of EWM28432.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585110825\|gb\|EWM28432.1\|	5.009e-107	100.00	hypothetical protein Naga_101007g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna2250	rna2250	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications