EWM28446.1, cds2227 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28446.1 vs. NCBI_GenBank
Match: gi|585110847|gb|EWM28446.1| (hypothetical protein Naga_100591g1 [Nannochloropsis gaditana]) HSP 1 Score: 397.127 bits (1019), Expect = 5.672e-140 Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query: 1 MRQHVSILVIAYIFLVSMGSLVLVSGKDRRSDTLFGRTRREHGKDASNQAQEEDLENPPPKYTFERRRLSGEEAAKAEATRIDPTYEPEMNLIQRIKAGTFDFFTDALPEMLESVTKDEAGLIFENFKVMKTTKAWKAFQESGDTEDEEAVASAMIKSVQEMGQIMLGARYFTKDADSVTAVTDEFPSSPNY 192
MRQHVSILVIAYIFLVSMGSLVLVSGKDRRSDTLFGRTRREHGKDASNQAQEEDLENPPPKYTFERRRLSGEEAAKAEATRIDPTYEPEMNLIQRIKAGTFDFFTDALPEMLESVTKDEAGLIFENFKVMKTTKAWKAFQESGDTEDEEAVASAMIKSVQEMGQIMLGARYFTKDADSVTAVTDEFPSSPNY
Sbjct: 1 MRQHVSILVIAYIFLVSMGSLVLVSGKDRRSDTLFGRTRREHGKDASNQAQEEDLENPPPKYTFERRRLSGEEAAKAEATRIDPTYEPEMNLIQRIKAGTFDFFTDALPEMLESVTKDEAGLIFENFKVMKTTKAWKAFQESGDTEDEEAVASAMIKSVQEMGQIMLGARYFTKDADSVTAVTDEFPSSPNY 192
BLAST of EWM28446.1 vs. NCBI_GenBank
Match: gi|553185284|ref|XP_005854226.1| (hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526] >gi|553189756|ref|XP_005855066.1| hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526] >gi|422293989|gb|EKU21289.1| hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526] >gi|422294833|gb|EKU22133.1| hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 95.9005 bits (237), Expect = 1.559e-20 Identity = 70/199 (35.18%), Postives = 109/199 (54.77%), Query Frame = 0
Query: 1 MRQHVSILVIAYIFLVSMGSLVLVSGKDRRSDTLFGRTRREHGKDASNQAQEEDLENPPPKYTFERRRLSGEEAAKAEATRIDPTYEPEMNLIQRIKAGTFDFFTDALPEMLE-------------SVTKDEAGLIFENFKVMKTTKAWKAFQESGDTEDEEAVASAMIKSVQEMGQIMLGARYFTKDADSVTAVTDEF 186
M QH + + F++ G + L + + +LF + +H + ++ K + +RR S + + + AT+ +P+ ++I+RIKAGTFDFF D+LP MLE +VTK EA IFE F MKTT WK F E+G+ DE+A A+AM+++V+EMG ++ AR TKDAD+V ++F
Sbjct: 1 MAQHQPWKFLVFKFIILGGCIFLGA----QGSSLFDKIHEQHPQKGDKSSKTSR------KSSSGQRRASSQASTEEAATKSSTVLDPDFDMIRRIKAGTFDFFRDSLPGMLEYVGGDGSEKDWEETVTKREARQIFEQFPFMKTTNVWKRFIETGEVADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDF 189
BLAST of EWM28446.1 vs. NCBI_GenBank
Match: gi|585100446|gb|EWM20647.1| (hypothetical protein Naga_100289g4 [Nannochloropsis gaditana]) HSP 1 Score: 58.5362 bits (140), Expect = 2.658e-7 Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0
Query: 111 MLESVTKDEAGLIFENFKVMKTTKAWKAFQESGDTEDEEAVASAMIKSVQEMGQIMLGARYFTKDADSVTAVTDEF 186
L +VTK EA IFE F MKTT WK F E+G+ DE+A A+AM+++V+EMG ++ AR TKDAD+V ++F
Sbjct: 16 FLRTVTKREARQIFEQFPFMKTTNVWKRFIETGEAADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDF 91 The following BLAST results are available for this feature:
BLAST of EWM28446.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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