rna2247, rna2247 (mRNA) Nannochloropsis gaditana

Overview
Namerna2247
Unique Namerna2247
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length729
Alignment locationCM002458.1:1251578..1252919 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101843g1.2564.mrna
Orig protein idgnl|cribi|Naga_101843g1.2564
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1251578..1252919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101843g1gene2149Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2247rna2247-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28434.1cds2239Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2247 ID=rna2247|Name=rna2247|organism=Nannochloropsis gaditana|type=mRNA|length=729bp
GTTGGACAGGATTCTTCCTGCAACTCGGAAGGTGATTCAATGCCGTGGTA
ACCAAACACTTTGAAATTGGAAAGGTCATTGACATTCATCGTAACAGAGA
GCTGAGGAAGCAGGCGAGCGTAAGAATCCTAGTCATGGCTTCGACAGCAT
CCGCCACTGGGGGTGAGCTGCCCATTACAGATCAAACATCGAAAGAGGAG
ACACTCCGAGAGATGGGGGAATGGGCAGCGCGCTACGAAATGATCGCAGC
CATGGGCTATTTGTCCGCGTTGTTAATGGTGGGGAAGGCCCTTCACAATT
TGGGGAAGCTCGCCAAGTTCCGTTTCACCCCGCCCTCGGCCGTTATCTCG
GGGTTTTTAGGCCTGGCCCTCTACGACATGATGGGCGCCGGCTCCAAACT
CTTGCAGGTGGAACTAGAATCGACGCTGCGTTCCATCGAAGTCAACATCG
TGAACTTTGTCTTCACCGCCCTCGTGCTCGGCTTCACGAGCGGGACCAAG
AAAAACAAGATGACCTACAAGCGCATTTTTGGCCTGATTTTCCACGAAGG
CATGCCCATGCTGCTTTACGCGCAAGCCCTCATTTGGGGTAACTCGGTCG
TCGCCCTCCTCGTCACGGGCATCTACCGGCTGTGGAACAAGGAAATCTCC
GCCTTTGAAGGCGGGCTTGTCACCCTCGGCTTGGAGGCGGGCCGCGACCT
CCTCCCTTCGCGGGTGAAGTTCAAGGAGG
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protein sequence of rna2247

>rna2247-protein ID=rna2247-protein|Name=rna2247|organism=Nannochloropsis gaditana|type=polypeptide|length=187bp
MSGGGRVGGPLFSAGEEATLGSHIGLIALSVFFGYLLNLSLKYLELNRPF
LRNHHLVSGIRLFKICMVAAVVCMVTVRAASNLRFKPDWFHRLAGFSLDL
MVIAAISSQRFDYYKKARTGGREGGREGGREGGREGGRSGQLEDRKCGRS
ETIECVLEISPRIKHVIYASPEYLSNSESDGMIRRKP
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mRNA from alignment at CM002458.1:1251578..1252919+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2247 ID=rna2247|Name=rna2247|organism=Nannochloropsis gaditana|type=mRNA|length=1342bp|location=Sequence derived from alignment at CM002458.1:1251578..1252919+ (Nannochloropsis gaditana)
ATGTCCGGGGGCGGACGGGTTGGGGGGTAAGTGGGCgcaggggagaaggg
cgggggtggTTCGAAGGCACAGGACAATAGAGGCATAGCAGGTCCCCTAG
TGACGTGGCGCGaatccctttctcctctctccctccctgaatCCCGCCCT
GGACCAGGCCCCTCTTCtcggcgggagaggaagccaCCCTCGGCTCCCAC
ATCGGGCTCATCGCCCTCTCGGTGTTTTTCGGCTATCTCCTcaacctctc
cctcaagTACCTCGgtgaggacgggagggagggagggagggaggggcgga
gggcgggtctGGGGAGTGGGAATCGTCCCATCGCGCAACTCGTCCTTCAC
GCcctgccgccctctcccccttcctgtctaGAGCTGAATCGACCTTTCCT
CCGCAACCACCACCTGGTCTCGGGTATCCGCCTCTTCAAGATTTGCATGG
TTGCCGCGGTGGTCTGTATGGTGACGGTGCGGGCTGCGTCAAACCTTAGG
TACGTGACcaagggaaggggtggggagggaggaagtgaaggagggcggga
aagaggaagggaggaaccAAGTGCCTGCAATTGTTCCAACGTTTCCGCTT
AATATGTAATTTGAGCGCGACTGTCCTCCATACTCTGCTTACTCACTCCT
GATTCTgactccctcccgccctccctcgcctccagGTTCAAGCCCGACTG
GTTCCACCGACTGGCGGGTTTCAGCTTGGACTTGATGGTCATcgccgcca
tttcctcccagcGATTCGACTACTACAAGAAGGcacggacgggagggagg
gagggagggagggagggagggagggagggagggagggagggagggaggag
tggccAGCTGGAGGACCGAAAGTGTGGTCGCAGCGAAACGATTGAATGCG
TGTTGGAGATATCGCCGCGAATCAAACATGTGATATACGCGTCTCCAGAG
TATCTTTCCAACTCTGAGAGTGATGGGATGATAAGGAGGAAACCCTGAAG
GAGATAGGGCGATTgatcacctccctcccattcttgagcctccccttcct
ccctccttccttccttttctgcTAGGTCGACAATCTCGAGTTGGtgatca
tcatcatcctggGATGCGTGTTGTGGAACCTTGtggccttcttcgccttt
GCCAAGCGCATGTTTCCAAATTtttggtggggagggagggagggagaatg
ggagggagggagggagaggcaccGAGAGCGGGGAGGCAGTACGGACGGGT
ACATGCCTAAGAGGGAACACTGTTATGGAGGCATCTAGCGAGAAGTCTCG
CTTTCATTACCATGTCCACACTCCCCggtccatccctcccca
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Coding sequence (CDS) from alignment at CM002458.1:1251578..1252919+

