EWM28446.1, cds2227 (CDS) Nannochloropsis gaditana

Overview
NameEWM28446.1
Unique Namecds2227
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1226882..1227162 -
Alignment locationCM002458.1:1226614..1226670 -
Alignment locationCM002458.1:1226299..1226410 -
Alignment locationCM002458.1:1225954..1226057 -
Alignment locationCM002458.1:1225883..1225907 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28446.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100591g1.6271.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1226882..1227162 -
CM002458.1supercontigCM002458.1:1226614..1226670 -
CM002458.1supercontigCM002458.1:1226299..1226410 -
CM002458.1supercontigCM002458.1:1225954..1226057 -
CM002458.1supercontigCM002458.1:1225883..1225907 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28446.1 vs. NCBI_GenBank
Match: gi|585110847|gb|EWM28446.1| (hypothetical protein Naga_100591g1 [Nannochloropsis gaditana])

HSP 1 Score: 397.127 bits (1019), Expect = 5.672e-140
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query:    1 MRQHVSILVIAYIFLVSMGSLVLVSGKDRRSDTLFGRTRREHGKDASNQAQEEDLENPPPKYTFERRRLSGEEAAKAEATRIDPTYEPEMNLIQRIKAGTFDFFTDALPEMLESVTKDEAGLIFENFKVMKTTKAWKAFQESGDTEDEEAVASAMIKSVQEMGQIMLGARYFTKDADSVTAVTDEFPSSPNY 192
            MRQHVSILVIAYIFLVSMGSLVLVSGKDRRSDTLFGRTRREHGKDASNQAQEEDLENPPPKYTFERRRLSGEEAAKAEATRIDPTYEPEMNLIQRIKAGTFDFFTDALPEMLESVTKDEAGLIFENFKVMKTTKAWKAFQESGDTEDEEAVASAMIKSVQEMGQIMLGARYFTKDADSVTAVTDEFPSSPNY
Sbjct:    1 MRQHVSILVIAYIFLVSMGSLVLVSGKDRRSDTLFGRTRREHGKDASNQAQEEDLENPPPKYTFERRRLSGEEAAKAEATRIDPTYEPEMNLIQRIKAGTFDFFTDALPEMLESVTKDEAGLIFENFKVMKTTKAWKAFQESGDTEDEEAVASAMIKSVQEMGQIMLGARYFTKDADSVTAVTDEFPSSPNY 192          
BLAST of EWM28446.1 vs. NCBI_GenBank
Match: gi|553185284|ref|XP_005854226.1| (hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526] >gi|553189756|ref|XP_005855066.1| hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526] >gi|422293989|gb|EKU21289.1| hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526] >gi|422294833|gb|EKU22133.1| hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 95.9005 bits (237), Expect = 1.559e-20
Identity = 70/199 (35.18%), Postives = 109/199 (54.77%), Query Frame = 0
Query:    1 MRQHVSILVIAYIFLVSMGSLVLVSGKDRRSDTLFGRTRREHGKDASNQAQEEDLENPPPKYTFERRRLSGEEAAKAEATRIDPTYEPEMNLIQRIKAGTFDFFTDALPEMLE-------------SVTKDEAGLIFENFKVMKTTKAWKAFQESGDTEDEEAVASAMIKSVQEMGQIMLGARYFTKDADSVTAVTDEF 186
            M QH     + + F++  G + L +    +  +LF +   +H +     ++         K +  +RR S + + +  AT+     +P+ ++I+RIKAGTFDFF D+LP MLE             +VTK EA  IFE F  MKTT  WK F E+G+  DE+A A+AM+++V+EMG  ++ AR  TKDAD+V    ++F
Sbjct:    1 MAQHQPWKFLVFKFIILGGCIFLGA----QGSSLFDKIHEQHPQKGDKSSKTSR------KSSSGQRRASSQASTEEAATKSSTVLDPDFDMIRRIKAGTFDFFRDSLPGMLEYVGGDGSEKDWEETVTKREARQIFEQFPFMKTTNVWKRFIETGEVADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDF 189          
BLAST of EWM28446.1 vs. NCBI_GenBank
Match: gi|585100446|gb|EWM20647.1| (hypothetical protein Naga_100289g4 [Nannochloropsis gaditana])

HSP 1 Score: 58.5362 bits (140), Expect = 2.658e-7
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0
Query:  111 MLESVTKDEAGLIFENFKVMKTTKAWKAFQESGDTEDEEAVASAMIKSVQEMGQIMLGARYFTKDADSVTAVTDEF 186
             L +VTK EA  IFE F  MKTT  WK F E+G+  DE+A A+AM+++V+EMG  ++ AR  TKDAD+V    ++F
Sbjct:   16 FLRTVTKREARQIFEQFPFMKTTNVWKRFIETGEAADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDF 91          
The following BLAST results are available for this feature:
BLAST of EWM28446.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585110847|gb|EWM28446.1|5.672e-140100.00hypothetical protein Naga_100591g1 [Nannochloropsi... [more]
gi|553185284|ref|XP_005854226.1|1.559e-2035.18hypothetical protein NGA_0223401 [Nannochloropsis ... [more]
gi|585100446|gb|EWM20647.1|2.658e-750.00hypothetical protein Naga_100289g4 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2235rna2235Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications