EWM28434.1, cds2239 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28434.1 vs. NCBI_GenBank
Match: gi|585110828|gb|EWM28434.1| (hypothetical protein Naga_101843g1 [Nannochloropsis gaditana]) HSP 1 Score: 378.637 bits (971), Expect = 6.215e-133 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query: 1 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKARTGGREGGREGGREGGREGGRSGQLEDRKCGRSETIECVLEISPRIKHVIYASPEYLSNSESDGMIRRKP 187
MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKARTGGREGGREGGREGGREGGRSGQLEDRKCGRSETIECVLEISPRIKHVIYASPEYLSNSESDGMIRRKP
Sbjct: 1 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKARTGGREGGREGGREGGREGGRSGQLEDRKCGRSETIECVLEISPRIKHVIYASPEYLSNSESDGMIRRKP 187
BLAST of EWM28434.1 vs. NCBI_GenBank
Match: gi|585110827|gb|EWM28433.1| (hypothetical protein Naga_101843g1 [Nannochloropsis gaditana]) HSP 1 Score: 239.195 bits (609), Expect = 8.180e-78 Identity = 130/171 (76.02%), Postives = 130/171 (76.02%), Query Frame = 0
Query: 1 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKART--------------------------------GGREGGREGGREGGREGGRS 139
MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKK GGREG EGGRE RE G S
Sbjct: 1 MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRFDYYKKVDNLELVIIIILGCVLWNLVAFFAFAKRMFPNFWWGGREGEWEGGRERHRERGGS 171
BLAST of EWM28434.1 vs. NCBI_GenBank
Match: gi|298706590|emb|CBJ29549.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 82.0333 bits (201), Expect = 7.473e-15 Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 0
Query: 2 SGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPFLRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDLMVIAAISSQRF 111
S GR GP A LG+H+ L A+SV +L++L +++LE + HH++SG RLF++ M AA++ M +R S R+ +WF RL+G LDLM AAISS F
Sbjct: 301 SVAGRDRGPTLGI-HRAGLGAHLLLPAVSVGAAWLVDLFIRFLENRVEYTAKHHIISGFRLFQLSMCAALLFMCFIRRTSPFRYHSEWFFRLSGLCLDLMTTAAISSIGF 409 The following BLAST results are available for this feature:
BLAST of EWM28434.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|