>rna2247 ID=rna2247|Name=rna2247|organism=Nannochloropsis gaditana|type=CDS|length=2256bp|location=Sequence derived from alignment at CM002458.1:1251578..1252919+ (Nannochloropsis gaditana)
ATGTCCGGGGGCGGACGGGTTGGGGGGCCCCTCTTCtcggcgggagagga
agccaCCCTCGGCTCCCACATCGGGCTCATCGCCCTCTCGGTGTTTTTCG
GCTATCTCCTcaacctctccctcaagTACCTCGAGCTGAATCGACCTTTC
CTCCGCAACCACCACCTGGTCTCGGGTATCCGCCTCTTCAAGATTTGCAT
GGTTGCCGCGGTGGTCTGTATGGTGACGGTGCGGGCTGCGTCAAACCTTA
GGTTCAAGCCCGACTGGTTCCACCGACTGGCGGGTTTCAGCTTGGACTTG
ATGGTCATcgccgccatttcctcccagcGATTCGACTACTACAAGAAGGc
acggacgggagggagggagggagggagggagggagggagggagggaggga
gggagggagggaggagtggccAGCTGGAGGACCGAAAGTGTGGTCGCAGC
GAAACGATTGAATGCGTGTTGGAGATATCGCCGCGAATCAAACATGTGAT
ATACGCGTCTCCAGAGTATCTTTCCAACTCTGAGAGTGATGGGATGATAA
GGAGGAAACCCTGAATGTCCGGGGGCGGACGGGTTGGGGGGCCCCTCTTC
tcggcgggagaggaagccaCCCTCGGCTCCCACATCGGGCTCATCGCCCT
CTCGGTGTTTTTCGGCTATCTCCTcaacctctccctcaagTACCTCGAGC
TGAATCGACCTTTCCTCCGCAACCACCACCTGGTCTCGGGTATCCGCCTC
TTCAAGATTTGCATGGTTGCCGCGGTGGTCTGTATGGTGACGGTGCGGGC
TGCGTCAAACCTTAGGTTCAAGCCCGACTGGTTCCACCGACTGGCGGGTT
TCAGCTTGGACTTGATGGTCATcgccgccatttcctcccagcGATTCGAC
TACTACAAGAAGGcacggacgggagggagggagggagggagggagggagg
gagggagggagggagggagggagggaggagtggccAGCTGGAGGACCGAA
AGTGTGGTCGCAGCGAAACGATTGAATGCGTGTTGGAGATATCGCCGCGA
ATCAAACATGTGATATACGCGTCTCCAGAGTATCTTTCCAACTCTGAGAG
TGATGGGATGATAAGGAGGAAACCCTGAATGTCCGGGGGCGGACGGGTTG
GGGGGCCCCTCTTCtcggcgggagaggaagccaCCCTCGGCTCCCACATC
GGGCTCATCGCCCTCTCGGTGTTTTTCGGCTATCTCCTcaacctctccct
caagTACCTCGAGCTGAATCGACCTTTCCTCCGCAACCACCACCTGGTCT
CGGGTATCCGCCTCTTCAAGATTTGCATGGTTGCCGCGGTGGTCTGTATG
GTGACGGTGCGGGCTGCGTCAAACCTTAGGTTCAAGCCCGACTGGTTCCA
CCGACTGGCGGGTTTCAGCTTGGACTTGATGGTCATcgccgccatttcct
cccagcGATTCGACTACTACAAGAAGGcacggacgggagggagggaggga
gggagggagggagggagggagggagggagggagggagggaggagtggccA
GCTGGAGGACCGAAAGTGTGGTCGCAGCGAAACGATTGAATGCGTGTTGG
AGATATCGCCGCGAATCAAACATGTGATATACGCGTCTCCAGAGTATCTT
TCCAACTCTGAGAGTGATGGGATGATAAGGAGGAAACCCTGAATGTCCGG
GGGCGGACGGGTTGGGGGGCCCCTCTTCtcggcgggagaggaagccaCCC
TCGGCTCCCACATCGGGCTCATCGCCCTCTCGGTGTTTTTCGGCTATCTC
CTcaacctctccctcaagTACCTCGAGCTGAATCGACCTTTCCTCCGCAA
CCACCACCTGGTCTCGGGTATCCGCCTCTTCAAGATTTGCATGGTTGCCG
CGGTGGTCTGTATGGTGACGGTGCGGGCTGCGTCAAACCTTAGGTTCAAG
CCCGACTGGTTCCACCGACTGGCGGGTTTCAGCTTGGACTTGATGGTCAT
cgccgccatttcctcccagcGATTCGACTACTACAAGAAGGcacggacgg
gagggagggagggagggagggagggagggagggagggagggagggaggga
gggaggagtggccAGCTGGAGGACCGAAAGTGTGGTCGCAGCGAAACGAT
TGAATGCGTGTTGGAGATATCGCCGCGAATCAAACATGTGATATACGCGT
CTCCAGAGTATCTTTCCAACTCTGAGAGTGATGGGATGATAAGGAGGAAA
CCCTGA
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Synonyms
Publications